Wall clock time and date at job start Tue Mar 31 2020 19:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00143 * 2 1 4 4 C 1.53002 * 109.47261 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47158 * 179.97438 * 4 3 2 6 6 C 1.35040 * 124.88356 * 124.99732 * 5 4 3 7 7 C 1.35365 * 107.22750 * 180.02562 * 6 5 4 8 8 C 1.41504 * 105.50395 * 0.02562 * 7 6 5 9 9 C 1.47709 * 126.51587 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00150 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99690 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99606 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46734 * 35.00837 * 12 11 9 14 14 C 1.52995 * 109.47445 * 275.00315 * 12 11 9 15 15 C 1.53001 * 109.47290 * 300.00202 * 14 12 11 16 16 C 1.53006 * 109.46783 * 300.00138 * 15 14 12 17 17 C 1.52995 * 109.47320 * 59.99881 * 16 15 14 18 18 H 1.09002 * 109.47058 * 60.00054 * 17 16 15 19 19 N 1.46501 * 109.47320 * 179.97438 * 17 16 15 20 20 C 1.36937 * 119.99814 * 275.00258 * 19 17 16 21 21 H 1.07995 * 120.00121 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99675 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99691 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00294 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47032 * 89.99817 * 24 22 20 26 26 H 1.48497 * 109.47263 * 210.00269 * 24 22 20 27 27 H 1.48502 * 109.46831 * 330.00069 * 24 22 20 28 28 C 1.53001 * 109.47290 * 299.99809 * 17 16 15 29 29 N 1.28463 * 124.88821 * 305.00375 * 5 4 3 30 30 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47255 * 300.00051 * 1 2 3 32 32 H 1.09004 * 109.46820 * 60.00493 * 1 2 3 33 33 H 1.09000 * 109.47096 * 59.99818 * 3 2 1 34 34 H 1.08995 * 109.47278 * 300.00107 * 3 2 1 35 35 H 1.09000 * 109.46860 * 60.00107 * 4 3 2 36 36 H 1.08996 * 109.46971 * 300.00164 * 4 3 2 37 37 H 1.07997 * 126.38271 * 0.27397 * 6 5 4 38 38 H 1.07997 * 127.24583 * 179.97438 * 7 6 5 39 39 H 0.96996 * 120.00089 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.47305 * 60.00274 * 14 12 11 41 41 H 1.09005 * 109.47020 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47317 * 180.02562 * 15 14 12 43 43 H 1.08992 * 109.47112 * 60.00006 * 15 14 12 44 44 H 1.09002 * 109.47011 * 299.99906 * 16 15 14 45 45 H 1.09004 * 109.46801 * 180.02562 * 16 15 14 46 46 H 0.96997 * 120.00365 * 95.00052 * 19 17 16 47 47 H 0.96998 * 119.99411 * 179.97438 * 23 22 20 48 48 H 1.08992 * 109.47112 * 299.99994 * 28 17 16 49 49 H 1.08999 * 109.47317 * 179.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0256 2.9706 0.9075 7 6 5.3348 4.2447 0.5709 8 6 4.5720 4.5257 -0.5874 9 6 4.5568 5.7945 -1.3434 10 8 5.2482 6.7264 -0.9810 11 7 3.7762 5.9191 -2.4351 12 6 3.7607 7.1778 -3.1846 13 1 4.7561 7.6217 -3.1698 14 6 2.7625 8.1423 -2.5411 15 6 1.3653 7.5192 -2.5618 16 6 0.9502 7.2459 -4.0089 17 6 1.9484 6.2814 -4.6524 18 1 1.9599 5.3449 -4.0947 19 7 1.5506 6.0193 -6.0378 20 6 0.6305 5.0432 -6.3129 21 1 0.1983 4.4663 -5.5086 22 6 0.2532 4.7952 -7.6255 23 7 -0.6309 3.8566 -7.8900 24 14 1.0000 5.7935 -9.0166 25 1 2.2301 5.1195 -9.5045 26 1 0.0214 5.9031 -10.1281 27 1 1.3424 7.1515 -8.5228 28 6 3.3456 6.9046 -4.6317 29 7 3.8783 3.4395 -0.8638 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6438 0.8908 37 1 5.4232 2.4143 1.7435 38 1 6.0189 4.9076 1.0797 39 1 3.2242 5.1757 -2.7240 40 1 3.0582 8.3370 -1.5102 41 1 2.7506 9.0787 -3.0990 42 1 0.6540 8.2065 -2.1037 43 1 1.3768 6.5828 -2.0041 44 1 0.9387 8.1824 -4.5666 45 1 -0.0454 6.8024 -4.0237 46 1 1.9389 6.5372 -6.7601 47 1 -0.8948 3.6836 -8.8072 48 1 3.3341 7.8410 -5.1893 49 1 4.0568 6.2172 -5.0897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981220755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:42 Heat of formation + Delta-G solvation = 5.959907 kcal Electronic energy + Delta-G solvation = -29594.372490 eV Core-core repulsion = 25558.584381 eV Total energy + Delta-G solvation = -4035.788110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.85035 -39.90050 -38.32843 -37.84377 -34.57582 -34.22583 -33.01376 -31.35161 -30.97322 -30.09833 -29.26953 -28.28925 -26.68198 -24.67054 -23.47241 -22.69773 -22.00629 -21.61985 -20.92555 -20.25369 -18.85865 -18.17429 -17.54910 -17.18667 -16.65222 -16.32737 -15.90008 -15.50022 -15.37925 -14.97264 -14.72945 -14.47314 -14.13600 -13.96961 -13.75144 -13.60453 -13.46336 -13.25922 -12.80161 -12.63134 -12.38454 -12.22448 -11.99752 -11.90260 -11.78819 -11.68425 -11.24780 -11.01823 -10.95630 -10.89227 -10.41741 -10.22994 -10.08994 -10.07866 -10.01832 -9.68258 -9.56964 -9.46746 -9.26862 -8.92570 -8.81859 -7.27070 -5.77672 -3.12892 1.47922 1.95954 2.04620 3.25280 3.37507 3.40555 3.44220 3.45472 3.50175 4.11654 4.44901 4.56227 4.57656 4.58917 4.76531 4.88892 5.01335 5.05549 5.07587 5.13161 5.14770 5.23050 5.35859 5.42318 5.46277 5.47852 5.51842 5.58835 5.64389 5.65028 5.81611 5.90867 6.00030 6.06012 6.16534 6.22809 6.26911 6.43224 6.46647 6.49461 6.65484 6.66675 6.68259 6.88712 7.02004 7.53806 7.82441 7.98601 8.31298 8.41527 9.20239 9.93007 10.12876 11.40759 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.003603 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.592638 B = 7769.275472 C =10130.050904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.048 3.952 4 C 0.124 3.876 5 N -0.281 5.281 6 C -0.017 4.017 7 C -0.179 4.179 8 C -0.013 4.013 9 C 0.604 3.396 10 O -0.541 6.541 11 N -0.704 5.704 12 C 0.152 3.848 13 H 0.087 0.913 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.136 4.136 17 C 0.184 3.816 18 H 0.051 0.949 19 N -0.749 5.749 20 C -0.241 4.241 21 H 0.089 0.911 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.138 4.138 29 N -0.255 5.255 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.410 0.590 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.076 0.924 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.847 -2.707 20.433 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.070 5.070 6 C -0.159 4.159 7 C -0.207 4.207 8 C -0.174 4.174 9 C 0.388 3.612 10 O -0.416 6.416 11 N -0.357 5.357 12 C 0.047 3.953 13 H 0.105 0.895 14 C -0.166 4.166 15 C -0.154 4.154 16 C -0.176 4.176 17 C 0.075 3.925 18 H 0.069 0.931 19 N -0.391 5.391 20 C -0.371 4.371 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.583 5.583 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.176 4.176 29 N -0.091 5.091 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.200 0.800 38 H 0.180 0.820 39 H 0.247 0.753 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.438 -2.976 19.906 21.824 hybrid contribution 0.429 0.724 -0.623 1.047 sum 8.867 -2.252 19.282 21.342 Atomic orbital electron populations 1.22818 0.79544 1.03249 1.00742 1.87753 1.20908 1.26523 1.95662 1.22645 0.91906 0.85829 1.02538 1.21706 0.93327 0.78364 1.06234 1.45341 1.31163 1.11586 1.18954 1.22881 0.98011 0.96630 0.98425 1.21774 1.04583 0.95952 0.98388 1.22038 1.01710 0.94112 0.99539 1.16882 0.79561 0.84752 0.79979 1.90766 1.43051 1.39402 1.68402 1.46075 1.44854 1.17078 1.27643 1.20969 0.99744 0.83886 0.90691 0.89525 1.21911 0.95407 0.98341 1.00974 1.21502 0.95647 1.00296 0.97961 1.22240 1.01055 1.00398 0.93941 1.20132 0.90216 0.95499 0.86689 0.93075 1.42785 1.51281 1.43174 1.01818 1.19059 1.14964 1.09441 0.93654 0.89273 1.24659 0.99021 0.98536 0.96895 1.69702 1.35337 1.34228 1.19006 0.86560 0.78733 0.80242 0.83050 1.21126 1.21829 1.20295 1.22169 0.98894 1.02227 0.94331 1.73568 1.22436 0.97675 1.15397 0.89091 0.93872 0.93087 0.92583 0.90844 0.87682 0.86986 0.80034 0.81975 0.75298 0.91862 0.91102 0.92710 0.92424 0.92661 0.91663 0.80653 0.93110 0.90546 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -3.74 10.70 -35.23 -0.38 -4.11 16 3 C 0.05 0.43 6.04 37.16 0.22 0.65 16 4 C 0.12 0.93 6.77 -4.04 -0.03 0.90 16 5 N -0.28 -2.80 3.41 -61.33 -0.21 -3.00 16 6 C -0.02 -0.15 11.40 -17.16 -0.20 -0.34 16 7 C -0.18 -1.98 10.81 -39.36 -0.43 -2.40 16 8 C -0.01 -0.18 7.13 -82.77 -0.59 -0.77 16 9 C 0.60 9.16 7.79 -12.39 -0.10 9.07 16 10 O -0.54 -9.33 16.59 5.30 0.09 -9.24 16 11 N -0.70 -10.14 4.23 -54.79 -0.23 -10.37 16 12 C 0.15 2.13 2.78 -67.93 -0.19 1.94 16 13 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 14 C -0.13 -1.71 5.60 -26.73 -0.15 -1.86 16 15 C -0.12 -1.64 5.77 -26.73 -0.15 -1.80 16 16 C -0.14 -2.32 5.50 -26.73 -0.15 -2.46 16 17 C 0.18 3.39 2.60 -67.93 -0.18 3.21 16 18 H 0.05 0.98 6.44 -51.93 -0.33 0.65 16 19 N -0.75 -17.23 4.93 -53.43 -0.26 -17.49 16 20 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 21 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 24 Si 0.88 21.98 27.73 -169.99 -4.71 17.27 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 28 C -0.14 -2.10 5.08 -26.73 -0.14 -2.24 16 29 N -0.25 -3.31 11.36 33.42 0.38 -2.93 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.11 0.50 8.04 -51.93 -0.42 0.09 16 37 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.41 6.03 6.59 -40.82 -0.27 5.76 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.84 7.60 -51.93 -0.39 0.44 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -34.19 398.03 -7.73 -41.92 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.97 Total: 11.79 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.20 Total: -1.52 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.45 Total: -62.10 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.29 Total: -13.36 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.19 -7.73 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981220755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.880 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds