Wall clock time and date at job start Tue Mar 31 2020 19:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99836 * 2 1 4 4 C 1.52998 * 109.47102 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47303 * 179.97438 * 4 3 2 6 6 C 1.35035 * 124.88657 * 125.02421 * 5 4 3 7 7 C 1.35368 * 107.22925 * 179.76063 * 6 5 4 8 8 C 1.41500 * 105.50366 * 0.35934 * 7 6 5 9 9 C 1.47711 * 126.52091 * 179.90219 * 8 7 6 10 10 O 1.21574 * 119.99571 * 359.70565 * 9 8 7 11 11 N 1.34772 * 120.00236 * 179.71260 * 9 8 7 12 12 C 1.46496 * 120.00151 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47021 * 324.99552 * 12 11 9 14 14 C 1.53005 * 109.47414 * 84.99440 * 12 11 9 15 15 C 1.52997 * 109.47452 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 12 17 17 C 1.53000 * 109.47233 * 60.00194 * 16 15 14 18 18 H 1.09002 * 109.47398 * 59.99826 * 17 16 15 19 19 N 1.46500 * 109.47023 * 179.97438 * 17 16 15 20 20 C 1.36931 * 119.99971 * 274.99678 * 19 17 16 21 21 H 1.08005 * 120.00425 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00390 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99556 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00553 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47011 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47353 * 119.99952 * 24 22 20 27 27 H 1.48499 * 109.47342 * 239.99965 * 24 22 20 28 28 C 1.52997 * 109.47060 * 299.99657 * 17 16 15 29 29 N 1.28472 * 124.88533 * 305.01894 * 5 4 3 30 30 H 1.09001 * 109.47356 * 60.00251 * 1 2 3 31 31 H 1.09003 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46754 * 299.99847 * 1 2 3 33 33 H 1.08999 * 109.47118 * 59.99967 * 3 2 1 34 34 H 1.09006 * 109.46999 * 299.99687 * 3 2 1 35 35 H 1.08999 * 109.47349 * 59.99878 * 4 3 2 36 36 H 1.09004 * 109.46753 * 300.00158 * 4 3 2 37 37 H 1.08004 * 126.38642 * 0.03117 * 6 5 4 38 38 H 1.07998 * 127.24494 * 180.23894 * 7 6 5 39 39 H 0.96994 * 119.99727 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.46935 * 60.00059 * 14 12 11 41 41 H 1.09001 * 109.46812 * 300.00401 * 14 12 11 42 42 H 1.08993 * 109.47194 * 179.97438 * 15 14 12 43 43 H 1.09002 * 109.46695 * 59.99734 * 15 14 12 44 44 H 1.08992 * 109.47063 * 299.99823 * 16 15 14 45 45 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 46 46 H 0.97004 * 120.00223 * 94.99655 * 19 17 16 47 47 H 0.96997 * 119.99679 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.47853 * 180.02562 * 28 17 16 49 49 H 1.09002 * 109.47153 * 300.00319 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 5.0266 2.9702 0.9053 7 6 5.3399 4.2425 0.5655 8 6 4.5724 4.5255 -0.5891 9 6 4.5577 5.7940 -1.3458 10 8 5.2506 6.7253 -0.9844 11 7 3.7763 5.9190 -2.4366 12 6 3.7614 7.1773 -3.1867 13 1 3.8754 8.0132 -2.4965 14 6 4.9145 7.1854 -4.1923 15 6 4.8993 8.4997 -4.9753 16 6 3.5705 8.6332 -5.7219 17 6 2.4174 8.6253 -4.7163 18 1 2.5317 9.4609 -4.0258 19 7 1.1452 8.7537 -5.4312 20 6 0.6705 9.9935 -5.7667 21 1 1.2338 10.8768 -5.5040 22 6 -0.5353 10.1153 -6.4436 23 7 -1.2220 9.0390 -6.7634 24 14 -1.1825 11.8066 -6.9020 25 1 -0.2301 12.8449 -6.4328 26 1 -1.3281 11.8979 -8.3770 27 1 -2.5042 12.0215 -6.2599 28 6 2.4326 7.3109 -3.9334 29 7 3.8773 3.4399 -0.8645 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8901 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 5.4226 2.4147 1.7426 38 1 6.0289 4.9032 1.0706 39 1 3.2237 5.1759 -2.7251 40 1 4.8004 6.3495 -4.8826 41 1 5.8611 7.0906 -3.6603 42 1 5.7211 8.5056 -5.6913 43 1 5.0136 9.3353 -4.2847 44 1 3.4563 7.7977 -6.4124 45 1 3.5596 9.5699 -6.2794 46 1 0.6390 7.9605 -5.6669 47 1 -2.0647 9.1241 -7.2361 48 1 1.6109 7.3049 -3.2173 49 1 2.3183 6.4753 -4.6239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981220756.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:46 Heat of formation + Delta-G solvation = -1.052827 kcal Electronic energy + Delta-G solvation = -28617.394525 eV Core-core repulsion = 24581.302320 eV Total energy + Delta-G solvation = -4036.092205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.95563 -39.71161 -38.50403 -37.79809 -34.62559 -34.35680 -33.27102 -31.14161 -31.03854 -30.11718 -29.06517 -27.74363 -26.83099 -24.75532 -23.69678 -22.80942 -21.83015 -21.72476 -20.88645 -20.06484 -19.30072 -18.20545 -17.36075 -16.97731 -16.70726 -16.46318 -16.11471 -15.96207 -15.25376 -14.88669 -14.51362 -14.35004 -14.24104 -13.94916 -13.72799 -13.65673 -13.44419 -13.38273 -13.04642 -12.64722 -12.52236 -12.17804 -12.09133 -12.01514 -11.87174 -11.16791 -10.96803 -10.88439 -10.86760 -10.66995 -10.32188 -10.29528 -10.27966 -10.14599 -10.07928 -9.69727 -9.58488 -9.55569 -9.36303 -8.90669 -8.81831 -6.93280 -5.74691 -3.02934 1.36802 1.86279 1.92839 3.14797 3.32182 3.40601 3.44872 3.50976 3.52848 3.97587 4.28391 4.43487 4.47846 4.60450 4.61541 4.83498 4.85781 4.94708 5.05731 5.06447 5.15052 5.18779 5.22039 5.37241 5.41671 5.51023 5.54435 5.66379 5.74379 5.80654 5.93613 6.02726 6.07839 6.12110 6.19893 6.36696 6.36767 6.39379 6.49477 6.57638 6.60437 6.69250 6.78124 7.01296 7.16996 7.44942 7.72842 7.74028 8.26199 8.44194 9.55368 10.13156 10.47984 11.48208 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.002365 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.044337 B =11834.602713 C =13837.266901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.283 5.283 6 C -0.016 4.016 7 C -0.178 4.178 8 C -0.010 4.010 9 C 0.602 3.398 10 O -0.534 6.534 11 N -0.709 5.709 12 C 0.149 3.851 13 H 0.089 0.911 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.184 3.816 18 H 0.049 0.951 19 N -0.725 5.725 20 C -0.234 4.234 21 H 0.071 0.929 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.129 4.129 29 N -0.261 5.261 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.405 0.595 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.068 0.932 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.288 -19.875 16.415 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.158 4.158 7 C -0.206 4.206 8 C -0.171 4.171 9 C 0.386 3.614 10 O -0.409 6.409 11 N -0.359 5.359 12 C 0.045 3.955 13 H 0.107 0.893 14 C -0.163 4.163 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.073 3.927 18 H 0.067 0.933 19 N -0.365 5.365 20 C -0.365 4.365 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.168 4.168 29 N -0.097 5.097 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.239 0.761 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.997 -19.730 15.894 27.619 hybrid contribution -0.520 0.647 0.058 0.832 sum 10.477 -19.083 15.951 26.989 Atomic orbital electron populations 1.22814 0.79565 1.03250 1.00701 1.87761 1.20881 1.26599 1.95661 1.22652 0.92014 0.85720 1.02522 1.21683 0.93195 0.78466 1.06214 1.45312 1.31282 1.11524 1.19132 1.22891 0.97840 0.96713 0.98390 1.21811 1.04417 0.95969 0.98367 1.22079 1.01347 0.94058 0.99573 1.16884 0.79897 0.84794 0.79793 1.90795 1.42317 1.39159 1.68616 1.46021 1.44902 1.17254 1.27751 1.21073 0.95828 0.85697 0.92939 0.89278 1.21889 0.98051 0.98701 0.97637 1.21484 0.98381 0.96629 0.98797 1.22287 0.94135 1.01946 0.99341 1.20101 0.86926 0.93731 0.91939 0.93309 1.42414 1.20270 1.06343 1.67458 1.19298 1.02288 0.85431 1.29532 0.91078 1.24736 0.97774 0.96998 1.01624 1.69674 1.16008 1.26707 1.45893 0.86134 0.78610 0.83779 0.77803 1.20534 1.21934 1.21950 1.22085 0.95158 1.00259 0.99283 1.73500 1.22700 0.97746 1.15730 0.93338 0.89060 0.93718 0.92418 0.91072 0.87831 0.86935 0.79966 0.81855 0.76074 0.92036 0.92089 0.92504 0.92127 0.92664 0.91901 0.78346 0.93647 0.91308 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.87 10.70 -35.23 -0.38 -3.25 16 3 C 0.05 0.33 6.04 37.16 0.22 0.55 16 4 C 0.13 0.69 6.77 -4.05 -0.03 0.67 16 5 N -0.28 -2.37 3.41 -61.33 -0.21 -2.58 16 6 C -0.02 -0.12 11.40 -17.17 -0.20 -0.32 16 7 C -0.18 -1.83 10.81 -39.36 -0.43 -2.25 16 8 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 9 C 0.60 8.89 7.79 -12.39 -0.10 8.80 16 10 O -0.53 -9.37 16.59 5.30 0.09 -9.28 16 11 N -0.71 -9.70 5.07 -54.79 -0.28 -9.98 16 12 C 0.15 2.22 2.45 -67.93 -0.17 2.05 16 13 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 14 C -0.12 -1.77 5.49 -26.73 -0.15 -1.92 16 15 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 16 C -0.14 -2.45 5.50 -26.73 -0.15 -2.60 16 17 C 0.18 3.63 2.77 -67.93 -0.19 3.44 16 18 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 19 N -0.72 -18.06 5.12 -53.43 -0.27 -18.33 16 20 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 24 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 C -0.13 -2.13 4.86 -26.73 -0.13 -2.26 16 29 N -0.26 -2.94 11.36 33.42 0.38 -2.56 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.11 0.33 8.04 -51.93 -0.42 -0.09 16 37 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.40 4.98 8.33 -40.82 -0.34 4.64 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -33.96 405.57 -8.23 -42.20 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -8.20 Total: 9.97 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.18 Total: -2.30 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.34 Total: -60.95 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.29 Total: -12.53 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.96 -8.23 -42.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981220756.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.144 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds