Wall clock time and date at job start Tue Mar 31 2020 19:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42898 * 114.00272 * 2 1 4 4 C 1.52998 * 109.47851 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47680 * 180.02562 * 4 3 2 6 6 N 1.28439 * 125.18632 * 264.53210 * 5 4 3 7 7 C 1.30870 * 110.92670 * 180.02562 * 6 5 4 8 8 C 1.39676 * 107.85954 * 359.77566 * 7 6 5 9 9 C 1.36594 * 125.19189 * 84.55171 * 5 4 3 10 10 C 1.47163 * 126.88180 * 359.95450 * 9 5 4 11 11 O 1.21624 * 120.00510 * 5.36260 * 10 9 5 12 12 N 1.34777 * 119.99872 * 185.37350 * 10 9 5 13 13 C 1.46500 * 119.99866 * 174.72963 * 12 10 9 14 14 H 1.08997 * 109.47369 * 324.99149 * 13 12 10 15 15 C 1.52999 * 109.47116 * 85.00105 * 13 12 10 16 16 C 1.53006 * 109.46892 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47193 * 299.99600 * 16 15 13 18 18 C 1.53002 * 109.47372 * 60.00258 * 17 16 15 19 19 H 1.08996 * 109.47392 * 59.99655 * 18 17 16 20 20 N 1.46500 * 109.47480 * 180.02562 * 18 17 16 21 21 C 1.36931 * 119.99668 * 274.99983 * 20 18 17 22 22 H 1.07993 * 120.00490 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99847 * 179.71960 * 21 20 18 24 24 N 1.31622 * 119.99823 * 0.28245 * 23 21 20 25 25 Si 1.86796 * 120.00026 * 180.27168 * 23 21 20 26 26 H 1.48499 * 109.47119 * 60.00834 * 25 23 21 27 27 H 1.48502 * 109.46761 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47356 * 300.00377 * 25 23 21 29 29 C 1.53006 * 109.46830 * 204.99572 * 13 12 10 30 30 H 1.09006 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47636 * 299.99928 * 1 2 3 32 32 H 1.09005 * 109.47515 * 60.00018 * 1 2 3 33 33 H 1.09003 * 109.46890 * 60.00008 * 3 2 1 34 34 H 1.09002 * 109.47020 * 299.99900 * 3 2 1 35 35 H 1.09004 * 109.46722 * 59.99449 * 4 3 2 36 36 H 1.08998 * 109.46956 * 300.00470 * 4 3 2 37 37 H 1.07997 * 126.07227 * 180.02562 * 7 6 5 38 38 H 1.07997 * 127.32252 * 180.26813 * 8 7 6 39 39 H 0.97004 * 120.00117 * 354.72772 * 12 10 9 40 40 H 1.08996 * 109.47748 * 59.99853 * 15 13 12 41 41 H 1.09001 * 109.46640 * 299.99013 * 15 13 12 42 42 H 1.08998 * 109.46855 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.47041 * 59.99803 * 16 15 13 44 44 H 1.09004 * 109.47292 * 300.00049 * 17 16 15 45 45 H 1.08997 * 109.47283 * 180.02562 * 17 16 15 46 46 H 0.97004 * 119.99643 * 94.99861 * 20 18 17 47 47 H 0.97003 * 119.99998 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.47287 * 60.00131 * 29 13 12 49 49 H 1.09004 * 109.47419 * 299.99967 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 7 4.5233 3.1591 -1.0447 7 6 5.0118 4.3299 -0.7232 8 6 4.9222 4.4651 0.6641 9 6 4.3551 3.2846 1.1116 10 6 4.0490 2.9244 2.5053 11 8 3.6337 1.8121 2.7688 12 7 4.2289 3.8272 3.4897 13 6 3.8165 3.5097 4.8591 14 1 2.9138 2.8994 4.8345 15 6 4.9349 2.7381 5.5625 16 6 4.5044 2.4070 6.9930 17 6 4.2230 3.7040 7.7540 18 6 3.1047 4.4758 7.0506 19 1 2.2018 3.8656 7.0263 20 7 2.8356 5.7181 7.7790 21 6 1.9806 5.7131 8.8485 22 1 1.5049 4.7934 9.1554 23 6 1.7301 6.8891 9.5423 24 7 2.3103 8.0099 9.1686 25 14 0.5696 6.8809 11.0061 26 1 1.0894 5.9555 12.0447 27 1 0.4722 8.2520 11.5681 28 1 -0.7756 6.4289 10.5687 29 6 3.5347 4.8065 5.6205 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8566 0.6439 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 5.4094 5.0632 -1.4092 38 1 5.2311 5.3106 1.2609 39 1 4.6314 4.6873 3.2914 40 1 5.8376 3.3484 5.5872 41 1 5.1355 1.8141 5.0201 42 1 5.3009 1.8569 7.4939 43 1 3.6015 1.7968 6.9686 44 1 5.1259 4.3143 7.7783 45 1 3.9168 3.4682 8.7731 46 1 3.2632 6.5441 7.5036 47 1 2.1355 8.8316 9.6537 48 1 2.7381 5.3563 5.1194 49 1 4.4375 5.4169 5.6452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981160067.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:29 Heat of formation + Delta-G solvation = -1.796593 kcal Electronic energy + Delta-G solvation = -29271.270240 eV Core-core repulsion = 25235.145783 eV Total energy + Delta-G solvation = -4036.124457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.84207 -39.87875 -38.32369 -37.92928 -34.95219 -34.12767 -33.39589 -31.41640 -31.11583 -29.63208 -29.15817 -27.78806 -26.64589 -24.27866 -23.76774 -23.33444 -22.23916 -21.74127 -20.69258 -20.28558 -19.43370 -18.27594 -17.14272 -16.95360 -16.44359 -16.35518 -16.22467 -15.76723 -15.15583 -15.01303 -14.65039 -14.43711 -14.29464 -14.05922 -13.84297 -13.78420 -13.56684 -13.21299 -13.13383 -12.73950 -12.44614 -12.20245 -12.12232 -11.88397 -11.68145 -11.11328 -11.02484 -11.00383 -10.89022 -10.76163 -10.43032 -10.39147 -10.23087 -10.19256 -10.08561 -9.78851 -9.65706 -9.52971 -9.37105 -9.06277 -8.89040 -6.99167 -5.79258 -3.08017 0.98253 1.92110 2.33073 2.94257 3.01548 3.42517 3.47243 3.47842 3.58864 4.20034 4.35621 4.52383 4.55526 4.65840 4.83655 4.89232 4.93384 4.99582 5.03005 5.04236 5.21423 5.27317 5.31798 5.34642 5.39668 5.46482 5.46883 5.56092 5.64290 5.69213 5.83146 5.92700 5.97950 6.10346 6.17023 6.22501 6.28138 6.37848 6.45514 6.49003 6.56742 6.68159 6.69087 6.93207 7.09032 7.30127 7.68023 7.74930 7.97602 8.39447 9.50639 10.07500 10.42242 11.43359 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.002392 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.565651 B =11703.016965 C =12271.444117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.055 3.945 4 C 0.121 3.879 5 N -0.256 5.256 6 N -0.278 5.278 7 C 0.000 4.000 8 C -0.187 4.187 9 C -0.033 4.033 10 C 0.587 3.413 11 O -0.536 6.536 12 N -0.705 5.705 13 C 0.152 3.848 14 H 0.089 0.911 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.130 4.130 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.188 0.812 38 H 0.163 0.837 39 H 0.403 0.597 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.069 0.931 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 -11.232 -20.507 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.023 4.023 4 C 0.001 3.999 5 N -0.045 5.045 6 N -0.110 5.110 7 C -0.176 4.176 8 C -0.216 4.216 9 C -0.162 4.162 10 C 0.372 3.628 11 O -0.414 6.414 12 N -0.356 5.356 13 C 0.048 3.952 14 H 0.107 0.893 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.178 4.178 18 C 0.074 3.926 19 H 0.066 0.934 20 N -0.364 5.364 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.169 4.169 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.205 0.795 38 H 0.181 0.819 39 H 0.238 0.762 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.986 -13.058 -21.069 25.106 hybrid contribution -0.256 1.660 1.289 2.117 sum 3.729 -11.398 -19.781 23.132 Atomic orbital electron populations 1.22791 0.79950 1.03164 1.00370 1.87781 1.20521 1.26405 1.95544 1.22622 0.92402 0.85848 1.01399 1.21810 0.92580 0.78380 1.07166 1.45493 1.42342 1.14378 1.02277 1.73240 1.15836 1.08257 1.13641 1.23617 1.03967 0.94906 0.95132 1.22323 1.05626 0.97818 0.95812 1.21552 1.10062 0.94447 0.90091 1.16929 0.78098 0.84872 0.82921 1.90817 1.46400 1.20418 1.83738 1.45877 1.62656 1.18657 1.08362 1.21112 0.98110 0.97413 0.78543 0.89312 1.21891 0.98048 0.99985 0.96385 1.21485 1.00867 0.98538 0.94423 1.22299 1.00399 0.95134 0.99943 1.20075 0.95108 0.89331 0.88113 0.93374 1.42386 1.54111 1.05179 1.34751 1.19192 1.18362 0.94368 1.05047 0.91203 1.24734 1.00736 0.95630 0.99817 1.69647 1.47115 0.98887 1.42564 0.86282 0.80780 0.76521 0.82698 1.21264 1.21715 1.21272 1.22105 1.02027 0.95382 0.97381 0.89088 0.93561 0.93927 0.92094 0.92705 0.87388 0.85777 0.79478 0.81921 0.76250 0.91934 0.91970 0.92437 0.92167 0.92610 0.91859 0.78311 0.93471 0.91198 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.12 10.70 -35.23 -0.38 -4.50 16 3 C 0.06 0.57 6.26 37.16 0.23 0.80 16 4 C 0.12 1.25 6.06 -4.04 -0.02 1.23 16 5 N -0.26 -2.90 3.35 -57.14 -0.19 -3.09 16 6 N -0.28 -3.09 11.90 30.59 0.36 -2.73 16 7 C 0.00 0.00 12.03 -17.42 -0.21 -0.21 16 8 C -0.19 -1.67 10.50 -38.98 -0.41 -2.08 16 9 C -0.03 -0.37 6.96 -82.06 -0.57 -0.94 16 10 C 0.59 7.32 7.75 -12.64 -0.10 7.22 16 11 O -0.54 -8.03 14.39 5.26 0.08 -7.96 16 12 N -0.71 -7.84 5.07 -54.96 -0.28 -8.12 16 13 C 0.15 1.99 2.42 -67.93 -0.16 1.82 16 14 H 0.09 1.30 7.66 -51.93 -0.40 0.90 16 15 C -0.12 -1.60 5.50 -26.73 -0.15 -1.74 16 16 C -0.11 -1.58 5.92 -26.73 -0.16 -1.73 16 17 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 18 C 0.18 3.44 2.77 -67.95 -0.19 3.25 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -17.36 5.12 -53.45 -0.27 -17.64 16 21 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 25 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C -0.13 -1.93 4.85 -26.75 -0.13 -2.06 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.12 1.41 6.52 -51.93 -0.34 1.07 16 37 H 0.19 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.16 1.00 7.58 -52.49 -0.40 0.60 16 39 H 0.40 3.54 7.63 -40.82 -0.31 3.22 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.38 9.74 7.80 -40.82 -0.32 9.42 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -32.35 400.76 -8.15 -40.51 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -8.07 Total: 9.94 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.15 Total: -2.62 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.35 Total: -58.47 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.30 Total: -12.46 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.35 -8.15 -40.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981160067.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.710 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds