Wall clock time and date at job start Tue Mar 31 2020 19:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99836 * 2 1 4 4 C 1.52998 * 109.47102 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47303 * 179.97438 * 4 3 2 6 6 C 1.35035 * 124.88657 * 125.02421 * 5 4 3 7 7 C 1.35368 * 107.22925 * 179.76063 * 6 5 4 8 8 C 1.41500 * 105.50366 * 0.35934 * 7 6 5 9 9 C 1.47711 * 126.52091 * 179.90219 * 8 7 6 10 10 O 1.21574 * 119.99571 * 359.70565 * 9 8 7 11 11 N 1.34772 * 120.00236 * 179.71260 * 9 8 7 12 12 C 1.46496 * 120.00151 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47021 * 324.99552 * 12 11 9 14 14 C 1.53005 * 109.47414 * 84.99440 * 12 11 9 15 15 C 1.52997 * 109.47452 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 12 17 17 C 1.53000 * 109.47233 * 60.00194 * 16 15 14 18 18 H 1.09002 * 109.47398 * 59.99826 * 17 16 15 19 19 N 1.46500 * 109.47023 * 179.97438 * 17 16 15 20 20 C 1.36931 * 119.99971 * 274.99678 * 19 17 16 21 21 H 1.08005 * 120.00425 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00390 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99556 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00553 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47011 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47353 * 119.99952 * 24 22 20 27 27 H 1.48499 * 109.47342 * 239.99965 * 24 22 20 28 28 C 1.52997 * 109.47060 * 299.99657 * 17 16 15 29 29 N 1.28472 * 124.88533 * 305.01894 * 5 4 3 30 30 H 1.09001 * 109.47356 * 60.00251 * 1 2 3 31 31 H 1.09003 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46754 * 299.99847 * 1 2 3 33 33 H 1.08999 * 109.47118 * 59.99967 * 3 2 1 34 34 H 1.09006 * 109.46999 * 299.99687 * 3 2 1 35 35 H 1.08999 * 109.47349 * 59.99878 * 4 3 2 36 36 H 1.09004 * 109.46753 * 300.00158 * 4 3 2 37 37 H 1.08004 * 126.38642 * 0.03117 * 6 5 4 38 38 H 1.07998 * 127.24494 * 180.23894 * 7 6 5 39 39 H 0.96994 * 119.99727 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.46935 * 60.00059 * 14 12 11 41 41 H 1.09001 * 109.46812 * 300.00401 * 14 12 11 42 42 H 1.08993 * 109.47194 * 179.97438 * 15 14 12 43 43 H 1.09002 * 109.46695 * 59.99734 * 15 14 12 44 44 H 1.08992 * 109.47063 * 299.99823 * 16 15 14 45 45 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 46 46 H 0.97004 * 120.00223 * 94.99655 * 19 17 16 47 47 H 0.96997 * 119.99679 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.47853 * 180.02562 * 28 17 16 49 49 H 1.09002 * 109.47153 * 300.00319 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 5.0266 2.9702 0.9053 7 6 5.3399 4.2425 0.5655 8 6 4.5724 4.5255 -0.5891 9 6 4.5577 5.7940 -1.3458 10 8 5.2506 6.7253 -0.9844 11 7 3.7763 5.9190 -2.4366 12 6 3.7614 7.1773 -3.1867 13 1 3.8754 8.0132 -2.4965 14 6 4.9145 7.1854 -4.1923 15 6 4.8993 8.4997 -4.9753 16 6 3.5705 8.6332 -5.7219 17 6 2.4174 8.6253 -4.7163 18 1 2.5317 9.4609 -4.0258 19 7 1.1452 8.7537 -5.4312 20 6 0.6705 9.9935 -5.7667 21 1 1.2338 10.8768 -5.5040 22 6 -0.5353 10.1153 -6.4436 23 7 -1.2220 9.0390 -6.7634 24 14 -1.1825 11.8066 -6.9020 25 1 -0.2301 12.8449 -6.4328 26 1 -1.3281 11.8979 -8.3770 27 1 -2.5042 12.0215 -6.2599 28 6 2.4326 7.3109 -3.9334 29 7 3.8773 3.4399 -0.8645 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8901 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 5.4226 2.4147 1.7426 38 1 6.0289 4.9032 1.0706 39 1 3.2237 5.1759 -2.7251 40 1 4.8004 6.3495 -4.8826 41 1 5.8611 7.0906 -3.6603 42 1 5.7211 8.5056 -5.6913 43 1 5.0136 9.3353 -4.2847 44 1 3.4563 7.7977 -6.4124 45 1 3.5596 9.5699 -6.2794 46 1 0.6390 7.9605 -5.6669 47 1 -2.0647 9.1241 -7.2361 48 1 1.6109 7.3049 -3.2173 49 1 2.3183 6.4753 -4.6239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981220756.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:45 Heat of formation + Delta-G solvation = -24.956921 kcal Electronic energy + Delta-G solvation = -28618.431084 eV Core-core repulsion = 24581.302320 eV Total energy + Delta-G solvation = -4037.128764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.67693 -40.92796 -39.23057 -38.97012 -36.25075 -35.06350 -34.73812 -32.94315 -31.84194 -31.00692 -30.20372 -29.33878 -27.35486 -25.77834 -25.45761 -23.66390 -23.13382 -22.47059 -22.14007 -21.22252 -20.60455 -19.27871 -18.78516 -17.96434 -17.44771 -17.37911 -17.03485 -16.73287 -16.39852 -16.03200 -15.96465 -15.47093 -15.40057 -15.10127 -15.00165 -14.90602 -14.66536 -14.38034 -14.15689 -13.94161 -13.58770 -13.40212 -13.01927 -12.91159 -12.84219 -12.63718 -12.34869 -12.26710 -12.15506 -12.02735 -11.97771 -11.90303 -11.65966 -11.60055 -11.39789 -11.04514 -10.87753 -10.79171 -10.35236 -10.13391 -9.97729 -8.99922 -7.93684 -5.21588 0.49131 1.17428 1.32781 1.47448 1.47582 1.57781 2.10842 2.36192 2.56859 2.77259 3.37429 3.39901 3.61736 3.75190 3.82346 3.85551 3.97825 4.03843 4.11366 4.20909 4.28280 4.30718 4.43234 4.44018 4.47770 4.52020 4.57006 4.61632 4.65890 4.66769 4.74799 4.75919 4.78386 4.83459 5.02264 5.10813 5.16716 5.22016 5.32421 5.35348 5.45321 5.50625 5.53573 5.65806 5.81207 5.99731 6.29038 6.43300 6.87221 7.15542 7.35141 8.10517 8.34571 9.30048 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.002365 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.044337 B =11834.602713 C =13837.266901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.277 5.277 6 C 0.009 3.991 7 C -0.201 4.201 8 C -0.040 4.040 9 C 0.601 3.399 10 O -0.569 6.569 11 N -0.703 5.703 12 C 0.158 3.842 13 H 0.074 0.926 14 C -0.116 4.116 15 C -0.105 4.105 16 C -0.127 4.127 17 C 0.178 3.822 18 H 0.039 0.961 19 N -0.736 5.736 20 C -0.234 4.234 21 H 0.074 0.926 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.293 1.293 27 H -0.294 1.294 28 C -0.114 4.114 29 N -0.277 5.277 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.109 0.891 36 H 0.149 0.851 37 H 0.231 0.769 38 H 0.166 0.834 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.059 0.941 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.606 -21.424 17.736 30.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.027 4.027 4 C 0.004 3.996 5 N -0.067 5.067 6 C -0.133 4.133 7 C -0.229 4.229 8 C -0.199 4.199 9 C 0.387 3.613 10 O -0.447 6.447 11 N -0.353 5.353 12 C 0.053 3.947 13 H 0.092 0.908 14 C -0.155 4.155 15 C -0.144 4.144 16 C -0.167 4.167 17 C 0.069 3.931 18 H 0.057 0.943 19 N -0.376 5.376 20 C -0.366 4.366 21 H 0.092 0.908 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.799 3.201 25 H -0.192 1.192 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.153 4.153 29 N -0.114 5.114 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.167 0.833 37 H 0.247 0.753 38 H 0.184 0.816 39 H 0.248 0.752 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.344 -21.290 17.225 30.039 hybrid contribution -0.922 1.018 -0.272 1.400 sum 11.422 -20.272 16.953 28.789 Atomic orbital electron populations 1.22961 0.78839 1.04298 1.00819 1.87739 1.21766 1.26765 1.95670 1.22597 0.92963 0.85470 1.01671 1.21966 0.92186 0.77172 1.08326 1.45640 1.30854 1.11764 1.18425 1.23531 0.95847 0.95661 0.98259 1.22032 1.05053 0.97591 0.98197 1.21873 1.03420 0.93759 1.00850 1.17209 0.79146 0.85355 0.79597 1.90761 1.43779 1.40603 1.69520 1.45897 1.44930 1.16875 1.27582 1.20840 0.95091 0.85992 0.92737 0.90796 1.21817 0.97605 0.98686 0.97370 1.21411 0.97006 0.97012 0.98945 1.22096 0.95003 1.00866 0.98704 1.20302 0.85601 0.95072 0.92109 0.94314 1.42591 1.21903 1.05131 1.67935 1.19631 1.02110 0.86554 1.28331 0.90849 1.25514 0.98413 1.00428 1.02531 1.69818 1.16338 1.28641 1.47255 0.85124 0.77847 0.80047 0.77091 1.19189 1.22071 1.22148 1.21870 0.95905 0.98672 0.98871 1.73446 1.22976 0.98016 1.16922 0.93776 0.87623 0.93081 0.92370 0.92924 0.87272 0.83322 0.75262 0.81610 0.75219 0.91058 0.91847 0.90391 0.92037 0.92900 0.93715 0.79509 0.94112 0.92265 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -5.24 10.70 -148.98 -1.59 -6.83 16 3 C 0.05 0.61 6.04 71.98 0.43 1.04 16 4 C 0.12 1.01 6.77 86.38 0.58 1.59 16 5 N -0.28 -3.97 3.41 -347.96 -1.19 -5.15 16 6 C 0.01 0.11 11.40 83.54 0.95 1.06 16 7 C -0.20 -3.85 10.81 22.41 0.24 -3.61 16 8 C -0.04 -0.99 7.13 42.46 0.30 -0.69 16 9 C 0.60 17.90 7.79 86.75 0.68 18.58 16 10 O -0.57 -20.31 16.59 -3.95 -0.07 -20.38 16 11 N -0.70 -19.24 5.07 -445.54 -2.26 -21.50 16 12 C 0.16 4.71 2.45 44.99 0.11 4.82 16 13 H 0.07 2.46 7.58 -2.39 -0.02 2.44 16 14 C -0.12 -3.18 5.49 30.60 0.17 -3.02 16 15 C -0.11 -2.98 5.92 30.59 0.18 -2.80 16 16 C -0.13 -4.51 5.50 30.60 0.17 -4.34 16 17 C 0.18 7.12 2.77 44.99 0.12 7.25 16 18 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 19 N -0.74 -37.38 5.12 -322.94 -1.65 -39.04 16 20 C -0.23 -13.15 9.93 84.03 0.83 -12.31 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 23 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 24 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 28 C -0.11 -3.80 4.86 30.59 0.15 -3.66 16 29 N -0.28 -5.94 11.36 -48.18 -0.55 -6.49 16 30 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.81 8.08 -2.38 -0.02 0.80 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.15 0.19 8.04 -2.38 -0.02 0.17 16 37 H 0.23 0.29 8.06 -2.91 -0.02 0.27 16 38 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 39 H 0.41 10.09 8.33 -92.71 -0.77 9.32 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 47 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 48 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -74.69 405.57 1.10 -73.59 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.54 Total: 34.92 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 6.64 Total: 1.44 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -5.36 Total: -131.54 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -1.66 Total: -27.21 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -74.69 1.10 -73.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981220756.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.632 kcal (2) G-P(sol) polarization free energy of solvation -74.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds