Wall clock time and date at job start Tue Mar 31 2020 19:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99978 * 2 1 4 4 C 1.53002 * 109.47368 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47499 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88806 * 124.97313 * 5 4 3 7 7 C 1.35368 * 107.22894 * 179.76540 * 6 5 4 8 8 C 1.41501 * 105.50141 * 0.35516 * 7 6 5 9 9 C 1.47714 * 126.51483 * 179.90409 * 8 7 6 10 10 O 1.21568 * 120.00131 * 359.71027 * 9 8 7 11 11 N 1.34778 * 119.99815 * 179.71405 * 9 8 7 12 12 C 1.46499 * 119.99771 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47391 * 34.99730 * 12 11 9 14 14 C 1.53002 * 109.46799 * 274.99826 * 12 11 9 15 15 C 1.53006 * 109.46711 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47445 * 59.99695 * 15 14 12 17 17 C 1.53002 * 109.47092 * 300.00075 * 16 15 14 18 18 H 1.09002 * 109.47067 * 299.99853 * 17 16 15 19 19 N 1.46500 * 109.46766 * 180.02562 * 17 16 15 20 20 C 1.36937 * 120.00410 * 85.00153 * 19 17 16 21 21 H 1.08000 * 119.99361 * 359.97438 * 20 19 17 22 22 C 1.38801 * 120.00292 * 179.97438 * 20 19 17 23 23 N 1.31626 * 120.00297 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00422 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46609 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47207 * 119.99716 * 24 22 20 27 27 H 1.48498 * 109.47533 * 240.00299 * 24 22 20 28 28 C 1.53000 * 109.46840 * 155.00060 * 12 11 9 29 29 N 1.28469 * 124.88083 * 304.97414 * 5 4 3 30 30 H 1.09001 * 109.46628 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47149 * 299.99956 * 1 2 3 32 32 H 1.09001 * 109.47071 * 60.00130 * 1 2 3 33 33 H 1.08994 * 109.47283 * 59.99818 * 3 2 1 34 34 H 1.09007 * 109.47080 * 299.99754 * 3 2 1 35 35 H 1.08994 * 109.47269 * 59.99562 * 4 3 2 36 36 H 1.09007 * 109.46618 * 299.99790 * 4 3 2 37 37 H 1.08004 * 126.38590 * 0.02890 * 6 5 4 38 38 H 1.08000 * 127.24815 * 180.24702 * 7 6 5 39 39 H 0.96998 * 119.99599 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.47075 * 299.99543 * 14 12 11 41 41 H 1.08996 * 109.47407 * 60.00500 * 14 12 11 42 42 H 1.09001 * 109.46726 * 179.97438 * 15 14 12 43 43 H 1.09002 * 109.46589 * 299.99365 * 15 14 12 44 44 H 1.09002 * 109.47045 * 59.99942 * 16 15 14 45 45 H 1.09000 * 109.47140 * 179.97438 * 16 15 14 46 46 H 0.97000 * 119.99491 * 264.99884 * 19 17 16 47 47 H 0.96993 * 120.00252 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.47194 * 299.99493 * 28 12 11 49 49 H 1.08992 * 109.47399 * 59.99666 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0258 2.9698 0.9075 7 6 5.3393 4.2423 0.5687 8 6 4.5728 4.5258 -0.5865 9 6 4.5589 5.7948 -1.3424 10 8 5.2514 6.7259 -0.9800 11 7 3.7783 5.9204 -2.4340 12 6 3.7650 7.1787 -3.1840 13 1 4.7611 7.6209 -3.1696 14 6 2.7685 8.1452 -2.5407 15 6 2.7541 9.4592 -3.3245 16 6 2.3380 9.1857 -4.7711 17 6 3.3344 8.2191 -5.4144 18 1 4.3305 8.6615 -5.4003 19 7 2.9362 7.9577 -6.7998 20 6 3.3234 8.8131 -7.7966 21 1 3.9220 9.6807 -7.5612 22 6 2.9466 8.5652 -9.1092 23 7 2.2175 7.5075 -9.3961 24 14 3.4741 9.7324 -10.4689 25 1 4.2806 10.8361 -9.8885 26 1 4.2898 8.9942 -11.4663 27 1 2.2709 10.2955 -11.1326 28 6 3.3490 6.9055 -4.6309 29 7 3.8780 3.4404 -0.8629 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8901 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 5.4210 2.4139 1.7449 38 1 6.0280 4.9027 1.0746 39 1 3.2261 5.1773 -2.7233 40 1 1.7723 7.7030 -2.5552 41 1 3.0648 8.3399 -1.5100 42 1 2.0439 10.1476 -2.8664 43 1 3.7502 9.9016 -3.3103 44 1 1.3419 8.7433 -4.7852 45 1 2.3272 10.1219 -5.3293 46 1 2.3984 7.1786 -7.0110 47 1 1.9545 7.3340 -10.3134 48 1 4.0589 6.2170 -5.0892 49 1 2.3530 6.4633 -4.6453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981220757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:50 Heat of formation + Delta-G solvation = -0.916897 kcal Electronic energy + Delta-G solvation = -28601.664537 eV Core-core repulsion = 24565.578227 eV Total energy + Delta-G solvation = -4036.086310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.95695 -39.71288 -38.52835 -37.80047 -34.62414 -34.36227 -33.27022 -31.14090 -31.03873 -30.12508 -29.06788 -27.74474 -26.85602 -24.76529 -23.69606 -22.81461 -21.83096 -21.72647 -20.88645 -20.06677 -19.30017 -18.20797 -17.37089 -16.98091 -16.72093 -16.48158 -16.09143 -15.99113 -15.29990 -14.73992 -14.66621 -14.37668 -14.18072 -13.96433 -13.76241 -13.60532 -13.45316 -13.39697 -13.05209 -12.63613 -12.54690 -12.19985 -12.08705 -12.01284 -11.89884 -11.16874 -10.96527 -10.88606 -10.86458 -10.67089 -10.32228 -10.30658 -10.29285 -10.14687 -10.07654 -9.69559 -9.58649 -9.55356 -9.36346 -8.90500 -8.81657 -6.92837 -5.74165 -3.02530 1.36841 1.86287 1.92267 3.14100 3.31385 3.40528 3.45338 3.51369 3.53274 3.97034 4.26709 4.42740 4.47675 4.60526 4.60899 4.80139 4.82966 4.93008 5.04731 5.05493 5.14371 5.17204 5.19247 5.37008 5.41516 5.50985 5.54651 5.66296 5.74369 5.80546 5.93334 6.02732 6.07873 6.12049 6.19641 6.36088 6.36562 6.39309 6.47812 6.57397 6.60413 6.69102 6.78197 7.01326 7.17001 7.44916 7.72897 7.74401 8.26196 8.44689 9.55838 10.13587 10.48387 11.48711 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.002228 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.603401 B =12563.052069 C =13818.238674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.283 5.283 6 C -0.016 4.016 7 C -0.178 4.178 8 C -0.010 4.010 9 C 0.602 3.398 10 O -0.534 6.534 11 N -0.709 5.709 12 C 0.149 3.851 13 H 0.089 0.911 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.183 3.817 18 H 0.049 0.951 19 N -0.725 5.725 20 C -0.234 4.234 21 H 0.071 0.929 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.129 4.129 29 N -0.261 5.261 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.405 0.595 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.069 0.931 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -14.723 25.277 29.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.158 4.158 7 C -0.206 4.206 8 C -0.171 4.171 9 C 0.386 3.614 10 O -0.409 6.409 11 N -0.359 5.359 12 C 0.045 3.955 13 H 0.107 0.893 14 C -0.163 4.163 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.073 3.927 18 H 0.067 0.933 19 N -0.365 5.365 20 C -0.366 4.366 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.168 4.168 29 N -0.097 5.097 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.239 0.761 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.411 -14.645 24.639 28.666 hybrid contribution 0.064 0.384 -0.391 0.552 sum -0.347 -14.261 24.248 28.133 Atomic orbital electron populations 1.22808 0.79633 1.03266 1.00595 1.87770 1.20827 1.26605 1.95642 1.22647 0.92078 0.85701 1.02418 1.21687 0.93138 0.78494 1.06284 1.45308 1.31346 1.11505 1.19085 1.22890 0.97878 0.96689 0.98374 1.21813 1.04383 0.95991 0.98377 1.22080 1.01415 0.94055 0.99508 1.16885 0.79706 0.84746 0.80031 1.90793 1.42571 1.39354 1.68163 1.46026 1.44981 1.17118 1.27811 1.21075 1.00646 0.83120 0.90696 0.89264 1.21888 0.99073 0.96055 0.99240 1.21486 1.01381 0.95977 0.96445 1.22288 1.00424 1.01320 0.93671 1.20093 0.96143 0.91353 0.85114 0.93308 1.42415 1.63203 1.30284 1.00580 1.19296 1.26403 1.03836 0.87017 0.91075 1.24736 1.00873 0.98202 0.97321 1.69672 1.41945 1.28207 1.18458 0.86134 0.77672 0.80107 0.82415 1.20533 1.21933 1.21949 1.22079 1.01806 1.00204 0.92702 1.73499 1.22862 0.97694 1.15620 0.89048 0.93775 0.93393 0.92480 0.91107 0.87757 0.86933 0.79965 0.81853 0.76071 0.92078 0.92099 0.92522 0.92111 0.92688 0.91902 0.78347 0.93639 0.91263 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.77 10.70 -35.23 -0.38 -3.15 16 3 C 0.05 0.32 6.04 37.16 0.22 0.54 16 4 C 0.12 0.69 6.77 -4.04 -0.03 0.66 16 5 N -0.28 -2.37 3.41 -61.33 -0.21 -2.58 16 6 C -0.02 -0.12 11.40 -17.17 -0.20 -0.32 16 7 C -0.18 -1.83 10.81 -39.36 -0.43 -2.25 16 8 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 9 C 0.60 8.89 7.79 -12.39 -0.10 8.80 16 10 O -0.53 -9.37 16.59 5.31 0.09 -9.28 16 11 N -0.71 -9.70 5.07 -54.79 -0.28 -9.98 16 12 C 0.15 2.22 2.45 -67.93 -0.17 2.05 16 13 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 14 C -0.12 -1.76 5.50 -26.73 -0.15 -1.91 16 15 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 16 C -0.14 -2.45 5.50 -26.73 -0.15 -2.60 16 17 C 0.18 3.64 2.77 -67.95 -0.19 3.45 16 18 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 19 N -0.72 -18.09 5.12 -53.45 -0.27 -18.37 16 20 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 24 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 C -0.13 -2.14 4.86 -26.75 -0.13 -2.27 16 29 N -0.26 -2.94 11.36 33.42 0.38 -2.56 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.11 0.33 8.04 -51.93 -0.42 -0.09 16 37 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.40 4.98 8.33 -40.82 -0.34 4.64 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -34.07 405.57 -8.23 -42.31 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -8.20 Total: 9.83 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.18 Total: -2.32 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.34 Total: -61.05 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.29 Total: -12.43 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.07 -8.23 -42.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981220757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.389 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds