Wall clock time and date at job start Tue Mar 31 2020 19:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00066 * 2 1 4 4 C 1.52994 * 109.47104 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46936 * 179.97438 * 4 3 2 6 6 N 1.28449 * 125.19401 * 274.94666 * 5 4 3 7 7 C 1.30864 * 110.92742 * 180.28130 * 6 5 4 8 8 C 1.39670 * 107.86191 * 359.71216 * 7 6 5 9 9 C 1.36607 * 125.18880 * 94.73018 * 5 4 3 10 10 C 1.47160 * 126.88407 * 0.02562 * 9 5 4 11 11 O 1.21629 * 119.99970 * 4.67529 * 10 9 5 12 12 N 1.34773 * 119.99869 * 184.67254 * 10 9 5 13 13 C 1.46502 * 120.00030 * 174.90907 * 12 10 9 14 14 H 1.08998 * 109.46701 * 35.00795 * 13 12 10 15 15 C 1.52992 * 109.47181 * 275.00454 * 13 12 10 16 16 C 1.53007 * 109.46970 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46888 * 60.00325 * 16 15 13 18 18 C 1.53002 * 109.46711 * 299.99487 * 17 16 15 19 19 H 1.08993 * 109.47443 * 300.00433 * 18 17 16 20 20 N 1.46504 * 109.46702 * 179.97438 * 18 17 16 21 21 C 1.36942 * 119.99475 * 85.00526 * 20 18 17 22 22 H 1.07997 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99664 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99583 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00335 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46619 * 89.99932 * 25 23 21 27 27 H 1.48497 * 109.47152 * 210.00314 * 25 23 21 28 28 H 1.48502 * 109.47072 * 330.00545 * 25 23 21 29 29 C 1.52999 * 109.46898 * 155.00060 * 13 12 10 30 30 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47318 * 299.99673 * 1 2 3 32 32 H 1.08995 * 109.47277 * 60.00392 * 1 2 3 33 33 H 1.09003 * 109.46731 * 59.99759 * 3 2 1 34 34 H 1.09003 * 109.47123 * 300.00279 * 3 2 1 35 35 H 1.08998 * 109.47369 * 60.00227 * 4 3 2 36 36 H 1.08995 * 109.47356 * 299.99813 * 4 3 2 37 37 H 1.07997 * 126.06377 * 179.75265 * 7 6 5 38 38 H 1.08000 * 127.31814 * 180.02562 * 8 7 6 39 39 H 0.97006 * 120.00363 * 355.19057 * 12 10 9 40 40 H 1.08998 * 109.47582 * 299.99802 * 15 13 12 41 41 H 1.09004 * 109.47547 * 60.00092 * 15 13 12 42 42 H 1.09000 * 109.47007 * 179.97438 * 16 15 13 43 43 H 1.08993 * 109.47144 * 299.99967 * 16 15 13 44 44 H 1.08993 * 109.47520 * 59.99873 * 17 16 15 45 45 H 1.09002 * 109.46554 * 180.02562 * 17 16 15 46 46 H 0.96996 * 120.00293 * 264.99834 * 20 18 17 47 47 H 0.97002 * 120.00128 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.47432 * 300.00170 * 29 13 12 49 49 H 1.08998 * 109.46844 * 60.00823 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 7 4.3492 3.2358 -1.0473 7 6 4.8961 4.3808 -0.7271 8 6 5.0399 4.4133 0.6618 9 6 4.5360 3.2050 1.1110 10 6 4.4584 2.7444 2.5065 11 8 4.0740 1.6174 2.7544 12 7 4.8133 3.5714 3.5098 13 6 4.6311 3.1540 4.9022 14 1 4.8110 2.0823 4.9867 15 6 3.2009 3.4677 5.3457 16 6 3.0105 3.0312 6.7998 17 6 3.9982 3.7856 7.6922 18 6 5.4285 3.4717 7.2486 19 1 5.6082 2.4000 7.3327 20 7 6.3743 4.1945 8.1027 21 6 6.7668 3.6553 9.2987 22 1 6.3789 2.6975 9.6125 23 6 7.6633 4.3399 10.1078 24 7 8.0410 3.8214 11.2570 25 14 8.3348 5.9963 9.5648 26 1 7.4454 7.0774 10.0601 27 1 9.6990 6.1837 10.1207 28 1 8.3938 6.0444 8.0817 29 6 5.6189 3.9087 5.7942 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 5.1842 5.1621 -1.4147 38 1 5.4556 5.2118 1.2585 39 1 5.1855 4.4446 3.3100 40 1 3.0210 4.5394 5.2612 41 1 2.4972 2.9300 4.7103 42 1 1.9917 3.2551 7.1159 43 1 3.1902 1.9595 6.8839 44 1 3.8186 4.8573 7.6081 45 1 3.8629 3.4742 8.7280 46 1 6.7225 5.0549 7.8210 47 1 8.6677 4.2995 11.8223 48 1 6.6379 3.6852 5.4782 49 1 5.4390 4.9804 5.7097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981160068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:32 Heat of formation + Delta-G solvation = -21.525334 kcal Electronic energy + Delta-G solvation = -29252.258572 eV Core-core repulsion = 25215.278613 eV Total energy + Delta-G solvation = -4036.979959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.60762 -40.96152 -39.27957 -39.06860 -36.42434 -35.23046 -34.62680 -33.28667 -32.24141 -30.59426 -30.36635 -29.58398 -27.31321 -25.49779 -25.00648 -24.29000 -23.33073 -22.78296 -21.78729 -21.34843 -20.80751 -19.68151 -18.95582 -17.83765 -17.45533 -17.18977 -17.14184 -16.73098 -16.39367 -16.13940 -15.92435 -15.49654 -15.40889 -15.23720 -14.99880 -14.96897 -14.78030 -14.53423 -14.44812 -13.92266 -13.74103 -13.51194 -13.15054 -13.01554 -12.87242 -12.65460 -12.38647 -12.38127 -12.18601 -11.98077 -11.86734 -11.80404 -11.70110 -11.53866 -11.44332 -11.05232 -10.89446 -10.83721 -10.41319 -10.14497 -10.00930 -9.28962 -7.99272 -5.33095 0.14994 1.14397 1.40003 1.44904 1.52161 1.61929 2.00360 2.11855 2.51824 2.85397 3.31936 3.44998 3.46224 3.48785 3.74910 3.84667 3.93452 4.01650 4.07510 4.09940 4.16055 4.28046 4.36004 4.39906 4.41271 4.49570 4.52521 4.54715 4.57128 4.63479 4.68315 4.76223 4.77411 4.85143 4.97954 5.10703 5.14622 5.21100 5.35108 5.38641 5.50251 5.51101 5.62514 5.65027 5.80871 5.96543 6.24526 6.38872 6.98715 7.07494 7.11371 7.86647 8.07186 9.22415 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.002418 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.307287 B =11577.817928 C =12723.373244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.066 3.934 4 C 0.116 3.884 5 N -0.266 5.266 6 N -0.299 5.299 7 C 0.001 3.999 8 C -0.170 4.170 9 C -0.057 4.057 10 C 0.589 3.411 11 O -0.570 6.570 12 N -0.692 5.692 13 C 0.159 3.841 14 H 0.071 0.929 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.129 4.129 18 C 0.180 3.820 19 H 0.034 0.966 20 N -0.749 5.749 21 C -0.227 4.227 22 H 0.051 0.949 23 C -0.070 4.070 24 N -0.987 5.987 25 Si 0.959 3.041 26 H -0.278 1.278 27 H -0.301 1.301 28 H -0.244 1.244 29 C -0.120 4.120 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.221 0.779 38 H 0.196 0.804 39 H 0.418 0.582 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.036 0.964 46 H 0.367 0.633 47 H 0.256 0.744 48 H 0.069 0.931 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 2.907 -28.724 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.012 4.012 4 C -0.005 4.005 5 N -0.055 5.055 6 N -0.131 5.131 7 C -0.175 4.175 8 C -0.199 4.199 9 C -0.184 4.184 10 C 0.375 3.625 11 O -0.450 6.450 12 N -0.343 5.343 13 C 0.054 3.946 14 H 0.089 0.911 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.169 4.169 18 C 0.072 3.928 19 H 0.052 0.948 20 N -0.392 5.392 21 C -0.358 4.358 22 H 0.069 0.931 23 C -0.261 4.261 24 N -0.638 5.638 25 Si 0.786 3.214 26 H -0.205 1.205 27 H -0.228 1.228 28 H -0.168 1.168 29 C -0.158 4.158 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.237 0.763 38 H 0.213 0.787 39 H 0.256 0.744 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.201 0.799 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.181 0.995 -29.286 32.554 hybrid contribution 0.891 1.525 1.157 2.112 sum -13.291 2.521 -28.128 31.212 Atomic orbital electron populations 1.22996 0.78497 1.04441 1.00990 1.87780 1.22224 1.26752 1.95622 1.22502 0.92141 0.85617 1.00977 1.21866 0.92948 0.78535 1.07129 1.45559 1.43149 1.14494 1.02340 1.73233 1.19159 1.06680 1.13980 1.24265 1.01659 0.95709 0.95853 1.22757 1.04299 0.96794 0.96043 1.21536 1.11222 0.96400 0.89265 1.17120 0.77183 0.84480 0.83728 1.90793 1.49043 1.20259 1.84923 1.45588 1.63682 1.20187 1.04864 1.20819 0.95432 0.99468 0.78841 0.91057 1.21823 0.95206 1.02480 0.95882 1.21408 0.99378 0.99719 0.94109 1.22090 0.95662 1.00564 0.98545 1.20282 0.88765 0.94882 0.88888 0.94757 1.42719 1.53406 1.22754 1.20369 1.18990 1.19711 1.02309 0.94807 0.93053 1.25574 1.00725 1.03049 0.96746 1.69904 1.38744 1.41302 1.13859 0.85348 0.77013 0.79785 0.79252 1.20461 1.22773 1.16848 1.21947 0.99063 1.01451 0.93361 0.87679 0.93555 0.92543 0.93581 0.91758 0.86765 0.86823 0.76251 0.78732 0.74412 0.89923 0.92191 0.90525 0.92795 0.91557 0.94503 0.79897 0.93483 0.91212 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.08 10.70 -148.98 -1.59 -9.68 16 3 C 0.07 1.24 6.26 71.98 0.45 1.69 16 4 C 0.12 2.35 6.34 86.38 0.55 2.89 16 5 N -0.27 -5.54 3.35 -334.69 -1.12 -6.66 16 6 N -0.30 -5.82 11.90 -57.14 -0.68 -6.50 16 7 C 0.00 0.02 12.03 85.18 1.02 1.04 16 8 C -0.17 -2.25 10.50 22.66 0.24 -2.01 16 9 C -0.06 -1.12 6.96 40.78 0.28 -0.83 16 10 C 0.59 13.39 7.76 86.59 0.67 14.07 16 11 O -0.57 -16.91 14.21 -4.12 -0.06 -16.97 16 12 N -0.69 -12.70 5.06 -446.08 -2.26 -14.96 16 13 C 0.16 3.64 2.49 44.99 0.11 3.75 16 14 H 0.07 2.01 7.51 -2.39 -0.02 1.99 16 15 C -0.12 -2.46 5.49 30.59 0.17 -2.30 16 16 C -0.11 -2.67 5.92 30.60 0.18 -2.49 16 17 C -0.13 -4.05 5.50 30.60 0.17 -3.88 16 18 C 0.18 6.32 2.77 45.01 0.12 6.45 16 19 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 20 N -0.75 -33.10 4.93 -322.85 -1.59 -34.69 16 21 C -0.23 -12.72 10.41 84.03 0.87 -11.85 16 22 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.99 -63.29 13.97 21.65 0.30 -62.99 16 25 Si 0.96 44.20 27.73 68.60 1.90 46.10 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 28 H -0.24 -9.80 6.52 99.48 0.65 -9.15 16 29 C -0.12 -3.02 4.86 30.61 0.15 -2.87 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.11 2.73 5.97 -2.39 -0.01 2.71 16 37 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.20 1.13 7.58 -2.91 -0.02 1.10 16 39 H 0.42 4.98 7.64 -92.70 -0.71 4.27 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.37 15.15 5.66 -92.71 -0.52 14.63 16 47 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 48 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -76.09 397.27 1.28 -74.81 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.33 Total: 29.87 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 6.71 Total: 1.65 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.35 Total: -125.79 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.65 Total: -26.64 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.90 Total: 46.10 kcal Total: -76.09 1.28 -74.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981160068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.289 kcal (2) G-P(sol) polarization free energy of solvation -76.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds