Wall clock time and date at job start Tue Mar 31 2020 19:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99918 * 2 1 4 4 C 1.52998 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47169 * 179.97438 * 4 3 2 6 6 N 1.28438 * 125.19453 * 264.58427 * 5 4 3 7 7 C 1.30864 * 110.92796 * 179.97438 * 6 5 4 8 8 C 1.39673 * 107.86104 * 359.77249 * 7 6 5 9 9 C 1.36600 * 125.18439 * 84.55522 * 5 4 3 10 10 C 1.47159 * 126.88805 * 359.97438 * 9 5 4 11 11 O 1.21636 * 119.99894 * 5.38425 * 10 9 5 12 12 N 1.34773 * 120.00424 * 185.38340 * 10 9 5 13 13 C 1.46499 * 120.00300 * 174.72509 * 12 10 9 14 14 H 1.09004 * 109.47397 * 325.00651 * 13 12 10 15 15 C 1.53002 * 109.47030 * 85.00576 * 13 12 10 16 16 C 1.52991 * 109.47597 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47242 * 299.99802 * 16 15 13 18 18 C 1.53002 * 109.46662 * 59.99626 * 17 16 15 19 19 H 1.09007 * 109.47058 * 180.02562 * 18 17 16 20 20 N 1.46498 * 109.47195 * 60.00550 * 18 17 16 21 21 C 1.36938 * 119.99955 * 85.27091 * 20 18 17 22 22 H 1.07998 * 120.00399 * 359.72946 * 21 20 18 23 23 C 1.38818 * 119.99800 * 179.72286 * 21 20 18 24 24 N 1.31622 * 119.99823 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99755 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47332 * 60.00626 * 25 23 21 27 27 H 1.48505 * 109.46969 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47258 * 300.00161 * 25 23 21 29 29 C 1.52999 * 109.47443 * 299.99989 * 18 17 16 30 30 H 1.08998 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47043 * 299.99712 * 1 2 3 32 32 H 1.08996 * 109.46731 * 60.00097 * 1 2 3 33 33 H 1.09000 * 109.47049 * 59.99966 * 3 2 1 34 34 H 1.08996 * 109.47064 * 300.00209 * 3 2 1 35 35 H 1.09000 * 109.47007 * 60.00237 * 4 3 2 36 36 H 1.08996 * 109.47627 * 300.00161 * 4 3 2 37 37 H 1.07997 * 126.07158 * 180.02562 * 7 6 5 38 38 H 1.08000 * 127.32081 * 180.27172 * 8 7 6 39 39 H 0.96998 * 119.99972 * 354.73607 * 12 10 9 40 40 H 1.09004 * 109.47481 * 59.99683 * 15 13 12 41 41 H 1.09007 * 109.47058 * 299.99986 * 15 13 12 42 42 H 1.09007 * 109.47595 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.47235 * 59.99826 * 16 15 13 44 44 H 1.09004 * 109.47025 * 300.00153 * 17 16 15 45 45 H 1.08997 * 109.47499 * 179.97438 * 17 16 15 46 46 H 0.96999 * 120.00211 * 264.99421 * 20 18 17 47 47 H 0.97000 * 119.99596 * 180.02562 * 24 23 21 48 48 H 1.09004 * 109.46739 * 180.02562 * 29 18 17 49 49 H 1.08996 * 109.47149 * 300.00129 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5230 0.0000 6 7 4.5234 3.1583 -1.0451 7 6 5.0108 4.3297 -0.7247 8 6 4.9206 4.4664 0.6624 9 6 4.3543 3.2858 1.1110 10 6 4.0477 2.9271 2.5049 11 8 3.6329 1.8148 2.7695 12 7 4.2266 3.8311 3.4884 13 6 3.8135 3.5150 4.8579 14 1 2.9111 2.9041 4.8335 15 6 4.9318 2.7448 5.5630 16 6 4.5003 2.4140 6.9930 17 6 4.2169 3.7112 7.7532 18 6 3.0986 4.4815 7.0482 19 1 2.8970 5.4059 7.5894 20 7 1.8859 3.6603 7.0148 21 6 1.0281 3.6622 8.0822 22 1 1.2478 4.2657 8.9504 23 6 -0.1239 2.8884 8.0481 24 7 -0.3914 2.1526 6.9901 25 14 -1.2937 2.8905 9.5045 26 1 -1.7944 4.2693 9.7354 27 1 -2.4388 1.9885 9.2208 28 1 -0.5776 2.4146 10.7153 29 6 3.5302 4.8123 5.6180 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8575 0.6436 -0.8891 36 1 3.8568 0.6439 0.8908 37 1 5.4082 5.0625 -1.4113 38 1 5.2286 5.3128 1.2584 39 1 4.6287 4.6911 3.2894 40 1 5.8343 3.3556 5.5875 41 1 5.1334 1.8203 5.0217 42 1 5.2972 1.8657 7.4955 43 1 3.5980 1.8029 6.9682 44 1 5.1193 4.3223 7.7780 45 1 3.9091 3.4756 8.7719 46 1 1.6885 3.1183 6.2349 47 1 -1.1966 1.6123 6.9662 48 1 2.7336 5.3614 5.1160 49 1 4.4324 5.4233 5.6429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981160069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:37 Heat of formation + Delta-G solvation = 2.696706 kcal Electronic energy + Delta-G solvation = -30016.661865 eV Core-core repulsion = 25980.732253 eV Total energy + Delta-G solvation = -4035.929613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.72386 -39.74515 -38.11321 -37.90751 -34.76047 -33.91443 -33.08646 -31.29223 -30.90703 -29.46944 -29.02355 -27.99113 -26.42662 -24.12756 -23.65250 -23.22346 -22.11153 -21.86912 -20.93610 -20.07046 -18.79604 -17.88267 -17.26609 -16.86538 -16.24350 -16.15462 -15.95822 -15.57854 -14.97119 -14.82203 -14.63038 -14.47828 -14.16158 -13.88615 -13.70111 -13.64486 -13.58447 -13.15387 -12.96375 -12.39605 -12.24850 -12.06718 -11.78337 -11.69256 -11.46179 -11.40486 -11.00085 -10.91612 -10.82990 -10.75025 -10.29631 -10.20280 -10.11794 -10.04962 -9.85727 -9.60982 -9.51779 -9.40943 -9.25552 -8.93993 -8.78149 -6.94613 -5.74561 -3.03616 1.12683 2.06350 2.43496 3.11597 3.19762 3.44277 3.49015 3.49935 3.79046 4.33249 4.50535 4.60066 4.71660 4.80874 4.96165 5.06546 5.09689 5.19410 5.20867 5.30318 5.34495 5.45565 5.49616 5.52523 5.59406 5.60526 5.61977 5.68302 5.70987 5.82328 5.88440 6.07253 6.08690 6.17916 6.27197 6.33360 6.42825 6.50208 6.59090 6.62953 6.78164 6.83886 6.90164 7.00772 7.10370 7.47857 7.71062 7.87071 8.17810 8.43414 9.54570 10.11857 10.46005 11.47572 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.003374 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.313557 B = 8295.963633 C =10144.769989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.055 3.945 4 C 0.121 3.879 5 N -0.255 5.255 6 N -0.279 5.279 7 C -0.002 4.002 8 C -0.192 4.192 9 C -0.028 4.028 10 C 0.583 3.417 11 O -0.527 6.527 12 N -0.707 5.707 13 C 0.149 3.851 14 H 0.100 0.900 15 C -0.121 4.121 16 C -0.109 4.109 17 C -0.135 4.135 18 C 0.180 3.820 19 H 0.052 0.948 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 C -0.128 4.128 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.187 0.813 38 H 0.161 0.839 39 H 0.398 0.602 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.068 0.932 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.529 4.112 -14.627 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C -0.023 4.023 4 C 0.000 4.000 5 N -0.043 5.043 6 N -0.111 5.111 7 C -0.178 4.178 8 C -0.220 4.220 9 C -0.157 4.157 10 C 0.367 3.633 11 O -0.403 6.403 12 N -0.357 5.357 13 C 0.045 3.955 14 H 0.118 0.882 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.069 3.931 19 H 0.070 0.930 20 N -0.364 5.364 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.167 4.167 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.204 0.796 38 H 0.179 0.821 39 H 0.232 0.768 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.899 2.292 -15.185 18.832 hybrid contribution -0.584 1.040 1.068 1.601 sum 10.314 3.332 -14.117 17.798 Atomic orbital electron populations 1.22801 0.79848 1.03189 1.00466 1.87774 1.20618 1.26276 1.95555 1.22611 0.92237 0.86014 1.01440 1.21836 0.92758 0.78240 1.07140 1.45516 1.42153 1.14407 1.02267 1.73225 1.15916 1.08271 1.13703 1.23578 1.04176 0.94953 0.95096 1.22258 1.06210 0.97836 0.95740 1.21616 1.09551 0.94303 0.90220 1.16949 0.78363 0.85089 0.82877 1.90869 1.45543 1.20333 1.83536 1.45868 1.62915 1.18366 1.08601 1.21143 0.98685 0.97551 0.78087 0.88202 1.21852 0.97344 0.99836 0.96896 1.21359 1.01460 0.98460 0.93483 1.22183 0.98327 0.96733 1.00345 1.20156 0.87504 0.93980 0.91471 0.93034 1.42493 1.21339 1.52592 1.19964 1.19182 1.00325 1.21966 0.95658 0.91266 1.24722 0.98608 0.99859 0.97577 1.69655 1.27441 1.32171 1.28619 0.86316 0.80720 0.77184 0.82226 1.21372 1.21787 1.21329 1.22095 1.00959 0.95744 0.97911 0.89112 0.93199 0.94093 0.91890 0.92845 0.87460 0.85689 0.79615 0.82118 0.76760 0.92682 0.92113 0.93232 0.90317 0.93836 0.91974 0.78089 0.93496 0.91315 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.19 10.70 -35.23 -0.38 -5.57 16 3 C 0.05 0.71 6.26 37.16 0.23 0.94 16 4 C 0.12 1.50 6.06 -4.04 -0.02 1.48 16 5 N -0.25 -3.30 3.35 -57.14 -0.19 -3.49 16 6 N -0.28 -3.45 11.90 30.59 0.36 -3.08 16 7 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 8 C -0.19 -1.89 10.50 -38.98 -0.41 -2.30 16 9 C -0.03 -0.36 6.96 -82.06 -0.57 -0.93 16 10 C 0.58 8.58 7.75 -12.64 -0.10 8.49 16 11 O -0.53 -9.58 14.39 5.25 0.08 -9.50 16 12 N -0.71 -9.06 5.07 -54.96 -0.28 -9.34 16 13 C 0.15 2.31 2.24 -67.93 -0.15 2.16 16 14 H 0.10 1.99 6.02 -51.93 -0.31 1.68 16 15 C -0.12 -1.82 5.49 -26.73 -0.15 -1.97 16 16 C -0.11 -1.85 5.76 -26.73 -0.15 -2.00 16 17 C -0.14 -2.29 5.61 -26.73 -0.15 -2.44 16 18 C 0.18 3.32 3.10 -67.93 -0.21 3.11 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 N -0.72 -17.20 4.28 -53.42 -0.23 -17.43 16 21 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 25 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C -0.13 -1.91 5.08 -26.73 -0.14 -2.04 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.13 1.72 6.52 -51.93 -0.34 1.38 16 37 H 0.19 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.16 1.06 7.58 -52.49 -0.40 0.66 16 39 H 0.40 3.78 7.64 -40.82 -0.31 3.47 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.62 7.60 -51.93 -0.39 1.23 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.38 9.91 6.06 -40.82 -0.25 9.66 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -32.70 396.34 -8.01 -40.70 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -7.88 Total: 13.03 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.16 Total: -1.30 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.39 Total: -60.51 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.30 Total: -15.07 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.70 -8.01 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981160069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.398 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds