Wall clock time and date at job start Tue Mar 31 2020 19:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.50695 * 109.47031 * 120.00391 * 2 1 3 5 5 N 1.31071 * 126.66146 * 299.94939 * 4 2 1 6 6 N 1.28842 * 107.99390 * 180.02562 * 5 4 2 7 7 N 1.28737 * 109.39334 * 359.73732 * 6 5 4 8 8 N 1.29015 * 108.80954 * 0.43948 * 7 6 5 9 9 C 1.46508 * 126.43506 * 179.83782 * 8 7 6 10 10 C 1.50698 * 109.46757 * 269.68194 * 9 8 7 11 11 O 1.21284 * 120.00276 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99873 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99637 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47378 * 324.99749 * 13 12 10 15 15 C 1.52999 * 109.47050 * 85.00741 * 13 12 10 16 16 C 1.52997 * 109.46991 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47131 * 299.99311 * 16 15 13 18 18 C 1.53002 * 109.46972 * 60.00459 * 17 16 15 19 19 H 1.08996 * 109.47407 * 59.99513 * 18 17 16 20 20 N 1.46496 * 109.47037 * 180.02562 * 18 17 16 21 21 C 1.36941 * 119.99878 * 274.99338 * 20 18 17 22 22 H 1.08003 * 119.99725 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99972 * 179.97438 * 21 20 18 24 24 N 1.31609 * 119.99981 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99751 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46888 * 60.00507 * 25 23 21 27 27 H 1.48499 * 109.46966 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47488 * 300.00489 * 25 23 21 29 29 C 1.52997 * 109.46817 * 299.99733 * 18 17 16 30 30 H 1.08998 * 109.47256 * 59.99916 * 1 2 3 31 31 H 1.09004 * 109.47418 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47159 * 299.99732 * 1 2 3 33 33 H 1.09005 * 109.46823 * 239.99847 * 2 1 3 34 34 H 1.09003 * 109.47018 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46943 * 299.99790 * 3 2 1 36 36 H 1.08995 * 109.47000 * 59.99934 * 3 2 1 37 37 H 1.09002 * 109.47077 * 149.68782 * 9 8 7 38 38 H 1.08996 * 109.46898 * 29.68613 * 9 8 7 39 39 H 0.96998 * 120.00328 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.46719 * 299.99449 * 15 13 12 41 41 H 1.08993 * 109.47839 * 59.99291 * 15 13 12 42 42 H 1.09001 * 109.47289 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.47611 * 59.99933 * 16 15 13 44 44 H 1.08996 * 109.47452 * 300.00000 * 17 16 15 45 45 H 1.09000 * 109.47054 * 180.02562 * 17 16 15 46 46 H 0.97001 * 120.00575 * 95.00206 * 20 18 17 47 47 H 0.97000 * 120.00093 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.47502 * 300.00518 * 29 18 17 49 49 H 1.09001 * 109.47289 * 180.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7983 -0.3780 2.4764 6 7 2.3997 -1.2283 3.2349 7 7 3.0068 -2.0978 2.5050 8 7 2.8090 -1.8093 1.2632 9 6 3.3271 -2.5436 0.1061 10 6 4.6650 -1.9752 -0.2915 11 8 5.1393 -1.0485 0.3307 12 7 5.3349 -2.4975 -1.3378 13 6 6.6358 -1.9454 -1.7239 14 1 6.6382 -0.8686 -1.5549 15 6 7.7359 -2.5962 -0.8831 16 6 9.0946 -2.0200 -1.2867 17 6 9.3494 -2.3046 -2.7682 18 6 8.2494 -1.6538 -3.6092 19 1 8.2519 -0.5770 -3.4403 20 7 8.4930 -1.9269 -5.0277 21 6 9.3362 -1.1209 -5.7451 22 1 9.8219 -0.2842 -5.2649 23 6 9.5676 -1.3800 -7.0891 24 7 8.9762 -2.3999 -7.6739 25 14 10.7184 -0.2809 -8.0674 26 1 12.0719 -0.3140 -7.4576 27 1 10.7943 -0.7665 -9.4687 28 1 10.2033 1.1119 -8.0540 29 6 6.8907 -2.2300 -3.2055 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.6300 -2.4483 -0.7265 38 1 3.4418 -3.5960 0.3653 39 1 4.9558 -3.2389 -1.8352 40 1 7.5541 -2.3937 0.1725 41 1 7.7336 -3.6729 -1.0521 42 1 9.8783 -2.4833 -0.6874 43 1 9.0973 -0.9431 -1.1179 44 1 9.3469 -3.3814 -2.9370 45 1 10.3176 -1.8945 -3.0556 46 1 8.0571 -2.6785 -5.4588 47 1 9.1375 -2.5807 -8.6132 48 1 6.8881 -3.3069 -3.3742 49 1 6.1070 -1.7668 -3.8049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981374183.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:34 Heat of formation + Delta-G solvation = 72.331178 kcal Electronic energy + Delta-G solvation = -29418.917374 eV Core-core repulsion = 25418.300090 eV Total energy + Delta-G solvation = -4000.617284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.43778 -40.40102 -38.26263 -36.53567 -35.67527 -34.93426 -33.54954 -31.77283 -31.23897 -30.37205 -28.72511 -27.77785 -27.62744 -24.71971 -24.01863 -23.67177 -22.27700 -21.77170 -20.96761 -20.65167 -19.63822 -18.26163 -18.11026 -17.12452 -16.52810 -16.34782 -16.06683 -15.67724 -14.99620 -14.81290 -14.50610 -14.12903 -14.08962 -13.77423 -13.67675 -13.58040 -13.29450 -13.13075 -12.82097 -12.61314 -12.42683 -12.29719 -12.18875 -12.06209 -11.76850 -11.62637 -11.59750 -11.21507 -11.11581 -11.07219 -10.93865 -10.84589 -10.53082 -10.48757 -10.33074 -10.26709 -10.19455 -9.85340 -9.71580 -9.29730 -8.94974 -7.05065 -5.84520 -3.13544 0.91736 1.49200 2.02383 2.05205 2.70647 3.39069 3.44089 3.44464 3.51550 3.75272 4.02642 4.07168 4.26453 4.50242 4.52467 4.63986 4.77638 4.81355 4.92081 5.13836 5.16223 5.21610 5.31035 5.38171 5.40988 5.44429 5.46361 5.48101 5.53764 5.58497 5.72775 5.74738 5.80319 5.82827 5.88269 5.88417 6.00981 6.07438 6.18236 6.31341 6.40891 6.47430 6.60793 6.85837 7.01303 7.05115 7.63293 7.69997 8.34124 8.39159 9.45511 10.01451 10.36101 11.38029 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017528 B = 0.002301 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.030537 B =12164.113904 C =13030.451819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.145 4.145 4 C 0.204 3.796 5 N -0.300 5.300 6 N -0.073 5.073 7 N -0.086 5.086 8 N -0.295 5.295 9 C 0.090 3.910 10 C 0.499 3.501 11 O -0.518 6.518 12 N -0.712 5.712 13 C 0.150 3.850 14 H 0.090 0.910 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.129 4.129 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.403 0.597 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.383 0.617 47 H 0.256 0.744 48 H 0.066 0.934 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 -1.536 13.418 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.074 4.074 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.072 5.072 8 N -0.095 5.095 9 C -0.036 4.036 10 C 0.281 3.719 11 O -0.393 6.393 12 N -0.363 5.363 13 C 0.046 3.954 14 H 0.108 0.892 15 C -0.163 4.163 16 C -0.154 4.154 17 C -0.178 4.178 18 C 0.074 3.926 19 H 0.066 0.934 20 N -0.364 5.364 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.168 4.168 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.238 0.762 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.217 0.783 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.822 -0.896 15.213 21.967 hybrid contribution 0.553 -0.312 -1.973 2.073 sum -15.269 -1.207 13.239 20.246 Atomic orbital electron populations 1.21857 0.91879 1.02665 1.03804 1.19813 0.97352 0.96687 0.89463 1.21836 1.02058 0.92923 1.03477 1.26108 0.94652 0.88634 0.98019 1.74954 1.20636 1.20932 0.98343 1.78607 1.06864 0.98822 1.22400 1.78885 1.19171 1.21919 0.87194 1.47848 1.33946 1.20908 1.06824 1.22027 0.96344 0.98757 0.86459 1.20254 0.86088 0.84054 0.81483 1.90835 1.68344 1.27983 1.52116 1.46059 1.21635 1.37078 1.31548 1.21147 0.80183 0.99161 0.94912 0.89212 1.21884 0.94963 1.00261 0.99207 1.21484 0.95475 1.00756 0.97643 1.22306 1.01436 1.01191 0.92865 1.20081 0.89824 0.97032 0.85712 0.93352 1.42379 1.54912 1.35004 1.04109 1.19190 1.18971 1.07168 0.91761 0.91196 1.24732 1.00687 0.98489 0.96926 1.69637 1.46950 1.30071 1.11543 0.86282 0.80753 0.79954 0.79290 1.21229 1.21683 1.21235 1.22108 1.00177 1.01964 0.92545 0.90649 0.92404 0.90929 0.89092 0.91808 0.90749 0.91057 0.84265 0.83898 0.76224 0.92191 0.91841 0.92352 0.92167 0.92590 0.91780 0.78325 0.93436 0.91506 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.18 37.16 0.34 -0.43 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.11 9.18 37.16 0.34 -0.77 16 4 C 0.20 2.15 6.64 -155.44 -1.03 1.11 16 5 N -0.30 -4.04 12.36 32.70 0.40 -3.64 16 6 N -0.07 -1.09 13.43 60.35 0.81 -0.28 16 7 N -0.09 -1.16 13.29 60.35 0.80 -0.36 16 8 N -0.29 -3.05 2.83 -59.44 -0.17 -3.22 16 9 C 0.09 0.54 6.57 -5.19 -0.03 0.50 16 10 C 0.50 4.75 7.86 -10.99 -0.09 4.66 16 11 O -0.52 -7.55 16.09 5.55 0.09 -7.46 16 12 N -0.71 -5.89 5.08 -53.80 -0.27 -6.16 16 13 C 0.15 1.75 2.46 -67.93 -0.17 1.58 16 14 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 15 C -0.12 -1.50 5.49 -26.73 -0.15 -1.64 16 16 C -0.11 -1.54 5.92 -26.73 -0.16 -1.69 16 17 C -0.14 -2.25 5.50 -26.73 -0.15 -2.40 16 18 C 0.18 3.28 2.77 -67.93 -0.19 3.10 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 N -0.72 -16.81 5.12 -53.43 -0.27 -17.08 16 21 C -0.24 -6.35 9.93 -15.06 -0.15 -6.49 16 22 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 25 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 C -0.13 -1.74 4.86 -26.73 -0.13 -1.87 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.44 6.85 -51.93 -0.36 0.09 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.14 0.25 7.13 -51.93 -0.37 -0.12 16 38 H 0.14 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.40 2.01 8.60 -40.82 -0.35 1.66 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.38 9.42 7.80 -40.82 -0.32 9.10 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -35.33 401.55 -6.91 -42.24 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.10 Total: 4.73 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.95 Total: -5.16 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 2.03 Total: -57.09 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.33 -6.91 -42.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981374183.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.566 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds