Wall clock time and date at job start Tue Mar 31 2020 19:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99918 * 2 1 4 4 C 1.52998 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47169 * 179.97438 * 4 3 2 6 6 N 1.28438 * 125.19453 * 264.58427 * 5 4 3 7 7 C 1.30864 * 110.92796 * 179.97438 * 6 5 4 8 8 C 1.39673 * 107.86104 * 359.77249 * 7 6 5 9 9 C 1.36600 * 125.18439 * 84.55522 * 5 4 3 10 10 C 1.47159 * 126.88805 * 359.97438 * 9 5 4 11 11 O 1.21636 * 119.99894 * 5.38425 * 10 9 5 12 12 N 1.34773 * 120.00424 * 185.38340 * 10 9 5 13 13 C 1.46499 * 120.00300 * 174.72509 * 12 10 9 14 14 H 1.09004 * 109.47397 * 325.00651 * 13 12 10 15 15 C 1.53002 * 109.47030 * 85.00576 * 13 12 10 16 16 C 1.52991 * 109.47597 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47242 * 299.99802 * 16 15 13 18 18 C 1.53002 * 109.46662 * 59.99626 * 17 16 15 19 19 H 1.09007 * 109.47058 * 180.02562 * 18 17 16 20 20 N 1.46498 * 109.47195 * 60.00550 * 18 17 16 21 21 C 1.36938 * 119.99955 * 85.27091 * 20 18 17 22 22 H 1.07998 * 120.00399 * 359.72946 * 21 20 18 23 23 C 1.38818 * 119.99800 * 179.72286 * 21 20 18 24 24 N 1.31622 * 119.99823 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99755 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47332 * 60.00626 * 25 23 21 27 27 H 1.48505 * 109.46969 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47258 * 300.00161 * 25 23 21 29 29 C 1.52999 * 109.47443 * 299.99989 * 18 17 16 30 30 H 1.08998 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47043 * 299.99712 * 1 2 3 32 32 H 1.08996 * 109.46731 * 60.00097 * 1 2 3 33 33 H 1.09000 * 109.47049 * 59.99966 * 3 2 1 34 34 H 1.08996 * 109.47064 * 300.00209 * 3 2 1 35 35 H 1.09000 * 109.47007 * 60.00237 * 4 3 2 36 36 H 1.08996 * 109.47627 * 300.00161 * 4 3 2 37 37 H 1.07997 * 126.07158 * 180.02562 * 7 6 5 38 38 H 1.08000 * 127.32081 * 180.27172 * 8 7 6 39 39 H 0.96998 * 119.99972 * 354.73607 * 12 10 9 40 40 H 1.09004 * 109.47481 * 59.99683 * 15 13 12 41 41 H 1.09007 * 109.47058 * 299.99986 * 15 13 12 42 42 H 1.09007 * 109.47595 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.47235 * 59.99826 * 16 15 13 44 44 H 1.09004 * 109.47025 * 300.00153 * 17 16 15 45 45 H 1.08997 * 109.47499 * 179.97438 * 17 16 15 46 46 H 0.96999 * 120.00211 * 264.99421 * 20 18 17 47 47 H 0.97000 * 119.99596 * 180.02562 * 24 23 21 48 48 H 1.09004 * 109.46739 * 180.02562 * 29 18 17 49 49 H 1.08996 * 109.47149 * 300.00129 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5230 0.0000 6 7 4.5234 3.1583 -1.0451 7 6 5.0108 4.3297 -0.7247 8 6 4.9206 4.4664 0.6624 9 6 4.3543 3.2858 1.1110 10 6 4.0477 2.9271 2.5049 11 8 3.6329 1.8148 2.7695 12 7 4.2266 3.8311 3.4884 13 6 3.8135 3.5150 4.8579 14 1 2.9111 2.9041 4.8335 15 6 4.9318 2.7448 5.5630 16 6 4.5003 2.4140 6.9930 17 6 4.2169 3.7112 7.7532 18 6 3.0986 4.4815 7.0482 19 1 2.8970 5.4059 7.5894 20 7 1.8859 3.6603 7.0148 21 6 1.0281 3.6622 8.0822 22 1 1.2478 4.2657 8.9504 23 6 -0.1239 2.8884 8.0481 24 7 -0.3914 2.1526 6.9901 25 14 -1.2937 2.8905 9.5045 26 1 -1.7944 4.2693 9.7354 27 1 -2.4388 1.9885 9.2208 28 1 -0.5776 2.4146 10.7153 29 6 3.5302 4.8123 5.6180 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8575 0.6436 -0.8891 36 1 3.8568 0.6439 0.8908 37 1 5.4082 5.0625 -1.4113 38 1 5.2286 5.3128 1.2584 39 1 4.6287 4.6911 3.2894 40 1 5.8343 3.3556 5.5875 41 1 5.1334 1.8203 5.0217 42 1 5.2972 1.8657 7.4955 43 1 3.5980 1.8029 6.9682 44 1 5.1193 4.3223 7.7780 45 1 3.9091 3.4756 8.7719 46 1 1.6885 3.1183 6.2349 47 1 -1.1966 1.6123 6.9662 48 1 2.7336 5.3614 5.1160 49 1 4.4324 5.4233 5.6429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981160069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:36 Heat of formation + Delta-G solvation = -20.693035 kcal Electronic energy + Delta-G solvation = -30017.676121 eV Core-core repulsion = 25980.732253 eV Total energy + Delta-G solvation = -4036.943868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.60244 -40.96849 -39.31357 -39.08566 -36.13759 -35.09965 -34.58691 -32.76454 -32.19146 -30.44234 -30.32724 -29.52274 -27.35057 -25.70320 -25.08299 -24.30310 -23.30342 -23.05934 -22.05866 -21.17085 -20.07828 -19.23502 -18.98118 -17.87199 -17.31422 -17.22946 -17.08163 -16.67893 -16.53192 -16.04117 -15.88922 -15.55093 -15.37815 -15.32149 -15.16641 -14.89277 -14.77183 -14.49285 -13.91736 -13.76387 -13.42406 -13.40541 -13.17434 -12.85165 -12.78751 -12.67090 -12.60514 -12.42659 -12.18392 -12.16784 -11.86017 -11.80021 -11.57782 -11.50388 -11.22474 -10.92904 -10.88641 -10.80584 -10.38836 -10.13234 -9.96738 -8.93989 -7.89657 -5.16812 0.17084 1.14317 1.46542 1.49220 1.55020 1.64178 2.03278 2.15455 2.58618 2.82687 3.43601 3.45236 3.51735 3.72761 3.78471 3.92467 3.93382 4.04071 4.08157 4.14994 4.19489 4.35183 4.37602 4.38141 4.46353 4.48866 4.52221 4.57764 4.66611 4.71538 4.73019 4.78192 4.83519 4.86574 5.03303 5.13107 5.20154 5.31868 5.42505 5.45682 5.49960 5.54254 5.63816 5.66502 5.69577 5.91755 6.32215 6.44305 7.01479 7.13713 7.38053 8.18081 8.38022 9.33619 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.003374 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.313557 B = 8295.963633 C =10144.769989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.064 3.936 4 C 0.125 3.875 5 N -0.269 5.269 6 N -0.298 5.298 7 C 0.003 3.997 8 C -0.167 4.167 9 C -0.058 4.058 10 C 0.580 3.420 11 O -0.573 6.573 12 N -0.690 5.690 13 C 0.157 3.843 14 H 0.045 0.955 15 C -0.110 4.110 16 C -0.106 4.106 17 C -0.126 4.126 18 C 0.167 3.833 19 H 0.055 0.945 20 N -0.734 5.734 21 C -0.232 4.232 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.967 3.033 26 H -0.277 1.277 27 H -0.302 1.302 28 H -0.280 1.280 29 C -0.115 4.115 30 H 0.108 0.892 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.200 0.800 39 H 0.419 0.581 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.039 0.961 46 H 0.370 0.630 47 H 0.246 0.754 48 H 0.062 0.938 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.113 7.181 -15.227 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.014 4.014 4 C 0.004 3.996 5 N -0.058 5.058 6 N -0.130 5.130 7 C -0.173 4.173 8 C -0.196 4.196 9 C -0.185 4.185 10 C 0.366 3.634 11 O -0.453 6.453 12 N -0.341 5.341 13 C 0.053 3.947 14 H 0.063 0.937 15 C -0.148 4.148 16 C -0.145 4.145 17 C -0.166 4.166 18 C 0.059 3.941 19 H 0.073 0.927 20 N -0.375 5.375 21 C -0.364 4.364 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.624 5.624 25 Si 0.797 3.203 26 H -0.203 1.203 27 H -0.228 1.228 28 H -0.206 1.206 29 C -0.153 4.153 30 H 0.126 0.874 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.242 0.758 38 H 0.217 0.783 39 H 0.257 0.743 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.106 0.894 45 H 0.058 0.942 46 H 0.203 0.797 47 H 0.055 0.945 48 H 0.081 0.919 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.542 5.441 -15.764 21.483 hybrid contribution -1.296 0.163 1.220 1.788 sum 12.246 5.604 -14.544 19.822 Atomic orbital electron populations 1.22977 0.78704 1.04479 1.00680 1.87749 1.22004 1.26676 1.95580 1.22515 0.92769 0.85671 1.00485 1.21699 0.92251 0.78789 1.06814 1.45516 1.43127 1.14554 1.02571 1.73225 1.16529 1.09472 1.13761 1.24313 1.02664 0.94503 0.95806 1.22771 1.03499 0.97210 0.96097 1.21560 1.11870 0.95921 0.89154 1.17307 0.77511 0.84580 0.84049 1.90856 1.47618 1.22458 1.84340 1.45559 1.62412 1.18960 1.07189 1.20802 0.96877 0.97357 0.79698 0.93689 1.21753 0.98353 0.99674 0.95055 1.21289 0.99765 0.98168 0.95241 1.22063 0.99250 0.96799 0.98505 1.20502 0.86048 0.93288 0.94270 0.92667 1.42734 1.22909 1.53182 1.18677 1.19623 1.00147 1.20300 0.96300 0.90413 1.25495 1.00820 1.00641 1.00124 1.69843 1.27792 1.33884 1.30858 0.85301 0.78404 0.77234 0.79385 1.20265 1.22831 1.20621 1.21973 1.02856 0.95521 0.95000 0.87382 0.94786 0.92024 0.94791 0.91571 0.85860 0.87795 0.75807 0.78297 0.74268 0.88824 0.93894 0.91501 0.95410 0.89446 0.94233 0.79718 0.94487 0.91945 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -11.47 10.70 -148.98 -1.59 -13.07 16 3 C 0.06 1.75 6.26 71.98 0.45 2.20 16 4 C 0.13 3.28 6.06 86.38 0.52 3.80 16 5 N -0.27 -6.89 3.35 -334.70 -1.12 -8.01 16 6 N -0.30 -6.84 11.90 -57.14 -0.68 -7.52 16 7 C 0.00 0.05 12.03 85.18 1.02 1.08 16 8 C -0.17 -2.70 10.50 22.66 0.24 -2.46 16 9 C -0.06 -1.42 6.96 40.79 0.28 -1.14 16 10 C 0.58 17.30 7.75 86.59 0.67 17.97 16 11 O -0.57 -22.44 14.39 -4.14 -0.06 -22.50 16 12 N -0.69 -16.71 5.07 -446.05 -2.26 -18.97 16 13 C 0.16 4.82 2.24 44.99 0.10 4.92 16 14 H 0.04 1.92 6.02 -2.38 -0.01 1.91 16 15 C -0.11 -3.18 5.49 30.59 0.17 -3.01 16 16 C -0.11 -3.56 5.76 30.59 0.18 -3.39 16 17 C -0.13 -4.02 5.61 30.60 0.17 -3.85 16 18 C 0.17 5.98 3.10 44.99 0.14 6.12 16 19 H 0.06 1.95 8.08 -2.38 -0.02 1.93 16 20 N -0.73 -36.00 4.28 -322.93 -1.38 -37.38 16 21 C -0.23 -12.69 9.93 84.03 0.83 -11.86 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 24 N -0.97 -61.25 13.06 21.65 0.28 -60.96 16 25 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 28 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 29 C -0.12 -3.15 5.08 30.59 0.16 -2.99 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.10 3.14 6.52 -2.39 -0.02 3.13 16 37 H 0.23 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.20 1.51 7.58 -2.91 -0.02 1.48 16 39 H 0.42 6.40 7.64 -92.71 -0.71 5.70 16 40 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.04 1.40 8.09 -2.38 -0.02 1.38 16 42 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.03 1.20 7.60 -2.38 -0.02 1.18 16 44 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.37 20.25 6.06 -92.71 -0.56 19.68 16 47 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 48 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 49 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -77.50 396.34 1.56 -75.94 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.31 Total: 38.49 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.65 Total: 5.16 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -5.16 Total: -132.84 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.65 Total: -35.56 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -77.50 1.56 -75.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981160069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.247 kcal (2) G-P(sol) polarization free energy of solvation -77.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds