Wall clock time and date at job start Tue Mar 31 2020 19:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00066 * 2 1 4 4 C 1.52994 * 109.47104 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46936 * 179.97438 * 4 3 2 6 6 N 1.28449 * 125.19401 * 274.94666 * 5 4 3 7 7 C 1.30864 * 110.92742 * 180.28130 * 6 5 4 8 8 C 1.39670 * 107.86191 * 359.71216 * 7 6 5 9 9 C 1.36607 * 125.18880 * 94.73018 * 5 4 3 10 10 C 1.47160 * 126.88407 * 0.02562 * 9 5 4 11 11 O 1.21629 * 119.99970 * 4.67529 * 10 9 5 12 12 N 1.34773 * 119.99869 * 184.67254 * 10 9 5 13 13 C 1.46502 * 120.00030 * 174.90907 * 12 10 9 14 14 H 1.08998 * 109.46701 * 35.00795 * 13 12 10 15 15 C 1.52992 * 109.47181 * 275.00454 * 13 12 10 16 16 C 1.53007 * 109.46970 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46888 * 60.00325 * 16 15 13 18 18 C 1.53002 * 109.46711 * 299.99487 * 17 16 15 19 19 H 1.08993 * 109.47443 * 300.00433 * 18 17 16 20 20 N 1.46504 * 109.46702 * 179.97438 * 18 17 16 21 21 C 1.36942 * 119.99475 * 85.00526 * 20 18 17 22 22 H 1.07997 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99664 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99583 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00335 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46619 * 89.99932 * 25 23 21 27 27 H 1.48497 * 109.47152 * 210.00314 * 25 23 21 28 28 H 1.48502 * 109.47072 * 330.00545 * 25 23 21 29 29 C 1.52999 * 109.46898 * 155.00060 * 13 12 10 30 30 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47318 * 299.99673 * 1 2 3 32 32 H 1.08995 * 109.47277 * 60.00392 * 1 2 3 33 33 H 1.09003 * 109.46731 * 59.99759 * 3 2 1 34 34 H 1.09003 * 109.47123 * 300.00279 * 3 2 1 35 35 H 1.08998 * 109.47369 * 60.00227 * 4 3 2 36 36 H 1.08995 * 109.47356 * 299.99813 * 4 3 2 37 37 H 1.07997 * 126.06377 * 179.75265 * 7 6 5 38 38 H 1.08000 * 127.31814 * 180.02562 * 8 7 6 39 39 H 0.97006 * 120.00363 * 355.19057 * 12 10 9 40 40 H 1.08998 * 109.47582 * 299.99802 * 15 13 12 41 41 H 1.09004 * 109.47547 * 60.00092 * 15 13 12 42 42 H 1.09000 * 109.47007 * 179.97438 * 16 15 13 43 43 H 1.08993 * 109.47144 * 299.99967 * 16 15 13 44 44 H 1.08993 * 109.47520 * 59.99873 * 17 16 15 45 45 H 1.09002 * 109.46554 * 180.02562 * 17 16 15 46 46 H 0.96996 * 120.00293 * 264.99834 * 20 18 17 47 47 H 0.97002 * 120.00128 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.47432 * 300.00170 * 29 13 12 49 49 H 1.08998 * 109.46844 * 60.00823 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 7 4.3492 3.2358 -1.0473 7 6 4.8961 4.3808 -0.7271 8 6 5.0399 4.4133 0.6618 9 6 4.5360 3.2050 1.1110 10 6 4.4584 2.7444 2.5065 11 8 4.0740 1.6174 2.7544 12 7 4.8133 3.5714 3.5098 13 6 4.6311 3.1540 4.9022 14 1 4.8110 2.0823 4.9867 15 6 3.2009 3.4677 5.3457 16 6 3.0105 3.0312 6.7998 17 6 3.9982 3.7856 7.6922 18 6 5.4285 3.4717 7.2486 19 1 5.6082 2.4000 7.3327 20 7 6.3743 4.1945 8.1027 21 6 6.7668 3.6553 9.2987 22 1 6.3789 2.6975 9.6125 23 6 7.6633 4.3399 10.1078 24 7 8.0410 3.8214 11.2570 25 14 8.3348 5.9963 9.5648 26 1 7.4454 7.0774 10.0601 27 1 9.6990 6.1837 10.1207 28 1 8.3938 6.0444 8.0817 29 6 5.6189 3.9087 5.7942 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 5.1842 5.1621 -1.4147 38 1 5.4556 5.2118 1.2585 39 1 5.1855 4.4446 3.3100 40 1 3.0210 4.5394 5.2612 41 1 2.4972 2.9300 4.7103 42 1 1.9917 3.2551 7.1159 43 1 3.1902 1.9595 6.8839 44 1 3.8186 4.8573 7.6081 45 1 3.8629 3.4742 8.7280 46 1 6.7225 5.0549 7.8210 47 1 8.6677 4.2995 11.8223 48 1 6.6379 3.6852 5.4782 49 1 5.4390 4.9804 5.7097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981160068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:33 Heat of formation + Delta-G solvation = 2.623410 kcal Electronic energy + Delta-G solvation = -29251.211404 eV Core-core repulsion = 25215.278613 eV Total energy + Delta-G solvation = -4035.932791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.89291 -39.95867 -38.39381 -38.05240 -35.07578 -34.20317 -33.45810 -31.50011 -31.30097 -29.69867 -29.34781 -28.21609 -26.72009 -24.33576 -23.66406 -23.29997 -22.32062 -21.73864 -20.64898 -20.37787 -19.60755 -18.37706 -17.49803 -17.08754 -16.50180 -16.46314 -16.25109 -15.83771 -15.22343 -15.06609 -14.71064 -14.55065 -14.38318 -14.11796 -13.90266 -13.83800 -13.66917 -13.30573 -13.22264 -12.74357 -12.50894 -12.33031 -12.31238 -11.94844 -11.75741 -11.31665 -11.16874 -11.10777 -11.02357 -10.91216 -10.49231 -10.39204 -10.37811 -10.16168 -10.09971 -9.84902 -9.62194 -9.59464 -9.42615 -9.14280 -8.92610 -7.30315 -5.78907 -3.14955 0.92394 1.87054 2.27731 2.87459 2.95446 3.34510 3.36992 3.43169 3.52075 4.15264 4.29060 4.46130 4.56477 4.58785 4.73828 4.79614 4.83689 4.92149 4.92585 4.94929 5.14280 5.18089 5.25340 5.26959 5.34180 5.39495 5.41477 5.44476 5.54335 5.56542 5.71812 5.74505 5.86252 6.00057 6.10693 6.13257 6.14703 6.29783 6.32719 6.40269 6.43370 6.58740 6.61273 6.84100 6.98364 7.22096 7.69844 7.90958 7.97373 8.39974 9.18150 9.90478 10.09827 11.39359 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.002418 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.307287 B =11577.817928 C =12723.373244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.056 3.944 4 C 0.115 3.885 5 N -0.255 5.255 6 N -0.278 5.278 7 C 0.000 4.000 8 C -0.187 4.187 9 C -0.033 4.033 10 C 0.589 3.411 11 O -0.536 6.536 12 N -0.706 5.706 13 C 0.150 3.850 14 H 0.094 0.906 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.189 3.811 19 H 0.058 0.942 20 N -0.748 5.748 21 C -0.243 4.243 22 H 0.091 0.909 23 C 0.004 3.996 24 N -0.933 5.933 25 Si 0.885 3.115 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 C -0.134 4.134 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.188 0.812 38 H 0.163 0.837 39 H 0.402 0.598 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.071 0.929 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 -0.040 -25.744 28.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C -0.022 4.022 4 C -0.006 4.006 5 N -0.044 5.044 6 N -0.110 5.110 7 C -0.176 4.176 8 C -0.216 4.216 9 C -0.161 4.161 10 C 0.373 3.627 11 O -0.413 6.413 12 N -0.356 5.356 13 C 0.046 3.954 14 H 0.112 0.888 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.178 4.178 18 C 0.079 3.921 19 H 0.076 0.924 20 N -0.390 5.390 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.192 4.192 24 N -0.581 5.581 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.173 4.173 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.205 0.795 38 H 0.180 0.820 39 H 0.237 0.763 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.636 -1.970 -26.240 29.638 hybrid contribution 0.793 2.542 0.252 2.675 sum -12.843 0.572 -25.989 28.995 Atomic orbital electron populations 1.22791 0.79991 1.03226 1.00264 1.87806 1.20484 1.26403 1.95523 1.22617 0.92507 0.85789 1.01288 1.21948 0.92553 0.78355 1.07728 1.45516 1.42443 1.14291 1.02153 1.73236 1.18336 1.05676 1.13722 1.23614 1.02998 0.95895 0.95099 1.22307 1.06206 0.97338 0.95789 1.21534 1.09401 0.95167 0.89989 1.16919 0.77833 0.84946 0.82959 1.90800 1.47451 1.18705 1.84360 1.45849 1.63994 1.19696 1.06076 1.21109 0.95432 1.00921 0.77948 0.88761 1.21904 0.95795 1.01332 0.97269 1.21481 0.99436 1.00689 0.93708 1.22264 0.96149 0.99584 0.99774 1.20075 0.88794 0.96437 0.86830 0.92400 1.42759 1.52533 1.22287 1.21430 1.19070 1.20971 1.03929 0.93277 0.89140 1.24684 0.99642 0.98326 0.96562 1.69700 1.37298 1.39104 1.12005 0.86544 0.78612 0.85425 0.77877 1.21146 1.21799 1.20368 1.22152 0.98696 0.99976 0.96426 0.89036 0.93682 0.93905 0.92468 0.92493 0.87521 0.84973 0.79489 0.81975 0.76299 0.91919 0.92201 0.92261 0.91875 0.92712 0.91301 0.80711 0.93059 0.91034 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -3.85 10.70 -35.23 -0.38 -4.23 16 3 C 0.06 0.53 6.26 37.15 0.23 0.76 16 4 C 0.11 1.15 6.34 -4.04 -0.03 1.13 16 5 N -0.26 -2.79 3.35 -57.14 -0.19 -2.98 16 6 N -0.28 -2.98 11.90 30.59 0.36 -2.61 16 7 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -1.58 10.50 -38.98 -0.41 -1.99 16 9 C -0.03 -0.35 6.96 -82.06 -0.57 -0.92 16 10 C 0.59 7.09 7.76 -12.64 -0.10 6.99 16 11 O -0.54 -7.90 14.21 5.25 0.07 -7.83 16 12 N -0.71 -7.40 5.06 -54.97 -0.28 -7.68 16 13 C 0.15 1.85 2.49 -67.93 -0.17 1.68 16 14 H 0.09 1.34 7.51 -51.93 -0.39 0.95 16 15 C -0.12 -1.48 5.49 -26.73 -0.15 -1.63 16 16 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 17 C -0.14 -2.22 5.50 -26.73 -0.15 -2.36 16 18 C 0.19 3.36 2.77 -67.90 -0.19 3.17 16 19 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 20 N -0.75 -16.81 4.93 -53.40 -0.26 -17.08 16 21 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 24 N -0.93 -28.95 13.97 55.49 0.78 -28.17 16 25 Si 0.88 21.60 27.73 -169.99 -4.71 16.88 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 29 C -0.13 -1.85 4.86 -26.70 -0.13 -1.98 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.13 1.51 5.97 -51.93 -0.31 1.20 16 37 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.16 0.89 7.58 -52.49 -0.40 0.50 16 39 H 0.40 3.22 7.64 -40.82 -0.31 2.91 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.36 7.92 5.66 -40.82 -0.23 7.69 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -33.55 397.27 -7.78 -41.33 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.99 Total: 8.84 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.16 Total: -2.46 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.41 Total: -58.52 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.30 Total: -12.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.55 -7.78 -41.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981160068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.950 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds