Wall clock time and date at job start Tue Mar 31 2020 19:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46689 * 2 1 4 4 C 1.52994 * 109.47317 * 240.00202 * 2 1 3 5 5 N 1.46498 * 109.46791 * 119.99503 * 2 1 3 6 6 N 1.28777 * 125.45432 * 359.97438 * 5 2 1 7 7 N 1.28991 * 108.72923 * 180.02562 * 6 5 2 8 8 C 1.33318 * 107.35660 * 359.97438 * 7 6 5 9 9 C 1.50695 * 126.55332 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47124 * 90.02528 * 9 8 7 11 11 O 1.21277 * 120.00015 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99973 * 180.02562 * 10 9 8 13 13 C 1.48209 * 119.97528 * 180.02562 * 12 10 9 14 14 C 1.47139 * 110.34987 * 102.45718 * 13 12 10 15 15 C 1.53240 * 111.80799 * 58.23044 * 14 13 12 16 16 N 1.43465 * 108.26455 * 281.67900 * 15 14 13 17 17 C 1.36933 * 118.94259 * 273.78234 * 16 15 14 18 18 H 1.08007 * 120.00304 * 26.80540 * 17 16 15 19 19 C 1.38813 * 120.00480 * 206.80552 * 17 16 15 20 20 N 1.31620 * 119.99690 * 26.37638 * 19 17 16 21 21 Si 1.86800 * 120.00287 * 206.38125 * 19 17 16 22 22 H 1.48494 * 109.47299 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47255 * 59.99504 * 21 19 17 24 24 H 1.48503 * 109.46987 * 299.99898 * 21 19 17 25 25 C 1.48864 * 122.12124 * 93.50139 * 16 15 14 26 26 C 1.43623 * 119.97145 * 359.97438 * 12 10 9 27 27 N 1.28887 * 125.44788 * 180.31144 * 5 2 1 28 28 H 1.08998 * 109.47318 * 299.99808 * 1 2 3 29 29 H 1.09004 * 109.46958 * 60.00509 * 1 2 3 30 30 H 1.09008 * 109.46625 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47309 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47685 * 299.99631 * 3 2 1 33 33 H 1.09005 * 109.47381 * 59.99866 * 3 2 1 34 34 H 1.09008 * 109.47039 * 299.99459 * 4 2 1 35 35 H 1.08990 * 109.47457 * 59.99707 * 4 2 1 36 36 H 1.09000 * 109.47157 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.47187 * 330.02758 * 9 8 7 38 38 H 1.08998 * 109.47096 * 210.02922 * 9 8 7 39 39 H 1.08998 * 109.32643 * 222.73502 * 13 12 10 40 40 H 1.09006 * 109.32275 * 342.36660 * 13 12 10 41 41 H 1.09000 * 109.00713 * 178.90571 * 14 13 12 42 42 H 1.08999 * 109.00392 * 297.77046 * 14 13 12 43 43 H 1.08998 * 109.48949 * 162.04574 * 15 14 13 44 44 H 1.08999 * 109.73719 * 41.45988 * 15 14 13 45 45 H 0.97001 * 120.00073 * 5.77655 * 20 19 17 46 46 H 1.09001 * 109.47471 * 80.87844 * 25 16 15 47 47 H 1.08998 * 109.48464 * 200.90140 * 25 16 15 48 48 H 1.08997 * 108.87674 * 149.91196 * 26 12 10 49 49 H 1.09000 * 108.87785 * 31.46942 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 7 1.2782 -1.2170 2.1092 7 7 2.0399 -1.7371 3.0110 8 6 3.3017 -1.5226 2.6378 9 6 4.5420 -1.9509 3.3788 10 6 4.9550 -3.3241 2.9154 11 8 4.3058 -3.8986 2.0673 12 7 6.0452 -3.9142 3.4443 13 6 6.4512 -5.2645 2.9877 14 6 7.5879 -5.1701 2.0582 15 6 8.7915 -4.4716 2.6999 16 7 8.5494 -3.0575 2.6885 17 6 8.8921 -2.3356 1.5766 18 1 8.9200 -2.8147 0.6090 19 6 9.2037 -0.9878 1.6928 20 7 9.6754 -0.5170 2.8278 21 14 8.9533 0.1576 0.2386 22 1 9.3575 1.5351 0.6181 23 1 7.5212 0.1530 -0.1543 24 1 9.7815 -0.3048 -0.9040 25 6 7.9321 -2.3508 3.8441 26 6 6.8132 -3.2336 4.4490 27 7 3.2573 -0.8630 1.5064 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1391 36 1 3.1301 -0.7208 -1.2494 37 1 4.3357 -1.9754 4.4489 38 1 5.3466 -1.2430 3.1801 39 1 6.7394 -5.8654 3.8502 40 1 5.6123 -5.7411 2.4803 41 1 7.8805 -6.1744 1.7520 42 1 7.2804 -4.6061 1.1776 43 1 9.6907 -4.6962 2.1263 44 1 8.9128 -4.8164 3.7268 45 1 9.8844 -1.1239 3.5551 46 1 8.6926 -2.1584 4.6009 47 1 7.5072 -1.4053 3.5072 48 1 7.2661 -3.9739 5.1085 49 1 6.1457 -2.6027 5.0360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981233604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:47 Heat of formation + Delta-G solvation = 95.694593 kcal Electronic energy + Delta-G solvation = -31114.010859 eV Core-core repulsion = 27114.406689 eV Total energy + Delta-G solvation = -3999.604170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.42883 -41.33323 -38.91082 -38.53758 -36.16885 -34.99333 -34.48588 -33.98858 -32.66316 -30.67613 -29.19478 -28.57372 -28.43197 -26.93684 -25.64587 -25.52233 -24.37164 -22.89119 -21.64980 -21.49442 -20.05273 -19.35763 -18.55484 -18.09692 -17.85536 -17.49643 -16.80467 -16.09789 -15.98576 -15.63014 -15.47846 -15.33233 -15.19685 -15.10601 -14.76810 -14.40018 -14.27289 -14.10892 -13.92103 -13.75240 -13.48172 -13.26893 -13.24410 -12.96831 -12.89734 -12.89129 -12.78834 -12.59257 -12.55394 -12.21421 -12.04090 -12.01392 -11.96942 -11.91280 -11.86145 -11.80997 -11.37611 -11.27208 -10.80570 -10.37663 -9.66471 -8.85031 -8.17657 -5.33857 0.18451 0.89247 1.00290 1.51141 1.52877 1.59293 1.77870 2.07960 2.63308 2.76112 3.09114 3.19919 3.47560 3.49237 3.54872 3.62134 3.64838 4.03236 4.08264 4.14732 4.20576 4.27247 4.39648 4.42319 4.47806 4.48148 4.48946 4.56109 4.57645 4.65520 4.68686 4.69465 4.71845 4.77137 4.85151 4.97337 4.98161 5.03329 5.06892 5.18128 5.20011 5.22697 5.32678 5.41257 5.68242 5.89864 6.37985 6.48857 7.08709 7.18059 7.29300 7.85724 8.22630 9.04751 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011074 B = 0.004395 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.948780 B = 6368.800683 C = 7852.253255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.160 3.840 3 C -0.154 4.154 4 C -0.156 4.156 5 N -0.120 5.120 6 N -0.071 5.071 7 N -0.301 5.301 8 C 0.179 3.821 9 C -0.041 4.041 10 C 0.526 3.474 11 O -0.587 6.587 12 N -0.581 5.581 13 C 0.129 3.871 14 C -0.154 4.154 15 C 0.161 3.839 16 N -0.609 5.609 17 C -0.353 4.353 18 H 0.030 0.970 19 C -0.057 4.057 20 N -0.934 5.934 21 Si 1.089 2.911 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.140 3.860 26 C 0.091 3.909 27 N -0.314 5.314 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.131 0.869 36 H 0.051 0.949 37 H 0.157 0.843 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.021 0.979 43 H 0.030 0.970 44 H 0.063 0.937 45 H 0.260 0.740 46 H 0.031 0.969 47 H 0.037 0.963 48 H 0.100 0.900 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 0.073 -0.762 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.081 3.919 3 C -0.213 4.213 4 C -0.215 4.215 5 N -0.036 5.036 6 N -0.063 5.063 7 N -0.171 5.171 8 C -0.104 4.104 9 C -0.083 4.083 10 C 0.314 3.686 11 O -0.468 6.468 12 N -0.311 5.311 13 C 0.008 3.992 14 C -0.195 4.195 15 C 0.034 3.966 16 N -0.332 5.332 17 C -0.483 4.483 18 H 0.047 0.953 19 C -0.255 4.255 20 N -0.576 5.576 21 Si 0.916 3.084 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.209 1.209 25 C 0.015 3.985 26 C -0.034 4.034 27 N -0.164 5.164 28 H 0.091 0.909 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.070 0.930 37 H 0.175 0.825 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.119 0.881 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.462 1.422 -1.814 16.622 hybrid contribution 1.037 -1.701 0.248 2.007 sum -15.425 -0.279 -1.566 15.507 Atomic orbital electron populations 1.22123 0.87816 1.04395 1.05891 1.22034 0.98114 0.93290 0.78431 1.22265 1.02157 0.91142 1.05690 1.22263 1.01914 1.00882 0.96396 1.50957 1.00386 1.33836 1.18384 1.78695 1.22062 1.09655 0.95912 1.75690 1.00893 1.19301 1.21228 1.24905 0.95139 0.98414 0.91960 1.20002 0.91398 0.94959 1.01990 1.20362 0.80464 0.86984 0.80836 1.90630 1.55929 1.66392 1.33859 1.47411 1.25158 1.18147 1.40432 1.20683 0.96908 0.82447 0.99180 1.21571 0.98027 1.00829 0.99035 1.20304 0.94285 0.83471 0.98498 1.43868 1.69811 1.03776 1.15771 1.19957 1.45302 0.95726 0.87335 0.95260 1.26551 0.96892 0.98045 1.04035 1.70906 1.41262 1.38759 1.06666 0.83184 0.76430 0.75245 0.73532 1.21098 1.21786 1.20865 1.22052 0.92994 0.94545 0.88931 1.22030 0.94133 0.97655 0.89580 1.74645 1.04326 1.20887 1.16581 0.90898 0.85436 0.91724 0.92560 0.85320 0.91545 0.92739 0.85092 0.92985 0.82532 0.86224 0.87735 0.91307 0.89664 0.96048 0.95156 0.91864 0.92912 0.95136 0.94406 0.88138 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.91 71.98 0.57 -1.45 16 2 C 0.16 3.31 1.30 3.60 0.00 3.31 16 3 C -0.15 -2.61 8.66 71.98 0.62 -1.98 16 4 C -0.16 -3.08 8.67 71.98 0.62 -2.46 16 5 N -0.12 -3.74 3.73 -152.40 -0.57 -4.31 16 6 N -0.07 -2.39 12.24 37.02 0.45 -1.93 16 7 N -0.30 -11.07 12.50 -51.27 -0.64 -11.71 16 8 C 0.18 6.66 6.86 138.55 0.95 7.61 16 9 C -0.04 -1.37 4.88 29.10 0.14 -1.23 16 10 C 0.53 20.14 7.66 87.66 0.67 20.81 16 11 O -0.59 -26.95 15.47 -3.02 -0.05 -27.00 16 12 N -0.58 -19.57 2.46 -831.32 -2.04 -21.61 16 13 C 0.13 4.02 5.69 84.23 0.48 4.50 16 14 C -0.15 -5.45 5.63 28.85 0.16 -5.29 16 15 C 0.16 6.27 5.59 87.02 0.49 6.75 16 16 N -0.61 -28.48 2.40 -699.26 -1.68 -30.16 16 17 C -0.35 -19.55 9.12 84.03 0.77 -18.78 16 18 H 0.03 1.73 7.96 -2.91 -0.02 1.71 16 19 C -0.06 -3.17 4.60 84.86 0.39 -2.78 16 20 N -0.93 -54.08 12.63 21.65 0.27 -53.80 16 21 Si 1.09 51.95 29.99 68.60 2.06 54.01 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 C 0.14 5.75 5.06 86.54 0.44 6.19 16 26 C 0.09 2.67 5.05 87.53 0.44 3.11 16 27 N -0.31 -11.76 11.83 -51.20 -0.61 -12.36 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.16 3.88 7.37 -2.38 -0.02 3.86 16 38 H 0.12 4.19 7.31 -2.39 -0.02 4.17 16 39 H 0.10 2.45 8.06 -2.39 -0.02 2.43 16 40 H 0.07 2.32 7.12 -2.38 -0.02 2.30 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.02 0.94 7.91 -2.39 -0.02 0.93 16 43 H 0.03 1.26 8.02 -2.39 -0.02 1.24 16 44 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 45 H 0.26 15.01 6.37 -92.71 -0.59 14.42 16 46 H 0.03 1.29 7.11 -2.39 -0.02 1.27 16 47 H 0.04 1.77 6.20 -2.39 -0.01 1.76 16 48 H 0.10 2.39 7.73 -2.39 -0.02 2.37 16 49 H 0.10 2.42 6.38 -2.39 -0.02 2.40 16 Total: -1.00 -80.09 387.77 5.08 -75.02 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.12 Total: 15.56 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 6.75 Total: 18.30 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -4.81 Total: -135.89 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.06 Total: 54.01 kcal Total: -80.09 5.08 -75.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981233604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.711 kcal (2) G-P(sol) polarization free energy of solvation -80.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds