Wall clock time and date at job start Tue Mar 31 2020 19:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99853 * 2 1 4 4 C 1.52995 * 109.46871 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46886 * 179.97438 * 4 3 2 6 6 C 1.35032 * 124.88386 * 125.02222 * 5 4 3 7 7 C 1.35370 * 107.22959 * 179.76054 * 6 5 4 8 8 C 1.41507 * 105.49963 * 0.36017 * 7 6 5 9 9 C 1.47706 * 126.51552 * 179.90098 * 8 7 6 10 10 O 1.21573 * 120.00230 * 359.71140 * 9 8 7 11 11 N 1.34774 * 119.99902 * 179.71085 * 9 8 7 12 12 C 1.46506 * 120.00023 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47068 * 324.99489 * 12 11 9 14 14 C 1.52997 * 109.47277 * 84.99860 * 12 11 9 15 15 C 1.53002 * 109.47092 * 60.00025 * 14 12 11 16 16 C 1.53001 * 109.46963 * 60.00194 * 15 14 12 17 17 C 1.53000 * 109.46886 * 299.99499 * 16 15 14 18 18 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 19 19 N 1.46499 * 109.46840 * 180.02562 * 17 16 15 20 20 C 1.36940 * 119.99991 * 85.00591 * 19 17 16 21 21 H 1.07998 * 119.99825 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00230 * 180.02562 * 20 19 17 23 23 N 1.31613 * 119.99954 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47068 * 119.99455 * 24 22 20 27 27 H 1.48501 * 109.46760 * 239.99446 * 24 22 20 28 28 C 1.53002 * 109.47233 * 60.00670 * 17 16 15 29 29 N 1.28465 * 124.88477 * 305.02307 * 5 4 3 30 30 H 1.09004 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46901 * 300.00163 * 1 2 3 32 32 H 1.09000 * 109.47512 * 59.99963 * 1 2 3 33 33 H 1.08994 * 109.47209 * 60.00012 * 3 2 1 34 34 H 1.09002 * 109.46601 * 300.00143 * 3 2 1 35 35 H 1.08994 * 109.47526 * 59.99800 * 4 3 2 36 36 H 1.09000 * 109.46783 * 299.99301 * 4 3 2 37 37 H 1.07996 * 126.39035 * 359.96527 * 6 5 4 38 38 H 1.07994 * 127.25030 * 180.24075 * 7 6 5 39 39 H 0.97001 * 119.99990 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.47045 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.47140 * 299.99799 * 14 12 11 42 42 H 1.09000 * 109.46497 * 180.02562 * 15 14 12 43 43 H 1.09002 * 109.47067 * 299.99853 * 15 14 12 44 44 H 1.09001 * 109.46652 * 179.97438 * 16 15 14 45 45 H 1.08992 * 109.47514 * 59.99933 * 16 15 14 46 46 H 0.97002 * 120.00410 * 264.99761 * 19 17 16 47 47 H 0.97001 * 120.00026 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.47075 * 59.99068 * 28 17 16 49 49 H 1.08996 * 109.47407 * 180.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 -0.0013 6 6 5.0265 2.9702 0.9053 7 6 5.3398 4.2426 0.5656 8 6 4.5722 4.5256 -0.5891 9 6 4.5577 5.7941 -1.3457 10 8 5.2505 6.7254 -0.9843 11 7 3.7762 5.9191 -2.4366 12 6 3.7622 7.1771 -3.1874 13 1 3.8768 8.0132 -2.4975 14 6 4.9152 7.1837 -4.1930 15 6 4.7542 6.0101 -5.1613 16 6 3.4254 6.1437 -5.9080 17 6 2.2724 6.1369 -4.9023 18 1 2.2829 5.2009 -4.3438 19 7 1.0001 6.2641 -5.6173 20 6 0.3875 5.1510 -6.1282 21 1 0.8425 4.1794 -6.0043 22 6 -0.8178 5.2716 -6.8061 23 7 -1.3720 6.4557 -6.9576 24 14 -1.6531 3.7532 -7.5035 25 1 -0.8319 2.5536 -7.2011 26 1 -2.9968 3.6015 -6.8896 27 1 -1.7945 3.8979 -8.9747 28 6 2.4333 7.3105 -3.9340 29 7 3.8772 3.4400 -0.8644 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6885 1.8463 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8573 0.6437 0.8892 37 1 5.4217 2.4152 1.7432 38 1 6.0288 4.9033 1.0706 39 1 3.2237 5.1759 -2.7251 40 1 4.9044 8.1195 -4.7519 41 1 5.8618 7.0887 -3.6611 42 1 5.5759 6.0147 -5.8775 43 1 4.7647 5.0742 -4.6028 44 1 3.3110 5.3078 -6.5982 45 1 3.4149 7.0795 -6.4665 46 1 0.5915 7.1368 -5.7289 47 1 -2.2145 6.5399 -7.4310 48 1 2.4229 8.2465 -4.4926 49 1 1.6122 7.3054 -3.2173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981220758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:55 Heat of formation + Delta-G solvation = 1.785406 kcal Electronic energy + Delta-G solvation = -29544.644949 eV Core-core repulsion = 25508.675819 eV Total energy + Delta-G solvation = -4035.969129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.85123 -39.83521 -38.35475 -37.75591 -34.43012 -34.23700 -32.97630 -31.14702 -30.95515 -30.07075 -29.17698 -27.82835 -26.70685 -24.66885 -23.70177 -22.70126 -21.92143 -21.62017 -20.98627 -20.20453 -18.68810 -18.17223 -17.28100 -17.03831 -16.64038 -16.34215 -15.95830 -15.38518 -15.33726 -15.10469 -14.57203 -14.36468 -14.22683 -13.97444 -13.63979 -13.47644 -13.42186 -13.24534 -13.01837 -12.46108 -12.34839 -12.04108 -12.00886 -11.80751 -11.71961 -11.67717 -11.02356 -10.98810 -10.89760 -10.71715 -10.34246 -10.15298 -10.12958 -10.12043 -9.98974 -9.71246 -9.49432 -9.46291 -9.26697 -8.90343 -8.76377 -6.95461 -5.77046 -3.05437 1.48206 1.96279 2.03767 3.27679 3.41468 3.45459 3.47312 3.49458 3.50238 4.10107 4.42583 4.55621 4.57146 4.57911 4.74558 4.97816 4.99375 5.07884 5.15726 5.16323 5.20558 5.24300 5.33531 5.38371 5.48439 5.52538 5.58996 5.64144 5.74026 5.82252 5.93191 6.02684 6.11864 6.15779 6.21424 6.32193 6.35397 6.48479 6.56197 6.61642 6.64342 6.73350 6.76657 6.99184 7.12890 7.56102 7.70218 7.84435 8.34858 8.41647 9.52877 10.10970 10.45705 11.45759 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007331 B = 0.003947 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.482466 B = 7093.175103 C =10309.077395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.048 3.952 4 C 0.125 3.875 5 N -0.282 5.282 6 C -0.018 4.018 7 C -0.179 4.179 8 C -0.012 4.012 9 C 0.603 3.397 10 O -0.541 6.541 11 N -0.703 5.703 12 C 0.151 3.849 13 H 0.086 0.914 14 C -0.127 4.127 15 C -0.116 4.116 16 C -0.136 4.136 17 C 0.180 3.820 18 H 0.042 0.958 19 N -0.725 5.725 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.133 4.133 29 N -0.256 5.256 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.182 0.818 38 H 0.163 0.837 39 H 0.409 0.591 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.077 0.923 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.785 -9.055 17.151 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.030 4.030 4 C 0.004 3.996 5 N -0.071 5.071 6 C -0.160 4.160 7 C -0.207 4.207 8 C -0.172 4.172 9 C 0.387 3.613 10 O -0.416 6.416 11 N -0.355 5.355 12 C 0.046 3.954 13 H 0.104 0.896 14 C -0.166 4.166 15 C -0.154 4.154 16 C -0.176 4.176 17 C 0.070 3.930 18 H 0.060 0.940 19 N -0.365 5.365 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.172 4.172 29 N -0.092 5.092 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.200 0.800 38 H 0.180 0.820 39 H 0.246 0.754 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.458 -9.288 16.585 22.195 hybrid contribution -0.571 -0.480 -0.065 0.748 sum 10.887 -9.767 16.520 22.065 Atomic orbital electron populations 1.22817 0.79558 1.03200 1.00788 1.87750 1.20895 1.26580 1.95675 1.22656 0.91933 0.85773 1.02615 1.21690 0.93288 0.78415 1.06172 1.45332 1.31191 1.11560 1.19062 1.22877 0.97944 0.96715 0.98425 1.21783 1.04494 0.95966 0.98432 1.22065 1.01450 0.94137 0.99588 1.16886 0.79830 0.84788 0.79804 1.90767 1.42653 1.39261 1.68952 1.46085 1.44725 1.17402 1.27300 1.21005 0.95761 0.85960 0.92648 0.89622 1.21901 0.98049 0.99520 0.97100 1.21509 0.98180 0.97953 0.97774 1.22269 0.94114 1.01877 0.99347 1.20156 0.86783 0.95056 0.91022 0.93977 1.42429 1.20737 1.07839 1.65489 1.19274 1.01882 0.87763 1.27779 0.91209 1.24718 0.98116 0.96520 1.01583 1.69666 1.19733 1.21327 1.47388 0.86167 0.79359 0.82354 0.78635 1.20598 1.21946 1.21895 1.22126 0.95252 1.00913 0.98895 1.73563 1.22446 0.97687 1.15514 0.89119 0.93802 0.93143 0.92499 0.90859 0.87774 0.86994 0.80042 0.81952 0.75390 0.91064 0.91998 0.92873 0.92588 0.92145 0.92557 0.78268 0.93604 0.90432 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.65 10.70 -35.23 -0.38 -4.02 16 3 C 0.05 0.42 6.04 37.16 0.22 0.64 16 4 C 0.12 0.91 6.77 -4.04 -0.03 0.88 16 5 N -0.28 -2.79 3.41 -61.34 -0.21 -2.99 16 6 C -0.02 -0.15 11.40 -17.17 -0.20 -0.35 16 7 C -0.18 -1.99 10.81 -39.36 -0.43 -2.42 16 8 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 9 C 0.60 9.35 7.79 -12.39 -0.10 9.25 16 10 O -0.54 -9.55 16.59 5.30 0.09 -9.46 16 11 N -0.70 -10.44 4.23 -54.79 -0.23 -10.67 16 12 C 0.15 2.22 2.78 -67.93 -0.19 2.04 16 13 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 14 C -0.13 -1.79 5.60 -26.73 -0.15 -1.94 16 15 C -0.12 -1.72 5.77 -26.73 -0.15 -1.87 16 16 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 17 C 0.18 3.46 2.60 -67.93 -0.18 3.28 16 18 H 0.04 0.83 6.44 -51.93 -0.33 0.50 16 19 N -0.72 -17.75 5.12 -53.42 -0.27 -18.02 16 20 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 24 Si 0.90 22.19 29.55 -169.99 -5.02 17.17 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 28 C -0.13 -2.18 5.08 -26.73 -0.14 -2.31 16 29 N -0.26 -3.33 11.36 33.42 0.38 -2.95 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.49 8.04 -51.93 -0.42 0.07 16 37 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.41 6.17 6.59 -40.82 -0.27 5.90 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.85 7.60 -51.93 -0.39 0.45 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -33.27 401.14 -8.09 -41.36 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -8.01 Total: 12.55 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.20 Total: -1.80 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.39 Total: -61.83 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.29 Total: -13.48 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.27 -8.09 -41.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981220758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.142 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds