Wall clock time and date at job start Tue Mar 31 2020 19:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46689 * 2 1 4 4 C 1.52994 * 109.47317 * 240.00202 * 2 1 3 5 5 N 1.46498 * 109.46791 * 119.99503 * 2 1 3 6 6 N 1.28777 * 125.45432 * 359.97438 * 5 2 1 7 7 N 1.28991 * 108.72923 * 180.02562 * 6 5 2 8 8 C 1.33318 * 107.35660 * 359.97438 * 7 6 5 9 9 C 1.50695 * 126.55332 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47124 * 90.02528 * 9 8 7 11 11 O 1.21277 * 120.00015 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99973 * 180.02562 * 10 9 8 13 13 C 1.48209 * 119.97528 * 180.02562 * 12 10 9 14 14 C 1.47139 * 110.34987 * 102.45718 * 13 12 10 15 15 C 1.53240 * 111.80799 * 58.23044 * 14 13 12 16 16 N 1.43465 * 108.26455 * 281.67900 * 15 14 13 17 17 C 1.36933 * 118.94259 * 273.78234 * 16 15 14 18 18 H 1.08007 * 120.00304 * 26.80540 * 17 16 15 19 19 C 1.38813 * 120.00480 * 206.80552 * 17 16 15 20 20 N 1.31620 * 119.99690 * 26.37638 * 19 17 16 21 21 Si 1.86800 * 120.00287 * 206.38125 * 19 17 16 22 22 H 1.48494 * 109.47299 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47255 * 59.99504 * 21 19 17 24 24 H 1.48503 * 109.46987 * 299.99898 * 21 19 17 25 25 C 1.48864 * 122.12124 * 93.50139 * 16 15 14 26 26 C 1.43623 * 119.97145 * 359.97438 * 12 10 9 27 27 N 1.28887 * 125.44788 * 180.31144 * 5 2 1 28 28 H 1.08998 * 109.47318 * 299.99808 * 1 2 3 29 29 H 1.09004 * 109.46958 * 60.00509 * 1 2 3 30 30 H 1.09008 * 109.46625 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47309 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47685 * 299.99631 * 3 2 1 33 33 H 1.09005 * 109.47381 * 59.99866 * 3 2 1 34 34 H 1.09008 * 109.47039 * 299.99459 * 4 2 1 35 35 H 1.08990 * 109.47457 * 59.99707 * 4 2 1 36 36 H 1.09000 * 109.47157 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.47187 * 330.02758 * 9 8 7 38 38 H 1.08998 * 109.47096 * 210.02922 * 9 8 7 39 39 H 1.08998 * 109.32643 * 222.73502 * 13 12 10 40 40 H 1.09006 * 109.32275 * 342.36660 * 13 12 10 41 41 H 1.09000 * 109.00713 * 178.90571 * 14 13 12 42 42 H 1.08999 * 109.00392 * 297.77046 * 14 13 12 43 43 H 1.08998 * 109.48949 * 162.04574 * 15 14 13 44 44 H 1.08999 * 109.73719 * 41.45988 * 15 14 13 45 45 H 0.97001 * 120.00073 * 5.77655 * 20 19 17 46 46 H 1.09001 * 109.47471 * 80.87844 * 25 16 15 47 47 H 1.08998 * 109.48464 * 200.90140 * 25 16 15 48 48 H 1.08997 * 108.87674 * 149.91196 * 26 12 10 49 49 H 1.09000 * 108.87785 * 31.46942 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 7 1.2782 -1.2170 2.1092 7 7 2.0399 -1.7371 3.0110 8 6 3.3017 -1.5226 2.6378 9 6 4.5420 -1.9509 3.3788 10 6 4.9550 -3.3241 2.9154 11 8 4.3058 -3.8986 2.0673 12 7 6.0452 -3.9142 3.4443 13 6 6.4512 -5.2645 2.9877 14 6 7.5879 -5.1701 2.0582 15 6 8.7915 -4.4716 2.6999 16 7 8.5494 -3.0575 2.6885 17 6 8.8921 -2.3356 1.5766 18 1 8.9200 -2.8147 0.6090 19 6 9.2037 -0.9878 1.6928 20 7 9.6754 -0.5170 2.8278 21 14 8.9533 0.1576 0.2386 22 1 9.3575 1.5351 0.6181 23 1 7.5212 0.1530 -0.1543 24 1 9.7815 -0.3048 -0.9040 25 6 7.9321 -2.3508 3.8441 26 6 6.8132 -3.2336 4.4490 27 7 3.2573 -0.8630 1.5064 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1391 36 1 3.1301 -0.7208 -1.2494 37 1 4.3357 -1.9754 4.4489 38 1 5.3466 -1.2430 3.1801 39 1 6.7394 -5.8654 3.8502 40 1 5.6123 -5.7411 2.4803 41 1 7.8805 -6.1744 1.7520 42 1 7.2804 -4.6061 1.1776 43 1 9.6907 -4.6962 2.1263 44 1 8.9128 -4.8164 3.7268 45 1 9.8844 -1.1239 3.5551 46 1 8.6926 -2.1584 4.6009 47 1 7.5072 -1.4053 3.5072 48 1 7.2661 -3.9739 5.1085 49 1 6.1457 -2.6027 5.0360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981233604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:48 Heat of formation + Delta-G solvation = 118.677917 kcal Electronic energy + Delta-G solvation = -31113.014228 eV Core-core repulsion = 27114.406689 eV Total energy + Delta-G solvation = -3998.607539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.14356 -39.85234 -37.76059 -37.11373 -34.44434 -33.57446 -33.16871 -32.60949 -30.82490 -29.34480 -27.80108 -27.77986 -27.46324 -25.31549 -24.43977 -23.71603 -22.94235 -21.47582 -20.56669 -19.77643 -18.61837 -17.55552 -17.14089 -17.01945 -16.47330 -16.05974 -15.33349 -14.57299 -14.50351 -14.27525 -14.20980 -14.10342 -13.77400 -13.57772 -13.37771 -13.16342 -12.91279 -12.74791 -12.69717 -12.60175 -12.34202 -12.26824 -12.11060 -11.96358 -11.73181 -11.69002 -11.31512 -11.26097 -11.09689 -10.70713 -10.68548 -10.62022 -10.34254 -10.30087 -10.27913 -10.06108 -10.00128 -9.38630 -9.33951 -8.33078 -8.17632 -6.89714 -6.07100 -3.24315 1.46547 1.95627 2.35222 3.00135 3.43739 3.48906 3.54221 3.70383 3.91483 4.21449 4.28292 4.38429 4.59462 4.70322 4.87580 5.08805 5.10722 5.16092 5.22354 5.31182 5.33913 5.36050 5.39579 5.40790 5.48701 5.53483 5.61003 5.66528 5.67906 5.84323 5.85514 5.88417 5.91760 5.94233 5.99080 6.09429 6.16249 6.35302 6.41075 6.45041 6.65362 6.75819 6.89932 6.94146 7.16531 7.82474 8.05630 8.54695 8.57302 8.61054 9.14695 9.83502 10.22677 11.19380 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011074 B = 0.004395 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.948780 B = 6368.800683 C = 7852.253255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.180 3.820 3 C -0.159 4.159 4 C -0.160 4.160 5 N -0.132 5.132 6 N -0.070 5.070 7 N -0.281 5.281 8 C 0.192 3.808 9 C -0.046 4.046 10 C 0.532 3.468 11 O -0.547 6.547 12 N -0.583 5.583 13 C 0.132 3.868 14 C -0.169 4.169 15 C 0.165 3.835 16 N -0.593 5.593 17 C -0.351 4.351 18 H 0.053 0.947 19 C -0.017 4.017 20 N -0.914 5.914 21 Si 1.051 2.949 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.136 3.864 26 C 0.084 3.916 27 N -0.286 5.286 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.031 0.969 45 H 0.268 0.732 46 H 0.037 0.963 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 0.134 -1.173 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.099 3.901 3 C -0.218 4.218 4 C -0.218 4.218 5 N -0.046 5.046 6 N -0.062 5.062 7 N -0.152 5.152 8 C -0.091 4.091 9 C -0.089 4.089 10 C 0.319 3.681 11 O -0.425 6.425 12 N -0.314 5.314 13 C 0.010 3.990 14 C -0.210 4.210 15 C 0.037 3.963 16 N -0.316 5.316 17 C -0.480 4.480 18 H 0.070 0.930 19 C -0.219 4.219 20 N -0.555 5.555 21 Si 0.881 3.119 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.221 1.221 25 C 0.010 3.990 26 C -0.042 4.042 27 N -0.136 5.136 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.161 1.511 -2.246 15.401 hybrid contribution 0.630 -1.682 0.469 1.856 sum -14.531 -0.171 -1.777 14.640 Atomic orbital electron populations 1.22068 0.90330 1.04460 1.03998 1.21328 0.96155 0.92752 0.79899 1.22239 1.03740 0.92055 1.03740 1.22236 1.03787 1.00978 0.94833 1.50398 1.01264 1.35000 1.17952 1.78799 1.22122 1.09576 0.95698 1.75744 1.00836 1.18368 1.20296 1.24638 0.94628 0.98150 0.91675 1.19954 0.92131 0.96756 1.00020 1.19926 0.80360 0.86416 0.81418 1.90656 1.54478 1.65238 1.32123 1.47267 1.25762 1.17827 1.40582 1.20555 0.98071 0.82392 0.97957 1.21758 0.98236 1.00319 1.00728 1.20169 0.94301 0.85005 0.96854 1.43655 1.69227 1.02616 1.16116 1.19898 1.46136 0.95205 0.86773 0.92963 1.25666 0.96743 0.96766 1.02739 1.70826 1.39367 1.38994 1.06277 0.83726 0.76468 0.76554 0.75136 1.21120 1.21821 1.22051 1.22124 0.91926 0.94875 0.90084 1.22032 0.95038 0.97046 0.90040 1.74684 1.02725 1.20027 1.16162 0.90727 0.89442 0.90703 0.90106 0.89314 0.91491 0.91413 0.89370 0.90117 0.86164 0.85427 0.91944 0.90428 0.92556 0.91237 0.93523 0.95022 0.92085 0.94528 0.91278 0.91399 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.91 37.16 0.29 -0.92 16 2 C 0.18 1.95 1.30 -131.82 -0.17 1.78 16 3 C -0.16 -1.47 8.66 37.16 0.32 -1.15 16 4 C -0.16 -1.64 8.67 37.15 0.32 -1.32 16 5 N -0.13 -2.05 3.73 0.48 0.00 -2.05 16 6 N -0.07 -1.16 12.24 60.35 0.74 -0.43 16 7 N -0.28 -5.16 12.50 32.44 0.41 -4.75 16 8 C 0.19 3.53 6.86 -156.63 -1.07 2.46 16 9 C -0.05 -0.77 4.88 -29.04 -0.14 -0.91 16 10 C 0.53 10.28 7.66 -10.99 -0.08 10.20 16 11 O -0.55 -12.36 15.47 5.56 0.09 -12.27 16 12 N -0.58 -10.31 2.46 -176.69 -0.43 -10.75 16 13 C 0.13 2.20 5.69 -5.92 -0.03 2.17 16 14 C -0.17 -3.09 5.63 -29.42 -0.17 -3.25 16 15 C 0.16 3.29 5.59 -5.52 -0.03 3.26 16 16 N -0.59 -13.85 2.40 -172.37 -0.41 -14.26 16 17 C -0.35 -9.48 9.12 -15.06 -0.14 -9.62 16 18 H 0.05 1.48 7.96 -52.48 -0.42 1.06 16 19 C -0.02 -0.46 4.60 -17.43 -0.08 -0.54 16 20 N -0.91 -26.07 12.63 55.49 0.70 -25.37 16 21 Si 1.05 25.14 29.99 -169.99 -5.10 20.04 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.14 2.83 5.06 -1.77 -0.01 2.82 16 26 C 0.08 1.35 5.05 -4.61 -0.02 1.33 16 27 N -0.29 -5.23 11.83 32.46 0.38 -4.85 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.12 1.60 7.37 -51.93 -0.38 1.22 16 38 H 0.13 2.20 7.31 -51.93 -0.38 1.82 16 39 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 40 H 0.08 1.35 7.12 -51.93 -0.37 0.98 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.53 7.91 -51.93 -0.41 1.12 16 43 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 44 H 0.03 0.57 7.58 -51.93 -0.39 0.17 16 45 H 0.27 7.60 6.37 -40.82 -0.26 7.34 16 46 H 0.04 0.79 7.11 -51.93 -0.37 0.42 16 47 H 0.07 1.60 6.20 -51.93 -0.32 1.28 16 48 H 0.07 0.97 7.73 -51.93 -0.40 0.57 16 49 H 0.07 0.94 6.38 -51.93 -0.33 0.61 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -34.81 387.77 -6.69 -41.51 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.90 Total: 1.05 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.01 Total: 6.29 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 1.38 Total: -62.46 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.04 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.81 -6.69 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981233604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.183 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds