Wall clock time and date at job start Tue Mar 31 2020 19:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99853 * 2 1 4 4 C 1.52995 * 109.46871 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46886 * 179.97438 * 4 3 2 6 6 C 1.35032 * 124.88386 * 125.02222 * 5 4 3 7 7 C 1.35370 * 107.22959 * 179.76054 * 6 5 4 8 8 C 1.41507 * 105.49963 * 0.36017 * 7 6 5 9 9 C 1.47706 * 126.51552 * 179.90098 * 8 7 6 10 10 O 1.21573 * 120.00230 * 359.71140 * 9 8 7 11 11 N 1.34774 * 119.99902 * 179.71085 * 9 8 7 12 12 C 1.46506 * 120.00023 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47068 * 324.99489 * 12 11 9 14 14 C 1.52997 * 109.47277 * 84.99860 * 12 11 9 15 15 C 1.53002 * 109.47092 * 60.00025 * 14 12 11 16 16 C 1.53001 * 109.46963 * 60.00194 * 15 14 12 17 17 C 1.53000 * 109.46886 * 299.99499 * 16 15 14 18 18 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 19 19 N 1.46499 * 109.46840 * 180.02562 * 17 16 15 20 20 C 1.36940 * 119.99991 * 85.00591 * 19 17 16 21 21 H 1.07998 * 119.99825 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00230 * 180.02562 * 20 19 17 23 23 N 1.31613 * 119.99954 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47068 * 119.99455 * 24 22 20 27 27 H 1.48501 * 109.46760 * 239.99446 * 24 22 20 28 28 C 1.53002 * 109.47233 * 60.00670 * 17 16 15 29 29 N 1.28465 * 124.88477 * 305.02307 * 5 4 3 30 30 H 1.09004 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46901 * 300.00163 * 1 2 3 32 32 H 1.09000 * 109.47512 * 59.99963 * 1 2 3 33 33 H 1.08994 * 109.47209 * 60.00012 * 3 2 1 34 34 H 1.09002 * 109.46601 * 300.00143 * 3 2 1 35 35 H 1.08994 * 109.47526 * 59.99800 * 4 3 2 36 36 H 1.09000 * 109.46783 * 299.99301 * 4 3 2 37 37 H 1.07996 * 126.39035 * 359.96527 * 6 5 4 38 38 H 1.07994 * 127.25030 * 180.24075 * 7 6 5 39 39 H 0.97001 * 119.99990 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.47045 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.47140 * 299.99799 * 14 12 11 42 42 H 1.09000 * 109.46497 * 180.02562 * 15 14 12 43 43 H 1.09002 * 109.47067 * 299.99853 * 15 14 12 44 44 H 1.09001 * 109.46652 * 179.97438 * 16 15 14 45 45 H 1.08992 * 109.47514 * 59.99933 * 16 15 14 46 46 H 0.97002 * 120.00410 * 264.99761 * 19 17 16 47 47 H 0.97001 * 120.00026 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.47075 * 59.99068 * 28 17 16 49 49 H 1.08996 * 109.47407 * 180.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 -0.0013 6 6 5.0265 2.9702 0.9053 7 6 5.3398 4.2426 0.5656 8 6 4.5722 4.5256 -0.5891 9 6 4.5577 5.7941 -1.3457 10 8 5.2505 6.7254 -0.9843 11 7 3.7762 5.9191 -2.4366 12 6 3.7622 7.1771 -3.1874 13 1 3.8768 8.0132 -2.4975 14 6 4.9152 7.1837 -4.1930 15 6 4.7542 6.0101 -5.1613 16 6 3.4254 6.1437 -5.9080 17 6 2.2724 6.1369 -4.9023 18 1 2.2829 5.2009 -4.3438 19 7 1.0001 6.2641 -5.6173 20 6 0.3875 5.1510 -6.1282 21 1 0.8425 4.1794 -6.0043 22 6 -0.8178 5.2716 -6.8061 23 7 -1.3720 6.4557 -6.9576 24 14 -1.6531 3.7532 -7.5035 25 1 -0.8319 2.5536 -7.2011 26 1 -2.9968 3.6015 -6.8896 27 1 -1.7945 3.8979 -8.9747 28 6 2.4333 7.3105 -3.9340 29 7 3.8772 3.4400 -0.8644 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6885 1.8463 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8573 0.6437 0.8892 37 1 5.4217 2.4152 1.7432 38 1 6.0288 4.9033 1.0706 39 1 3.2237 5.1759 -2.7251 40 1 4.9044 8.1195 -4.7519 41 1 5.8618 7.0887 -3.6611 42 1 5.5759 6.0147 -5.8775 43 1 4.7647 5.0742 -4.6028 44 1 3.3110 5.3078 -6.5982 45 1 3.4149 7.0795 -6.4665 46 1 0.5915 7.1368 -5.7289 47 1 -2.2145 6.5399 -7.4310 48 1 2.4229 8.2465 -4.4926 49 1 1.6122 7.3054 -3.2173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981220758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:53 Heat of formation + Delta-G solvation = -21.015544 kcal Electronic energy + Delta-G solvation = -29545.633672 eV Core-core repulsion = 25508.675819 eV Total energy + Delta-G solvation = -4036.957853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.66675 -41.09325 -39.18880 -38.96284 -36.15662 -35.01168 -34.40851 -32.93799 -31.83264 -31.10213 -30.23880 -29.47165 -27.37972 -25.77381 -25.45995 -23.63887 -23.16413 -22.48313 -22.41650 -21.25716 -20.04458 -19.28212 -18.83428 -18.04387 -17.44596 -17.07115 -16.99768 -16.71930 -16.52286 -16.27531 -15.96875 -15.54457 -15.43429 -15.05661 -14.95884 -14.81039 -14.68198 -14.27309 -14.01675 -13.89083 -13.54102 -13.10001 -13.05537 -13.01473 -12.90784 -12.82837 -12.64407 -12.36588 -12.21970 -12.03710 -11.96974 -11.87294 -11.62142 -11.47994 -11.20880 -11.01482 -10.85964 -10.80802 -10.34086 -10.11434 -9.94485 -8.99183 -7.93449 -5.21275 0.51686 1.19121 1.34098 1.45998 1.46753 1.56352 2.19439 2.39015 2.55773 2.76570 3.39427 3.40175 3.63815 3.77311 3.81148 3.87174 3.91983 3.99525 4.13284 4.20678 4.29337 4.31131 4.35216 4.41799 4.46574 4.55294 4.60184 4.65252 4.66378 4.71351 4.74693 4.78202 4.81309 4.82218 4.95346 5.08378 5.17584 5.22238 5.34097 5.36633 5.48223 5.50209 5.54523 5.65193 5.82558 5.98146 6.29059 6.44631 6.88501 7.17366 7.35278 8.11303 8.34827 9.30286 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007331 B = 0.003947 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.482466 B = 7093.175103 C =10309.077395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.278 5.278 6 C 0.009 3.991 7 C -0.199 4.199 8 C -0.041 4.041 9 C 0.602 3.398 10 O -0.568 6.568 11 N -0.702 5.702 12 C 0.156 3.844 13 H 0.088 0.912 14 C -0.121 4.121 15 C -0.105 4.105 16 C -0.126 4.126 17 C 0.178 3.822 18 H 0.037 0.963 19 N -0.736 5.736 20 C -0.234 4.234 21 H 0.072 0.928 22 C -0.074 4.074 23 N -0.969 5.969 24 Si 0.966 3.034 25 H -0.267 1.267 26 H -0.294 1.294 27 H -0.295 1.295 28 C -0.121 4.121 29 N -0.283 5.283 30 H 0.107 0.893 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.232 0.768 38 H 0.169 0.831 39 H 0.407 0.593 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.084 0.916 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.277 -10.917 18.736 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.027 4.027 4 C 0.004 3.996 5 N -0.068 5.068 6 C -0.133 4.133 7 C -0.227 4.227 8 C -0.200 4.200 9 C 0.388 3.612 10 O -0.446 6.446 11 N -0.353 5.353 12 C 0.052 3.948 13 H 0.106 0.894 14 C -0.159 4.159 15 C -0.143 4.143 16 C -0.166 4.166 17 C 0.069 3.931 18 H 0.055 0.945 19 N -0.376 5.376 20 C -0.366 4.366 21 H 0.090 0.910 22 C -0.266 4.266 23 N -0.620 5.620 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.221 1.221 27 H -0.222 1.222 28 C -0.159 4.159 29 N -0.120 5.120 30 H 0.125 0.875 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.170 0.830 37 H 0.248 0.752 38 H 0.187 0.813 39 H 0.244 0.756 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.102 0.898 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.986 -11.175 18.181 24.981 hybrid contribution -1.015 0.033 -0.481 1.124 sum 11.971 -11.142 17.700 24.099 Atomic orbital electron populations 1.22959 0.78917 1.04315 1.00733 1.87730 1.21693 1.26720 1.95658 1.22596 0.93142 0.85480 1.01526 1.21948 0.92032 0.77337 1.08267 1.45631 1.30953 1.11711 1.18504 1.23557 0.95799 0.95750 0.98222 1.22031 1.05030 0.97515 0.98089 1.21972 1.03291 0.93862 1.00914 1.17165 0.79171 0.85310 0.79596 1.90735 1.43780 1.40406 1.69655 1.46078 1.44661 1.17203 1.27368 1.20940 0.94960 0.86206 0.92707 0.89382 1.21859 0.97596 0.99785 0.96661 1.21404 0.96796 0.98215 0.97898 1.22087 0.95068 1.00825 0.98625 1.20337 0.85234 0.96088 0.91410 0.94477 1.42617 1.22402 1.06644 1.65907 1.19603 1.01744 0.88617 1.26594 0.90957 1.25471 0.99140 0.99151 1.02850 1.69813 1.20071 1.23286 1.48840 0.85172 0.78179 0.79649 0.77407 1.19178 1.22095 1.22203 1.21971 0.96020 0.99851 0.98089 1.73511 1.23175 0.98246 1.17026 0.87489 0.92805 0.94286 0.92098 0.93527 0.87605 0.82998 0.75168 0.81300 0.75617 0.89657 0.91753 0.91107 0.92891 0.94183 0.92834 0.79518 0.94134 0.89795 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -6.89 10.70 -148.98 -1.59 -8.48 16 3 C 0.05 0.82 6.04 71.98 0.43 1.26 16 4 C 0.12 1.47 6.77 86.38 0.58 2.06 16 5 N -0.28 -4.88 3.41 -347.97 -1.19 -6.07 16 6 C 0.01 0.12 11.40 83.54 0.95 1.07 16 7 C -0.20 -4.10 10.81 22.41 0.24 -3.86 16 8 C -0.04 -1.12 7.13 42.46 0.30 -0.81 16 9 C 0.60 18.72 7.79 86.75 0.68 19.40 16 10 O -0.57 -20.07 16.59 -3.95 -0.07 -20.13 16 11 N -0.70 -20.93 4.23 -445.52 -1.88 -22.82 16 12 C 0.16 4.54 2.78 44.99 0.13 4.67 16 13 H 0.09 2.58 7.58 -2.39 -0.02 2.56 16 14 C -0.12 -3.23 5.60 30.59 0.17 -3.06 16 15 C -0.10 -2.98 5.77 30.60 0.18 -2.81 16 16 C -0.13 -4.44 5.50 30.59 0.17 -4.27 16 17 C 0.18 6.89 2.60 44.99 0.12 7.00 16 18 H 0.04 1.49 6.44 -2.39 -0.02 1.47 16 19 N -0.74 -36.73 5.12 -322.94 -1.65 -38.39 16 20 C -0.23 -12.89 9.93 84.03 0.83 -12.06 16 21 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 23 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 24 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 28 C -0.12 -3.95 5.08 30.60 0.16 -3.79 16 29 N -0.28 -7.17 11.36 -48.18 -0.55 -7.71 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.15 0.62 8.04 -2.39 -0.02 0.60 16 37 H 0.23 0.67 8.06 -2.91 -0.02 0.65 16 38 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.41 12.51 6.59 -92.71 -0.61 11.90 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.55 7.60 -2.39 -0.02 1.53 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.37 20.00 7.80 -92.71 -0.72 19.27 16 47 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 48 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 49 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -73.16 401.14 1.66 -71.50 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -0.38 Total: 40.22 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 6.66 Total: 2.66 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -4.99 Total: -133.89 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.66 Total: -28.61 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.16 1.66 -71.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981220758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.484 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds