Wall clock time and date at job start Tue Mar 31 2020 19:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99978 * 2 1 4 4 C 1.53002 * 109.47368 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47499 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88806 * 124.97313 * 5 4 3 7 7 C 1.35368 * 107.22894 * 179.76540 * 6 5 4 8 8 C 1.41501 * 105.50141 * 0.35516 * 7 6 5 9 9 C 1.47714 * 126.51483 * 179.90409 * 8 7 6 10 10 O 1.21568 * 120.00131 * 359.71027 * 9 8 7 11 11 N 1.34778 * 119.99815 * 179.71405 * 9 8 7 12 12 C 1.46499 * 119.99771 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47391 * 34.99730 * 12 11 9 14 14 C 1.53002 * 109.46799 * 274.99826 * 12 11 9 15 15 C 1.53006 * 109.46711 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47445 * 59.99695 * 15 14 12 17 17 C 1.53002 * 109.47092 * 300.00075 * 16 15 14 18 18 H 1.09002 * 109.47067 * 299.99853 * 17 16 15 19 19 N 1.46500 * 109.46766 * 180.02562 * 17 16 15 20 20 C 1.36937 * 120.00410 * 85.00153 * 19 17 16 21 21 H 1.08000 * 119.99361 * 359.97438 * 20 19 17 22 22 C 1.38801 * 120.00292 * 179.97438 * 20 19 17 23 23 N 1.31626 * 120.00297 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00422 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46609 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47207 * 119.99716 * 24 22 20 27 27 H 1.48498 * 109.47533 * 240.00299 * 24 22 20 28 28 C 1.53000 * 109.46840 * 155.00060 * 12 11 9 29 29 N 1.28469 * 124.88083 * 304.97414 * 5 4 3 30 30 H 1.09001 * 109.46628 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47149 * 299.99956 * 1 2 3 32 32 H 1.09001 * 109.47071 * 60.00130 * 1 2 3 33 33 H 1.08994 * 109.47283 * 59.99818 * 3 2 1 34 34 H 1.09007 * 109.47080 * 299.99754 * 3 2 1 35 35 H 1.08994 * 109.47269 * 59.99562 * 4 3 2 36 36 H 1.09007 * 109.46618 * 299.99790 * 4 3 2 37 37 H 1.08004 * 126.38590 * 0.02890 * 6 5 4 38 38 H 1.08000 * 127.24815 * 180.24702 * 7 6 5 39 39 H 0.96998 * 119.99599 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.47075 * 299.99543 * 14 12 11 41 41 H 1.08996 * 109.47407 * 60.00500 * 14 12 11 42 42 H 1.09001 * 109.46726 * 179.97438 * 15 14 12 43 43 H 1.09002 * 109.46589 * 299.99365 * 15 14 12 44 44 H 1.09002 * 109.47045 * 59.99942 * 16 15 14 45 45 H 1.09000 * 109.47140 * 179.97438 * 16 15 14 46 46 H 0.97000 * 119.99491 * 264.99884 * 19 17 16 47 47 H 0.96993 * 120.00252 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.47194 * 299.99493 * 28 12 11 49 49 H 1.08992 * 109.47399 * 59.99666 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0258 2.9698 0.9075 7 6 5.3393 4.2423 0.5687 8 6 4.5728 4.5258 -0.5865 9 6 4.5589 5.7948 -1.3424 10 8 5.2514 6.7259 -0.9800 11 7 3.7783 5.9204 -2.4340 12 6 3.7650 7.1787 -3.1840 13 1 4.7611 7.6209 -3.1696 14 6 2.7685 8.1452 -2.5407 15 6 2.7541 9.4592 -3.3245 16 6 2.3380 9.1857 -4.7711 17 6 3.3344 8.2191 -5.4144 18 1 4.3305 8.6615 -5.4003 19 7 2.9362 7.9577 -6.7998 20 6 3.3234 8.8131 -7.7966 21 1 3.9220 9.6807 -7.5612 22 6 2.9466 8.5652 -9.1092 23 7 2.2175 7.5075 -9.3961 24 14 3.4741 9.7324 -10.4689 25 1 4.2806 10.8361 -9.8885 26 1 4.2898 8.9942 -11.4663 27 1 2.2709 10.2955 -11.1326 28 6 3.3490 6.9055 -4.6309 29 7 3.8780 3.4404 -0.8629 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8901 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 5.4210 2.4139 1.7449 38 1 6.0280 4.9027 1.0746 39 1 3.2261 5.1773 -2.7233 40 1 1.7723 7.7030 -2.5552 41 1 3.0648 8.3399 -1.5100 42 1 2.0439 10.1476 -2.8664 43 1 3.7502 9.9016 -3.3103 44 1 1.3419 8.7433 -4.7852 45 1 2.3272 10.1219 -5.3293 46 1 2.3984 7.1786 -7.0110 47 1 1.9545 7.3340 -10.3134 48 1 4.0589 6.2170 -5.0892 49 1 2.3530 6.4633 -4.6453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981220757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:49 Heat of formation + Delta-G solvation = -24.932256 kcal Electronic energy + Delta-G solvation = -28602.705921 eV Core-core repulsion = 24565.578227 eV Total energy + Delta-G solvation = -4037.127694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.67783 -40.92864 -39.23132 -38.96666 -36.25047 -35.06284 -34.73732 -32.94326 -31.84232 -31.00581 -30.20155 -29.33872 -27.34913 -25.77814 -25.45606 -23.66259 -23.13419 -22.47123 -22.13908 -21.22337 -20.60354 -19.27870 -18.78372 -17.96216 -17.46706 -17.36526 -17.03279 -16.68290 -16.44324 -16.12877 -15.78290 -15.56185 -15.39189 -15.12867 -15.01801 -14.79457 -14.73579 -14.32792 -14.20654 -13.92700 -13.58952 -13.39955 -13.01831 -12.91146 -12.84270 -12.63058 -12.34130 -12.26703 -12.15504 -12.02642 -11.97783 -11.90296 -11.65974 -11.60035 -11.39804 -11.04549 -10.87714 -10.78249 -10.35266 -10.13413 -9.97709 -8.99852 -7.93598 -5.21609 0.49204 1.17746 1.32345 1.47458 1.47671 1.57832 2.10776 2.36299 2.56865 2.78179 3.37527 3.39938 3.61744 3.75382 3.82553 3.85596 3.97783 4.03786 4.11507 4.21018 4.28345 4.30672 4.43344 4.44547 4.48458 4.52031 4.57051 4.62034 4.66031 4.66843 4.74802 4.76022 4.78349 4.84099 5.02273 5.10759 5.16691 5.21968 5.32417 5.35365 5.45348 5.50633 5.53638 5.65838 5.81281 6.00936 6.29119 6.43319 6.87226 7.15566 7.35169 8.10576 8.34552 9.30124 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.002228 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.603401 B =12563.052069 C =13818.238674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.277 5.277 6 C 0.009 3.991 7 C -0.201 4.201 8 C -0.040 4.040 9 C 0.601 3.399 10 O -0.569 6.569 11 N -0.703 5.703 12 C 0.158 3.842 13 H 0.074 0.926 14 C -0.116 4.116 15 C -0.105 4.105 16 C -0.126 4.126 17 C 0.178 3.822 18 H 0.038 0.962 19 N -0.736 5.736 20 C -0.234 4.234 21 H 0.074 0.926 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.294 1.294 27 H -0.293 1.293 28 C -0.114 4.114 29 N -0.277 5.277 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.231 0.769 38 H 0.166 0.834 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.058 0.942 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 -15.729 27.483 31.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.067 5.067 6 C -0.133 4.133 7 C -0.229 4.229 8 C -0.199 4.199 9 C 0.387 3.613 10 O -0.447 6.447 11 N -0.353 5.353 12 C 0.053 3.947 13 H 0.092 0.908 14 C -0.154 4.154 15 C -0.144 4.144 16 C -0.166 4.166 17 C 0.069 3.931 18 H 0.057 0.943 19 N -0.376 5.376 20 C -0.366 4.366 21 H 0.092 0.908 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.799 3.201 25 H -0.192 1.192 26 H -0.222 1.222 27 H -0.221 1.221 28 C -0.153 4.153 29 N -0.114 5.114 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.125 0.875 36 H 0.167 0.833 37 H 0.247 0.753 38 H 0.184 0.816 39 H 0.248 0.752 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.271 -15.648 26.879 31.104 hybrid contribution 0.012 0.592 -0.983 1.147 sum -0.260 -15.056 25.896 29.956 Atomic orbital electron populations 1.22963 0.78784 1.04277 1.00879 1.87745 1.21850 1.26829 1.95676 1.22585 0.92760 0.85459 1.01755 1.21971 0.92418 0.77175 1.08220 1.45636 1.30924 1.11739 1.18371 1.23529 0.95883 0.95636 0.98256 1.22032 1.05017 0.97619 0.98204 1.21875 1.03505 0.93756 1.00768 1.17209 0.78896 0.85317 0.79882 1.90759 1.43953 1.40802 1.69141 1.45902 1.45000 1.16835 1.27556 1.20842 1.00071 0.83939 0.89810 0.90817 1.21815 0.99222 0.95408 0.98991 1.21413 1.01937 0.96783 0.94237 1.22094 0.99584 0.99577 0.95392 1.20295 0.95959 0.93437 0.83402 0.94345 1.42593 1.63131 1.29593 1.02246 1.19630 1.25298 1.03843 0.87839 0.90834 1.25517 1.01767 1.00025 0.99614 1.69817 1.43666 1.30056 1.18537 0.85122 0.77131 0.78423 0.79419 1.19174 1.22156 1.22065 1.21864 1.02019 0.98167 0.93280 1.73444 1.23176 0.97957 1.16783 0.87755 0.92921 0.93707 0.92124 0.92864 0.87532 0.83338 0.75271 0.81608 0.75217 0.91040 0.91830 0.90373 0.92049 0.92891 0.93719 0.79519 0.94108 0.92303 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.03 10.70 -148.98 -1.59 -6.63 16 3 C 0.05 0.58 6.04 71.98 0.44 1.02 16 4 C 0.12 1.01 6.77 86.38 0.58 1.59 16 5 N -0.28 -3.98 3.41 -347.95 -1.19 -5.16 16 6 C 0.01 0.11 11.40 83.54 0.95 1.06 16 7 C -0.20 -3.85 10.81 22.41 0.24 -3.61 16 8 C -0.04 -0.99 7.13 42.46 0.30 -0.69 16 9 C 0.60 17.90 7.79 86.75 0.68 18.57 16 10 O -0.57 -20.31 16.59 -3.93 -0.07 -20.37 16 11 N -0.70 -19.24 5.07 -445.53 -2.26 -21.50 16 12 C 0.16 4.70 2.45 44.99 0.11 4.81 16 13 H 0.07 2.46 7.58 -2.39 -0.02 2.44 16 14 C -0.12 -3.15 5.50 30.60 0.17 -2.98 16 15 C -0.11 -2.97 5.92 30.60 0.18 -2.79 16 16 C -0.13 -4.49 5.50 30.59 0.17 -4.32 16 17 C 0.18 7.13 2.77 44.98 0.12 7.25 16 18 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 19 N -0.74 -37.46 5.12 -323.01 -1.65 -39.11 16 20 C -0.23 -13.16 9.93 84.03 0.83 -12.33 16 21 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 22 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 23 N -0.97 -59.82 13.06 21.65 0.28 -59.53 16 24 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 28 C -0.11 -3.82 4.86 30.58 0.15 -3.67 16 29 N -0.28 -5.94 11.36 -48.17 -0.55 -6.49 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.77 8.08 -2.38 -0.02 0.76 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.15 0.20 8.04 -2.38 -0.02 0.18 16 37 H 0.23 0.30 8.06 -2.91 -0.02 0.27 16 38 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.41 10.09 8.33 -92.71 -0.77 9.32 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.37 20.24 7.80 -92.71 -0.72 19.51 16 47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -74.94 405.57 1.10 -73.84 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: -0.54 Total: 34.66 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 6.64 Total: 1.39 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -5.36 Total: -131.79 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.66 Total: -27.00 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -74.94 1.10 -73.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981220757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.905 kcal (2) G-P(sol) polarization free energy of solvation -74.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds