Wall clock time and date at job start Tue Mar 31 2020 19:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42898 * 114.00272 * 2 1 4 4 C 1.52998 * 109.47851 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47680 * 180.02562 * 4 3 2 6 6 N 1.28439 * 125.18632 * 264.53210 * 5 4 3 7 7 C 1.30870 * 110.92670 * 180.02562 * 6 5 4 8 8 C 1.39676 * 107.85954 * 359.77566 * 7 6 5 9 9 C 1.36594 * 125.19189 * 84.55171 * 5 4 3 10 10 C 1.47163 * 126.88180 * 359.95450 * 9 5 4 11 11 O 1.21624 * 120.00510 * 5.36260 * 10 9 5 12 12 N 1.34777 * 119.99872 * 185.37350 * 10 9 5 13 13 C 1.46500 * 119.99866 * 174.72963 * 12 10 9 14 14 H 1.08997 * 109.47369 * 324.99149 * 13 12 10 15 15 C 1.52999 * 109.47116 * 85.00105 * 13 12 10 16 16 C 1.53006 * 109.46892 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47193 * 299.99600 * 16 15 13 18 18 C 1.53002 * 109.47372 * 60.00258 * 17 16 15 19 19 H 1.08996 * 109.47392 * 59.99655 * 18 17 16 20 20 N 1.46500 * 109.47480 * 180.02562 * 18 17 16 21 21 C 1.36931 * 119.99668 * 274.99983 * 20 18 17 22 22 H 1.07993 * 120.00490 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99847 * 179.71960 * 21 20 18 24 24 N 1.31622 * 119.99823 * 0.28245 * 23 21 20 25 25 Si 1.86796 * 120.00026 * 180.27168 * 23 21 20 26 26 H 1.48499 * 109.47119 * 60.00834 * 25 23 21 27 27 H 1.48502 * 109.46761 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47356 * 300.00377 * 25 23 21 29 29 C 1.53006 * 109.46830 * 204.99572 * 13 12 10 30 30 H 1.09006 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47636 * 299.99928 * 1 2 3 32 32 H 1.09005 * 109.47515 * 60.00018 * 1 2 3 33 33 H 1.09003 * 109.46890 * 60.00008 * 3 2 1 34 34 H 1.09002 * 109.47020 * 299.99900 * 3 2 1 35 35 H 1.09004 * 109.46722 * 59.99449 * 4 3 2 36 36 H 1.08998 * 109.46956 * 300.00470 * 4 3 2 37 37 H 1.07997 * 126.07227 * 180.02562 * 7 6 5 38 38 H 1.07997 * 127.32252 * 180.26813 * 8 7 6 39 39 H 0.97004 * 120.00117 * 354.72772 * 12 10 9 40 40 H 1.08996 * 109.47748 * 59.99853 * 15 13 12 41 41 H 1.09001 * 109.46640 * 299.99013 * 15 13 12 42 42 H 1.08998 * 109.46855 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.47041 * 59.99803 * 16 15 13 44 44 H 1.09004 * 109.47292 * 300.00049 * 17 16 15 45 45 H 1.08997 * 109.47283 * 180.02562 * 17 16 15 46 46 H 0.97004 * 119.99643 * 94.99861 * 20 18 17 47 47 H 0.97003 * 119.99998 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.47287 * 60.00131 * 29 13 12 49 49 H 1.09004 * 109.47419 * 299.99967 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 7 4.5233 3.1591 -1.0447 7 6 5.0118 4.3299 -0.7232 8 6 4.9222 4.4651 0.6641 9 6 4.3551 3.2846 1.1116 10 6 4.0490 2.9244 2.5053 11 8 3.6337 1.8121 2.7688 12 7 4.2289 3.8272 3.4897 13 6 3.8165 3.5097 4.8591 14 1 2.9138 2.8994 4.8345 15 6 4.9349 2.7381 5.5625 16 6 4.5044 2.4070 6.9930 17 6 4.2230 3.7040 7.7540 18 6 3.1047 4.4758 7.0506 19 1 2.2018 3.8656 7.0263 20 7 2.8356 5.7181 7.7790 21 6 1.9806 5.7131 8.8485 22 1 1.5049 4.7934 9.1554 23 6 1.7301 6.8891 9.5423 24 7 2.3103 8.0099 9.1686 25 14 0.5696 6.8809 11.0061 26 1 1.0894 5.9555 12.0447 27 1 0.4722 8.2520 11.5681 28 1 -0.7756 6.4289 10.5687 29 6 3.5347 4.8065 5.6205 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8566 0.6439 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 5.4094 5.0632 -1.4092 38 1 5.2311 5.3106 1.2609 39 1 4.6314 4.6873 3.2914 40 1 5.8376 3.3484 5.5872 41 1 5.1355 1.8141 5.0201 42 1 5.3009 1.8569 7.4939 43 1 3.6015 1.7968 6.9686 44 1 5.1259 4.3143 7.7783 45 1 3.9168 3.4682 8.7731 46 1 3.2632 6.5441 7.5036 47 1 2.1355 8.8316 9.6537 48 1 2.7381 5.3563 5.1194 49 1 4.4375 5.4169 5.6452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981160067.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:28 Heat of formation + Delta-G solvation = -24.022209 kcal Electronic energy + Delta-G solvation = -29272.234015 eV Core-core repulsion = 25235.145783 eV Total energy + Delta-G solvation = -4037.088232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.60679 -40.93750 -39.22781 -39.05225 -36.31609 -35.21174 -34.62508 -32.97468 -32.22354 -30.45187 -30.31852 -29.30969 -27.31779 -25.72351 -25.06707 -24.27613 -23.27399 -22.83400 -21.83063 -21.30268 -20.63660 -19.38390 -18.82176 -17.84775 -17.44028 -17.21494 -17.09898 -16.78328 -16.31951 -16.05059 -15.88140 -15.50963 -15.44839 -15.27469 -14.97065 -14.89075 -14.82610 -14.51496 -14.20470 -13.89457 -13.57816 -13.40879 -13.15075 -12.89530 -12.78924 -12.64544 -12.39114 -12.28313 -12.17280 -12.03696 -11.96156 -11.86948 -11.64308 -11.54616 -11.38749 -11.01267 -10.85866 -10.84954 -10.40091 -10.14204 -9.99964 -8.98264 -7.92626 -5.20059 0.15407 1.14462 1.48308 1.50160 1.56161 1.61973 2.01330 2.12703 2.57672 2.84894 3.40526 3.46262 3.49421 3.64884 3.75129 3.86889 3.93463 4.04573 4.07394 4.13276 4.26824 4.32549 4.38615 4.39947 4.42816 4.51313 4.53465 4.54650 4.59262 4.65923 4.68816 4.76282 4.78167 4.85231 5.02709 5.11596 5.18554 5.24069 5.36741 5.40949 5.50132 5.52016 5.54858 5.64999 5.67184 5.95063 6.30123 6.39981 6.98158 7.07709 7.36742 8.12845 8.36327 9.30487 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.002392 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.565651 B =11703.016965 C =12271.444117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.064 3.936 4 C 0.123 3.877 5 N -0.266 5.266 6 N -0.297 5.297 7 C 0.001 3.999 8 C -0.172 4.172 9 C -0.057 4.057 10 C 0.588 3.412 11 O -0.567 6.567 12 N -0.694 5.694 13 C 0.164 3.836 14 H 0.072 0.928 15 C -0.117 4.117 16 C -0.106 4.106 17 C -0.127 4.127 18 C 0.178 3.822 19 H 0.036 0.964 20 N -0.735 5.735 21 C -0.237 4.237 22 H 0.072 0.928 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.967 3.033 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.280 1.280 29 C -0.115 4.115 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.221 0.779 38 H 0.193 0.807 39 H 0.416 0.584 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.040 0.960 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.063 0.937 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.407 -11.385 -21.680 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.014 4.014 4 C 0.003 3.997 5 N -0.055 5.055 6 N -0.129 5.129 7 C -0.175 4.175 8 C -0.201 4.201 9 C -0.184 4.184 10 C 0.374 3.626 11 O -0.446 6.446 12 N -0.345 5.345 13 C 0.059 3.941 14 H 0.090 0.910 15 C -0.155 4.155 16 C -0.145 4.145 17 C -0.167 4.167 18 C 0.069 3.931 19 H 0.054 0.946 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.090 0.910 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.796 3.204 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.206 1.206 29 C -0.154 4.154 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.238 0.762 38 H 0.210 0.790 39 H 0.254 0.746 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.767 -13.243 -22.263 26.339 hybrid contribution -0.490 1.672 1.581 2.353 sum 4.277 -11.571 -20.682 24.081 Atomic orbital electron populations 1.22988 0.78621 1.04471 1.00825 1.87757 1.22073 1.26596 1.95597 1.22505 0.92502 0.85685 1.00695 1.21756 0.92492 0.78496 1.06994 1.45551 1.42972 1.14618 1.02389 1.73237 1.16499 1.09298 1.13890 1.24258 1.02799 0.94619 0.95789 1.22756 1.03699 0.97506 0.96138 1.21544 1.11795 0.95671 0.89436 1.17103 0.77438 0.84449 0.83594 1.90804 1.47795 1.21763 1.84252 1.45642 1.62388 1.19173 1.07315 1.20808 0.97843 0.96002 0.79444 0.90960 1.21819 0.98187 1.00144 0.95372 1.21408 1.01514 0.96754 0.94809 1.22105 0.99292 0.96459 0.98877 1.20286 0.95393 0.87406 0.90021 0.94578 1.42557 1.53709 1.06581 1.34629 1.19537 1.17833 0.94242 1.05335 0.91035 1.25470 1.02894 0.95537 1.02699 1.69789 1.48964 0.99212 1.43890 0.85309 0.79114 0.76138 0.79812 1.20598 1.22208 1.20619 1.21879 1.02218 0.96358 0.94952 0.87438 0.93966 0.92591 0.93947 0.92055 0.86203 0.87205 0.76244 0.78969 0.74610 0.90623 0.91884 0.90683 0.92335 0.92715 0.94126 0.79368 0.94080 0.91818 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -8.60 10.70 -148.98 -1.59 -10.19 16 3 C 0.06 1.34 6.26 71.98 0.45 1.79 16 4 C 0.12 2.55 6.06 86.38 0.52 3.08 16 5 N -0.27 -5.79 3.35 -334.69 -1.12 -6.91 16 6 N -0.30 -6.13 11.90 -57.14 -0.68 -6.81 16 7 C 0.00 0.02 12.03 85.18 1.02 1.05 16 8 C -0.17 -2.60 10.50 22.66 0.24 -2.36 16 9 C -0.06 -1.20 6.96 40.79 0.28 -0.92 16 10 C 0.59 14.13 7.75 86.59 0.67 14.80 16 11 O -0.57 -17.00 14.39 -4.11 -0.06 -17.05 16 12 N -0.69 -14.25 5.07 -446.06 -2.26 -16.51 16 13 C 0.16 4.07 2.42 44.99 0.11 4.18 16 14 H 0.07 2.09 7.66 -2.39 -0.02 2.07 16 15 C -0.12 -2.76 5.50 30.60 0.17 -2.59 16 16 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 17 C -0.13 -4.23 5.50 30.59 0.17 -4.06 16 18 C 0.18 6.60 2.77 44.98 0.12 6.72 16 19 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 20 N -0.74 -35.53 5.12 -323.01 -1.65 -37.19 16 21 C -0.24 -12.93 9.93 84.04 0.83 -12.09 16 22 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 23 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 24 N -0.97 -57.99 13.06 21.65 0.28 -57.71 16 25 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 C -0.12 -3.31 4.85 30.58 0.15 -3.16 16 30 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.04 1.02 8.08 -2.39 -0.02 1.01 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.11 2.58 6.52 -2.39 -0.02 2.56 16 37 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.19 1.58 7.58 -2.91 -0.02 1.56 16 39 H 0.42 6.22 7.63 -92.70 -0.71 5.51 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.37 19.23 7.80 -92.71 -0.72 18.50 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -70.26 400.76 1.11 -69.15 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.47 Total: 33.72 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 6.64 Total: 1.81 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -5.43 Total: -125.13 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -1.65 Total: -27.25 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.26 1.11 -69.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981160067.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.124 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds