Wall clock time and date at job start Tue Mar 31 2020 19:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00143 * 2 1 4 4 C 1.53002 * 109.47261 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47158 * 179.97438 * 4 3 2 6 6 C 1.35040 * 124.88356 * 124.99732 * 5 4 3 7 7 C 1.35365 * 107.22750 * 180.02562 * 6 5 4 8 8 C 1.41504 * 105.50395 * 0.02562 * 7 6 5 9 9 C 1.47709 * 126.51587 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00150 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99690 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99606 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46734 * 35.00837 * 12 11 9 14 14 C 1.52995 * 109.47445 * 275.00315 * 12 11 9 15 15 C 1.53001 * 109.47290 * 300.00202 * 14 12 11 16 16 C 1.53006 * 109.46783 * 300.00138 * 15 14 12 17 17 C 1.52995 * 109.47320 * 59.99881 * 16 15 14 18 18 H 1.09002 * 109.47058 * 60.00054 * 17 16 15 19 19 N 1.46501 * 109.47320 * 179.97438 * 17 16 15 20 20 C 1.36937 * 119.99814 * 275.00258 * 19 17 16 21 21 H 1.07995 * 120.00121 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99675 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99691 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00294 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47032 * 89.99817 * 24 22 20 26 26 H 1.48497 * 109.47263 * 210.00269 * 24 22 20 27 27 H 1.48502 * 109.46831 * 330.00069 * 24 22 20 28 28 C 1.53001 * 109.47290 * 299.99809 * 17 16 15 29 29 N 1.28463 * 124.88821 * 305.00375 * 5 4 3 30 30 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47255 * 300.00051 * 1 2 3 32 32 H 1.09004 * 109.46820 * 60.00493 * 1 2 3 33 33 H 1.09000 * 109.47096 * 59.99818 * 3 2 1 34 34 H 1.08995 * 109.47278 * 300.00107 * 3 2 1 35 35 H 1.09000 * 109.46860 * 60.00107 * 4 3 2 36 36 H 1.08996 * 109.46971 * 300.00164 * 4 3 2 37 37 H 1.07997 * 126.38271 * 0.27397 * 6 5 4 38 38 H 1.07997 * 127.24583 * 179.97438 * 7 6 5 39 39 H 0.96996 * 120.00089 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.47305 * 60.00274 * 14 12 11 41 41 H 1.09005 * 109.47020 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47317 * 180.02562 * 15 14 12 43 43 H 1.08992 * 109.47112 * 60.00006 * 15 14 12 44 44 H 1.09002 * 109.47011 * 299.99906 * 16 15 14 45 45 H 1.09004 * 109.46801 * 180.02562 * 16 15 14 46 46 H 0.96997 * 120.00365 * 95.00052 * 19 17 16 47 47 H 0.96998 * 119.99411 * 179.97438 * 23 22 20 48 48 H 1.08992 * 109.47112 * 299.99994 * 28 17 16 49 49 H 1.08999 * 109.47317 * 179.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0256 2.9706 0.9075 7 6 5.3348 4.2447 0.5709 8 6 4.5720 4.5257 -0.5874 9 6 4.5568 5.7945 -1.3434 10 8 5.2482 6.7264 -0.9810 11 7 3.7762 5.9191 -2.4351 12 6 3.7607 7.1778 -3.1846 13 1 4.7561 7.6217 -3.1698 14 6 2.7625 8.1423 -2.5411 15 6 1.3653 7.5192 -2.5618 16 6 0.9502 7.2459 -4.0089 17 6 1.9484 6.2814 -4.6524 18 1 1.9599 5.3449 -4.0947 19 7 1.5506 6.0193 -6.0378 20 6 0.6305 5.0432 -6.3129 21 1 0.1983 4.4663 -5.5086 22 6 0.2532 4.7952 -7.6255 23 7 -0.6309 3.8566 -7.8900 24 14 1.0000 5.7935 -9.0166 25 1 2.2301 5.1195 -9.5045 26 1 0.0214 5.9031 -10.1281 27 1 1.3424 7.1515 -8.5228 28 6 3.3456 6.9046 -4.6317 29 7 3.8783 3.4395 -0.8638 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6438 0.8908 37 1 5.4232 2.4143 1.7435 38 1 6.0189 4.9076 1.0797 39 1 3.2242 5.1757 -2.7240 40 1 3.0582 8.3370 -1.5102 41 1 2.7506 9.0787 -3.0990 42 1 0.6540 8.2065 -2.1037 43 1 1.3768 6.5828 -2.0041 44 1 0.9387 8.1824 -4.5666 45 1 -0.0454 6.8024 -4.0237 46 1 1.9389 6.5372 -6.7601 47 1 -0.8948 3.6836 -8.8072 48 1 3.3341 7.8410 -5.1893 49 1 4.0568 6.2172 -5.0897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981220755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:41 Heat of formation + Delta-G solvation = -18.245151 kcal Electronic energy + Delta-G solvation = -29595.422100 eV Core-core repulsion = 25558.584381 eV Total energy + Delta-G solvation = -4036.837720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.67024 -41.11076 -39.22875 -38.97380 -36.27007 -35.01389 -34.41791 -33.24560 -31.83808 -31.12709 -30.36503 -29.77115 -27.38133 -25.63880 -25.29848 -23.65174 -23.18411 -22.45187 -22.42376 -21.29197 -20.26376 -19.51216 -18.93956 -18.04502 -17.48683 -17.07415 -16.80695 -16.76798 -16.67903 -16.33545 -15.94664 -15.60974 -15.39839 -15.15092 -14.94555 -14.70912 -14.67449 -14.26561 -14.22199 -14.02593 -13.73690 -13.10959 -13.09292 -13.01626 -13.00424 -12.85836 -12.64820 -12.37976 -12.36506 -12.02795 -11.87032 -11.81476 -11.63913 -11.54352 -11.21040 -11.05591 -10.89535 -10.80761 -10.34666 -10.11881 -9.94999 -9.29586 -8.01099 -5.34015 0.51647 1.18901 1.33697 1.38777 1.41811 1.49015 2.19545 2.38810 2.49667 2.76765 3.30279 3.38871 3.45895 3.74647 3.80498 3.83703 3.90504 3.98944 4.10530 4.17391 4.22698 4.26762 4.32067 4.41507 4.46775 4.51536 4.59718 4.63330 4.65732 4.68360 4.73638 4.77422 4.80853 4.81851 4.92438 5.06304 5.15243 5.19314 5.33536 5.36079 5.46812 5.48738 5.61987 5.78860 5.82299 5.98333 6.23003 6.43528 6.88166 7.09561 7.17028 7.85618 8.05253 9.20612 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.003603 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.592638 B = 7769.275472 C =10130.050904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.279 5.279 6 C 0.009 3.991 7 C -0.198 4.198 8 C -0.042 4.042 9 C 0.603 3.397 10 O -0.566 6.566 11 N -0.704 5.704 12 C 0.155 3.845 13 H 0.092 0.908 14 C -0.120 4.120 15 C -0.106 4.106 16 C -0.127 4.127 17 C 0.179 3.821 18 H 0.037 0.963 19 N -0.751 5.751 20 C -0.225 4.225 21 H 0.054 0.946 22 C -0.064 4.064 23 N -0.986 5.986 24 Si 0.954 3.046 25 H -0.280 1.280 26 H -0.299 1.299 27 H -0.249 1.249 28 C -0.125 4.125 29 N -0.284 5.284 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.153 0.847 37 H 0.232 0.768 38 H 0.170 0.830 39 H 0.407 0.593 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.035 0.965 46 H 0.366 0.634 47 H 0.256 0.744 48 H 0.094 0.906 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.682 -1.908 21.915 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.027 4.027 4 C 0.004 3.996 5 N -0.068 5.068 6 C -0.134 4.134 7 C -0.226 4.226 8 C -0.201 4.201 9 C 0.388 3.612 10 O -0.444 6.444 11 N -0.355 5.355 12 C 0.050 3.950 13 H 0.110 0.890 14 C -0.159 4.159 15 C -0.144 4.144 16 C -0.167 4.167 17 C 0.071 3.929 18 H 0.055 0.945 19 N -0.394 5.394 20 C -0.356 4.356 21 H 0.072 0.928 22 C -0.255 4.255 23 N -0.636 5.636 24 Si 0.781 3.219 25 H -0.206 1.206 26 H -0.226 1.226 27 H -0.174 1.174 28 C -0.164 4.164 29 N -0.121 5.121 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.171 0.829 37 H 0.248 0.752 38 H 0.188 0.812 39 H 0.243 0.757 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.199 0.801 47 H 0.065 0.935 48 H 0.112 0.888 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.294 -2.144 21.423 23.864 hybrid contribution -0.190 0.355 -0.949 1.031 sum 10.105 -1.788 20.474 22.902 Atomic orbital electron populations 1.22958 0.78891 1.04330 1.00718 1.87730 1.21731 1.26753 1.95654 1.22587 0.93092 0.85489 1.01497 1.21945 0.92106 0.77401 1.08185 1.45623 1.31021 1.11698 1.18484 1.23568 0.95856 0.95734 0.98201 1.22030 1.05113 0.97452 0.98029 1.22008 1.03378 0.93892 1.00829 1.17134 0.78961 0.85189 0.79873 1.90733 1.44110 1.40445 1.69142 1.46108 1.44634 1.17107 1.27646 1.20979 1.00228 0.83953 0.89815 0.88983 1.21867 0.94083 0.98711 1.01216 1.21405 0.96804 1.00481 0.95740 1.22073 0.98925 0.99813 0.95907 1.20330 0.92580 0.95696 0.84272 0.94513 1.42779 1.50408 1.42231 1.03944 1.18992 1.14626 1.09305 0.92698 0.92784 1.25469 1.00088 1.00209 0.99764 1.69888 1.37683 1.36700 1.19372 0.85428 0.77523 0.79856 0.79083 1.20641 1.22552 1.17373 1.22044 0.96219 1.02603 0.95535 1.73523 1.23317 0.98319 1.16968 0.87527 0.92586 0.94447 0.91879 0.93705 0.87869 0.82912 0.75180 0.81209 0.75679 0.91872 0.89187 0.91085 0.93262 0.91895 0.94573 0.80092 0.93481 0.88761 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -7.40 10.70 -148.98 -1.59 -8.99 16 3 C 0.05 0.89 6.04 71.98 0.44 1.32 16 4 C 0.12 1.61 6.77 86.38 0.58 2.19 16 5 N -0.28 -5.09 3.41 -347.95 -1.19 -6.28 16 6 C 0.01 0.12 11.40 83.54 0.95 1.07 16 7 C -0.20 -4.10 10.81 22.41 0.24 -3.86 16 8 C -0.04 -1.13 7.13 42.46 0.30 -0.83 16 9 C 0.60 18.35 7.79 86.75 0.68 19.03 16 10 O -0.57 -19.45 16.59 -3.94 -0.07 -19.51 16 11 N -0.70 -20.31 4.23 -445.52 -1.88 -22.20 16 12 C 0.15 4.15 2.78 44.99 0.13 4.27 16 13 H 0.09 2.45 7.58 -2.39 -0.02 2.43 16 14 C -0.12 -2.98 5.60 30.59 0.17 -2.81 16 15 C -0.11 -2.89 5.77 30.60 0.18 -2.72 16 16 C -0.13 -4.27 5.50 30.59 0.17 -4.10 16 17 C 0.18 6.56 2.60 44.99 0.12 6.68 16 18 H 0.04 1.46 6.44 -2.39 -0.02 1.44 16 19 N -0.75 -34.34 4.93 -322.94 -1.59 -35.93 16 20 C -0.23 -12.75 10.41 84.03 0.87 -11.87 16 21 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 22 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 23 N -0.99 -63.33 13.97 21.65 0.30 -63.03 16 24 Si 0.95 45.44 27.73 68.60 1.90 47.34 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 27 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 28 C -0.13 -3.65 5.08 30.60 0.16 -3.49 16 29 N -0.28 -7.39 11.36 -48.18 -0.55 -7.94 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.04 1.02 8.08 -2.39 -0.02 1.00 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.15 0.77 8.04 -2.39 -0.02 0.75 16 37 H 0.23 0.76 8.06 -2.91 -0.02 0.73 16 38 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.41 12.36 6.59 -92.71 -0.61 11.75 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.43 7.60 -2.39 -0.02 1.41 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 46 H 0.37 15.98 5.66 -92.71 -0.52 15.45 16 47 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 48 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -76.85 398.03 1.80 -75.06 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.24 Total: 38.24 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 6.70 Total: 3.24 kcal Atomic # 7 Polarization: -130.46 SS G_CDS: -4.91 Total: -135.37 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.66 Total: -28.50 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Total: -76.85 1.80 -75.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981220755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.813 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds