Wall clock time and date at job start Tue Mar 31 2020 19:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46729 * 2 1 4 4 C 1.50692 * 109.47194 * 120.00017 * 2 1 3 5 5 N 1.31072 * 126.66245 * 300.16838 * 4 2 1 6 6 N 1.28845 * 107.98838 * 180.24844 * 5 4 2 7 7 N 1.28733 * 109.40056 * 359.75001 * 6 5 4 8 8 N 1.29021 * 108.80628 * 0.02562 * 7 6 5 9 9 C 1.46507 * 126.43711 * 179.97438 * 8 7 6 10 10 C 1.50690 * 109.47298 * 90.02266 * 9 8 7 11 11 O 1.21284 * 120.00098 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00050 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99637 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47378 * 324.99749 * 13 12 10 15 15 C 1.53002 * 109.46876 * 85.00417 * 13 12 10 16 16 C 1.53001 * 109.46637 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47486 * 299.99742 * 16 15 13 18 18 C 1.53002 * 109.46972 * 60.00463 * 17 16 15 19 19 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.47411 * 59.99834 * 18 17 16 21 21 C 1.36929 * 119.99833 * 84.99952 * 20 18 17 22 22 H 1.08000 * 120.00309 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99926 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99705 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00172 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46950 * 90.00335 * 25 23 21 27 27 H 1.48500 * 109.47263 * 210.00268 * 25 23 21 28 28 H 1.48497 * 109.47277 * 330.00569 * 25 23 21 29 29 C 1.52997 * 109.46817 * 299.99733 * 18 17 16 30 30 H 1.08997 * 109.46969 * 299.99526 * 1 2 3 31 31 H 1.09000 * 109.47178 * 59.99566 * 1 2 3 32 32 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46969 * 240.00474 * 2 1 3 34 34 H 1.09001 * 109.46841 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46969 * 299.99963 * 3 2 1 36 36 H 1.08997 * 109.47008 * 60.00498 * 3 2 1 37 37 H 1.09004 * 109.47055 * 330.02004 * 9 8 7 38 38 H 1.09003 * 109.46557 * 210.02957 * 9 8 7 39 39 H 0.96998 * 120.00021 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.47407 * 59.99957 * 15 13 12 41 41 H 1.08992 * 109.47063 * 299.99561 * 15 13 12 42 42 H 1.09001 * 109.47109 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.47086 * 60.00158 * 16 15 13 44 44 H 1.08996 * 109.47452 * 300.00003 * 17 16 15 45 45 H 1.09000 * 109.47054 * 180.02562 * 17 16 15 46 46 H 0.97000 * 119.99634 * 265.00306 * 20 18 17 47 47 H 0.97006 * 119.99630 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.47533 * 179.97438 * 29 18 17 49 49 H 1.08996 * 109.47853 * 300.00202 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7951 -0.3802 2.4764 6 7 2.4018 -1.2268 3.2349 7 7 3.0156 -2.0916 2.5050 8 7 2.8097 -1.8087 1.2632 9 6 3.3290 -2.5421 0.1060 10 6 2.3502 -3.6182 -0.2873 11 8 1.3199 -3.7585 0.3372 12 7 2.6191 -4.4241 -1.3335 13 6 1.6672 -5.4699 -1.7162 14 1 1.1923 -5.8738 -0.8221 15 6 0.5993 -4.8755 -2.6367 16 6 -0.3944 -5.9679 -3.0368 17 6 0.3463 -7.0872 -3.7712 18 6 1.4141 -7.6816 -2.8506 19 1 1.9416 -8.4793 -3.3737 20 7 0.7758 -8.2249 -1.6491 21 6 0.2653 -9.4954 -1.6600 22 1 0.3329 -10.0969 -2.5544 23 6 -0.3391 -10.0104 -0.5214 24 7 -0.4219 -9.2771 0.5685 25 14 -1.0360 -11.7434 -0.5364 26 1 0.0144 -12.7031 -0.1110 27 1 -2.1867 -11.8223 0.3990 28 1 -1.4898 -12.0825 -1.9091 29 6 2.4079 -6.5893 -2.4506 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 4.2853 -2.9973 0.3637 38 1 3.4671 -1.8539 -0.7280 39 1 3.4429 -4.3116 -1.8332 40 1 1.0742 -4.4717 -3.5308 41 1 0.0719 -4.0779 -2.1137 42 1 -1.1555 -5.5444 -3.6922 43 1 -0.8694 -6.3721 -2.1428 44 1 0.8212 -6.6831 -4.6651 45 1 -0.3618 -7.8652 -4.0565 46 1 0.7147 -7.6844 -0.8459 47 1 -0.8439 -9.6371 1.3643 48 1 3.1685 -7.0125 -1.7944 49 1 2.8829 -6.1850 -3.3445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981374185.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:43 Heat of formation + Delta-G solvation = 77.580073 kcal Electronic energy + Delta-G solvation = -30094.977144 eV Core-core repulsion = 26094.587469 eV Total energy + Delta-G solvation = -4000.389675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.29865 -40.23693 -38.27529 -36.45171 -35.53484 -34.71389 -33.18543 -31.64891 -31.02786 -30.22441 -28.63704 -27.92630 -27.57088 -24.60711 -23.86779 -23.58441 -22.14330 -21.98676 -21.01388 -20.63230 -18.93254 -18.00539 -17.86728 -17.27949 -16.41050 -16.20633 -15.75454 -15.55093 -14.88148 -14.70393 -14.64529 -13.99633 -13.94772 -13.65234 -13.61047 -13.53882 -13.16779 -13.04329 -12.56310 -12.48276 -12.28595 -12.14476 -11.97891 -11.85290 -11.70266 -11.52531 -11.50171 -11.46055 -11.10119 -11.00072 -10.87034 -10.78809 -10.39044 -10.28900 -10.19110 -10.14781 -10.04250 -9.66778 -9.57646 -9.11690 -8.86923 -6.98029 -5.76452 -3.06493 1.05669 1.63829 2.18278 2.23772 2.87763 3.42762 3.47686 3.50261 3.61478 3.87092 4.12251 4.22268 4.38557 4.57882 4.58739 4.71331 4.87002 4.97152 5.08002 5.23829 5.26931 5.34397 5.36583 5.47759 5.52662 5.54536 5.57456 5.59246 5.61913 5.71974 5.78757 5.80636 5.91874 5.95086 5.97370 5.98791 6.06865 6.19786 6.30904 6.47725 6.50839 6.69712 6.75136 6.92787 7.02709 7.23987 7.69023 7.91784 8.40879 8.53226 9.52087 10.08501 10.42182 11.45459 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002807 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.051614 B = 9974.166360 C =10752.977927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.073 5.073 7 N -0.082 5.082 8 N -0.294 5.294 9 C 0.091 3.909 10 C 0.495 3.505 11 O -0.508 6.508 12 N -0.714 5.714 13 C 0.145 3.855 14 H 0.101 0.899 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.136 4.136 18 C 0.179 3.821 19 H 0.052 0.948 20 N -0.722 5.722 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.127 4.127 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.398 0.602 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.384 0.616 47 H 0.256 0.744 48 H 0.069 0.931 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.934 20.701 -10.123 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.078 4.078 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.067 5.067 8 N -0.095 5.095 9 C -0.035 4.035 10 C 0.277 3.723 11 O -0.381 6.381 12 N -0.366 5.366 13 C 0.042 3.958 14 H 0.119 0.881 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.068 3.932 19 H 0.070 0.930 20 N -0.364 5.364 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.166 4.166 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.232 0.768 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.235 20.236 -8.220 23.714 hybrid contribution 0.023 -0.980 -0.908 1.337 sum 9.258 19.256 -9.128 23.234 Atomic orbital electron populations 1.21840 0.91644 1.03499 1.03360 1.19780 0.97973 0.95896 0.89499 1.21852 1.01103 0.93485 1.03713 1.26060 0.94792 0.88910 0.97995 1.74938 1.19621 1.22002 0.98328 1.78613 1.06763 0.98927 1.22363 1.78921 1.20201 1.20477 0.87147 1.47851 1.34750 1.19987 1.06863 1.22019 0.99468 0.95705 0.86330 1.20246 0.87509 0.83116 0.81442 1.90888 1.25888 1.69499 1.51844 1.46054 1.24305 1.34667 1.31546 1.21185 0.89087 0.86025 0.99482 0.88101 1.21835 0.96957 0.98659 0.98309 1.21359 0.96970 0.95042 1.01460 1.22186 0.99849 0.97947 0.97618 1.20155 0.91100 0.92450 0.89448 0.92989 1.42507 1.68978 1.14926 1.10027 1.19198 1.30393 0.90590 0.97169 0.91201 1.24751 1.01698 0.98253 0.96085 1.69665 1.49293 1.36427 1.02294 0.86233 0.78455 0.84646 0.77075 1.21779 1.21815 1.20814 1.22090 0.99078 0.95932 0.99534 0.91026 0.90918 0.91688 0.89239 0.92448 0.90805 0.90904 0.83997 0.84520 0.76760 0.92604 0.92400 0.93155 0.90314 0.93840 0.91903 0.78098 0.93428 0.91270 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.18 37.16 0.34 -0.89 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -0.83 9.18 37.16 0.34 -0.49 16 4 C 0.20 2.38 6.64 -155.43 -1.03 1.35 16 5 N -0.30 -4.51 12.36 32.70 0.40 -4.11 16 6 N -0.07 -1.23 13.43 60.35 0.81 -0.42 16 7 N -0.08 -1.28 13.29 60.35 0.80 -0.48 16 8 N -0.29 -3.56 2.83 -59.44 -0.17 -3.73 16 9 C 0.09 0.68 6.57 -5.19 -0.03 0.65 16 10 C 0.50 5.85 7.86 -10.99 -0.09 5.76 16 11 O -0.51 -9.07 16.09 5.55 0.09 -8.98 16 12 N -0.71 -7.15 5.08 -53.80 -0.27 -7.43 16 13 C 0.15 2.06 2.28 -67.92 -0.16 1.91 16 14 H 0.10 1.97 5.94 -51.93 -0.31 1.66 16 15 C -0.12 -1.61 5.50 -26.73 -0.15 -1.76 16 16 C -0.11 -1.77 5.76 -26.73 -0.15 -1.92 16 17 C -0.14 -2.19 5.61 -26.73 -0.15 -2.34 16 18 C 0.18 3.20 3.10 -67.93 -0.21 2.99 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -17.08 4.28 -53.42 -0.23 -17.31 16 21 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 25 Si 0.90 22.34 29.55 -169.99 -5.02 17.32 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 C -0.13 -1.76 5.08 -26.73 -0.14 -1.90 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.48 6.84 -51.93 -0.36 0.12 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.14 0.36 7.12 -51.93 -0.37 -0.01 16 39 H 0.40 2.28 8.60 -40.82 -0.35 1.93 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.59 7.60 -51.93 -0.39 1.19 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.38 9.90 6.06 -40.82 -0.25 9.65 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -37.01 397.11 -6.76 -43.77 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.91 Total: 6.98 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.97 Total: -4.09 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 2.07 Total: -60.97 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.01 -6.76 -43.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981374185.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.351 kcal (2) G-P(sol) polarization free energy of solvation -37.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds