Wall clock time and date at job start Tue Mar 31 2020 19:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.50695 * 109.47031 * 120.00391 * 2 1 3 5 5 N 1.31071 * 126.66146 * 299.94939 * 4 2 1 6 6 N 1.28842 * 107.99390 * 180.02562 * 5 4 2 7 7 N 1.28737 * 109.39334 * 359.73732 * 6 5 4 8 8 N 1.29015 * 108.80954 * 0.43948 * 7 6 5 9 9 C 1.46508 * 126.43506 * 179.83782 * 8 7 6 10 10 C 1.50698 * 109.46757 * 269.68194 * 9 8 7 11 11 O 1.21284 * 120.00276 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99873 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99637 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47378 * 324.99749 * 13 12 10 15 15 C 1.52999 * 109.47050 * 85.00741 * 13 12 10 16 16 C 1.52997 * 109.46991 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47131 * 299.99311 * 16 15 13 18 18 C 1.53002 * 109.46972 * 60.00459 * 17 16 15 19 19 H 1.08996 * 109.47407 * 59.99513 * 18 17 16 20 20 N 1.46496 * 109.47037 * 180.02562 * 18 17 16 21 21 C 1.36941 * 119.99878 * 274.99338 * 20 18 17 22 22 H 1.08003 * 119.99725 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99972 * 179.97438 * 21 20 18 24 24 N 1.31609 * 119.99981 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99751 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46888 * 60.00507 * 25 23 21 27 27 H 1.48499 * 109.46966 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47488 * 300.00489 * 25 23 21 29 29 C 1.52997 * 109.46817 * 299.99733 * 18 17 16 30 30 H 1.08998 * 109.47256 * 59.99916 * 1 2 3 31 31 H 1.09004 * 109.47418 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47159 * 299.99732 * 1 2 3 33 33 H 1.09005 * 109.46823 * 239.99847 * 2 1 3 34 34 H 1.09003 * 109.47018 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46943 * 299.99790 * 3 2 1 36 36 H 1.08995 * 109.47000 * 59.99934 * 3 2 1 37 37 H 1.09002 * 109.47077 * 149.68782 * 9 8 7 38 38 H 1.08996 * 109.46898 * 29.68613 * 9 8 7 39 39 H 0.96998 * 120.00328 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.46719 * 299.99449 * 15 13 12 41 41 H 1.08993 * 109.47839 * 59.99291 * 15 13 12 42 42 H 1.09001 * 109.47289 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.47611 * 59.99933 * 16 15 13 44 44 H 1.08996 * 109.47452 * 300.00000 * 17 16 15 45 45 H 1.09000 * 109.47054 * 180.02562 * 17 16 15 46 46 H 0.97001 * 120.00575 * 95.00206 * 20 18 17 47 47 H 0.97000 * 120.00093 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.47502 * 300.00518 * 29 18 17 49 49 H 1.09001 * 109.47289 * 180.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7983 -0.3780 2.4764 6 7 2.3997 -1.2283 3.2349 7 7 3.0068 -2.0978 2.5050 8 7 2.8090 -1.8093 1.2632 9 6 3.3271 -2.5436 0.1061 10 6 4.6650 -1.9752 -0.2915 11 8 5.1393 -1.0485 0.3307 12 7 5.3349 -2.4975 -1.3378 13 6 6.6358 -1.9454 -1.7239 14 1 6.6382 -0.8686 -1.5549 15 6 7.7359 -2.5962 -0.8831 16 6 9.0946 -2.0200 -1.2867 17 6 9.3494 -2.3046 -2.7682 18 6 8.2494 -1.6538 -3.6092 19 1 8.2519 -0.5770 -3.4403 20 7 8.4930 -1.9269 -5.0277 21 6 9.3362 -1.1209 -5.7451 22 1 9.8219 -0.2842 -5.2649 23 6 9.5676 -1.3800 -7.0891 24 7 8.9762 -2.3999 -7.6739 25 14 10.7184 -0.2809 -8.0674 26 1 12.0719 -0.3140 -7.4576 27 1 10.7943 -0.7665 -9.4687 28 1 10.2033 1.1119 -8.0540 29 6 6.8907 -2.2300 -3.2055 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.6300 -2.4483 -0.7265 38 1 3.4418 -3.5960 0.3653 39 1 4.9558 -3.2389 -1.8352 40 1 7.5541 -2.3937 0.1725 41 1 7.7336 -3.6729 -1.0521 42 1 9.8783 -2.4833 -0.6874 43 1 9.0973 -0.9431 -1.1179 44 1 9.3469 -3.3814 -2.9370 45 1 10.3176 -1.8945 -3.0556 46 1 8.0571 -2.6785 -5.4588 47 1 9.1375 -2.5807 -8.6132 48 1 6.8881 -3.3069 -3.3742 49 1 6.1070 -1.7668 -3.8049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981374183.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:33 Heat of formation + Delta-G solvation = 46.794758 kcal Electronic energy + Delta-G solvation = -29420.024716 eV Core-core repulsion = 25418.300090 eV Total energy + Delta-G solvation = -4001.724626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.29560 -41.27284 -39.42793 -37.17802 -36.54202 -36.20123 -34.94116 -32.96673 -32.57032 -31.32222 -29.88645 -29.04142 -28.12261 -25.71627 -25.49023 -24.73198 -23.34064 -22.87226 -21.78990 -21.50194 -20.88345 -19.37295 -18.84033 -18.76273 -17.41713 -17.32431 -16.81553 -16.53423 -16.27479 -15.84829 -15.54802 -15.40279 -15.13430 -15.06137 -14.83777 -14.48773 -14.23823 -14.20105 -13.85079 -13.54502 -13.44535 -13.18493 -13.10531 -12.90791 -12.79871 -12.68780 -12.51090 -12.30979 -12.29640 -12.28490 -12.17698 -12.05439 -11.97291 -11.90164 -11.66934 -11.55003 -11.41072 -11.15288 -10.90461 -10.84948 -10.18961 -8.98765 -7.93580 -5.20643 0.09006 0.83889 1.13158 1.32043 1.48390 1.49514 1.55602 1.96894 2.56972 2.87384 3.15247 3.38013 3.41100 3.60242 3.63386 3.84584 3.91365 4.00828 4.02542 4.05033 4.19523 4.24146 4.30139 4.37120 4.41632 4.51796 4.57569 4.64007 4.65567 4.76182 4.76665 4.82479 4.89949 4.94412 4.99459 5.07992 5.12843 5.15740 5.21464 5.27017 5.33203 5.35305 5.38673 5.50505 5.53791 5.64593 6.29481 6.36494 7.03627 7.36527 7.48528 8.12388 8.35913 9.29332 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017528 B = 0.002301 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.030537 B =12164.113904 C =13030.451819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.102 5.102 8 N -0.291 5.291 9 C 0.086 3.914 10 C 0.501 3.499 11 O -0.573 6.573 12 N -0.695 5.695 13 C 0.162 3.838 14 H 0.068 0.932 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.127 4.127 18 C 0.177 3.823 19 H 0.034 0.966 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.964 3.036 26 H -0.282 1.282 27 H -0.295 1.295 28 H -0.280 1.280 29 C -0.113 4.113 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.038 0.962 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.191 0.809 38 H 0.178 0.822 39 H 0.424 0.576 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.081 0.919 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.780 -2.504 12.848 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.088 5.088 8 N -0.092 5.092 9 C -0.037 4.037 10 C 0.286 3.714 11 O -0.452 6.452 12 N -0.347 5.347 13 C 0.056 3.944 14 H 0.086 0.914 15 C -0.156 4.156 16 C -0.147 4.147 17 C -0.168 4.168 18 C 0.068 3.932 19 H 0.052 0.948 20 N -0.374 5.374 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.794 3.206 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.206 1.206 29 C -0.152 4.152 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.208 0.792 38 H 0.195 0.805 39 H 0.262 0.738 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.208 0.792 47 H 0.060 0.940 48 H 0.099 0.901 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.213 -1.886 14.665 22.691 hybrid contribution 1.009 0.020 -1.779 2.046 sum -16.204 -1.866 12.886 20.787 Atomic orbital electron populations 1.21850 0.90387 1.03406 1.04106 1.20106 0.98459 0.95881 0.88854 1.21822 1.00368 0.93881 1.04064 1.26743 0.93664 0.88310 0.98196 1.74863 1.21635 1.21527 0.99825 1.78563 1.08165 0.99802 1.23664 1.78767 1.19326 1.22130 0.88596 1.48114 1.33311 1.20958 1.06820 1.22553 0.95041 0.99557 0.86590 1.20791 0.86962 0.83038 0.80632 1.90836 1.69898 1.30552 1.53909 1.45750 1.20266 1.37272 1.31454 1.20744 0.81914 0.98202 0.93491 0.91352 1.21810 0.93904 1.01065 0.98805 1.21407 0.97076 1.00716 0.95481 1.22112 0.99372 1.00651 0.94632 1.20297 0.92874 0.96727 0.83332 0.94818 1.42535 1.54394 1.34333 1.06099 1.19510 1.18423 1.06946 0.92095 0.91247 1.25429 1.02774 1.00108 0.98079 1.69768 1.48744 1.31786 1.11382 0.85348 0.79132 0.78536 0.77588 1.20800 1.22148 1.20606 1.21866 0.97251 1.02412 0.93658 0.88392 0.91453 0.92593 0.86023 0.94315 0.88296 0.92392 0.79158 0.80499 0.73750 0.92618 0.90201 0.91020 0.92770 0.92557 0.94407 0.79246 0.94043 0.90060 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.18 71.98 0.66 -0.44 16 2 C -0.01 -0.13 3.26 -11.54 -0.04 -0.17 16 3 C -0.14 -2.02 9.18 71.98 0.66 -1.36 16 4 C 0.21 4.11 6.64 138.13 0.92 5.03 16 5 N -0.33 -8.94 12.36 -50.46 -0.62 -9.56 16 6 N -0.11 -3.28 13.43 37.01 0.50 -2.79 16 7 N -0.10 -2.68 13.29 37.02 0.49 -2.19 16 8 N -0.29 -5.43 2.83 -341.97 -0.97 -6.40 16 9 C 0.09 0.67 6.57 85.63 0.56 1.24 16 10 C 0.50 8.12 7.86 87.66 0.69 8.81 16 11 O -0.57 -16.14 16.09 -3.04 -0.05 -16.19 16 12 N -0.70 -9.14 5.08 -442.52 -2.25 -11.38 16 13 C 0.16 3.44 2.46 44.99 0.11 3.55 16 14 H 0.07 1.81 7.58 -2.39 -0.02 1.80 16 15 C -0.12 -2.56 5.49 30.59 0.17 -2.40 16 16 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 17 C -0.13 -4.11 5.50 30.59 0.17 -3.94 16 18 C 0.18 6.22 2.77 44.99 0.12 6.34 16 19 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 20 N -0.73 -34.09 5.12 -322.94 -1.65 -35.75 16 21 C -0.24 -12.63 9.93 84.03 0.83 -11.80 16 22 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 24 N -0.97 -56.46 13.06 21.65 0.28 -56.18 16 25 Si 0.96 44.83 29.55 68.60 2.03 46.86 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 C -0.11 -2.84 4.86 30.60 0.15 -2.69 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.12 0.63 6.85 -2.38 -0.02 0.61 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.19 -0.47 7.13 -2.39 -0.02 -0.49 16 38 H 0.18 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.42 2.24 8.60 -92.71 -0.80 1.45 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.38 18.43 7.80 -92.71 -0.72 17.71 16 47 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 48 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -81.11 401.55 2.86 -78.26 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.56 Total: 19.20 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.65 Total: -3.89 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -4.22 Total: -124.24 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.05 Total: -16.19 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -81.11 2.86 -78.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981374183.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.050 kcal (2) G-P(sol) polarization free energy of solvation -81.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds