Wall clock time and date at job start Tue Mar 31 2020 19:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46729 * 2 1 4 4 C 1.50692 * 109.47194 * 120.00017 * 2 1 3 5 5 N 1.31072 * 126.66245 * 300.16838 * 4 2 1 6 6 N 1.28845 * 107.98838 * 180.24844 * 5 4 2 7 7 N 1.28733 * 109.40056 * 359.75001 * 6 5 4 8 8 N 1.29021 * 108.80628 * 0.02562 * 7 6 5 9 9 C 1.46507 * 126.43711 * 179.97438 * 8 7 6 10 10 C 1.50690 * 109.47298 * 90.02266 * 9 8 7 11 11 O 1.21284 * 120.00098 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00050 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99637 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47378 * 324.99749 * 13 12 10 15 15 C 1.53002 * 109.46876 * 85.00417 * 13 12 10 16 16 C 1.53001 * 109.46637 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47486 * 299.99742 * 16 15 13 18 18 C 1.53002 * 109.46972 * 60.00463 * 17 16 15 19 19 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.47411 * 59.99834 * 18 17 16 21 21 C 1.36929 * 119.99833 * 84.99952 * 20 18 17 22 22 H 1.08000 * 120.00309 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99926 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99705 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00172 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46950 * 90.00335 * 25 23 21 27 27 H 1.48500 * 109.47263 * 210.00268 * 25 23 21 28 28 H 1.48497 * 109.47277 * 330.00569 * 25 23 21 29 29 C 1.52997 * 109.46817 * 299.99733 * 18 17 16 30 30 H 1.08997 * 109.46969 * 299.99526 * 1 2 3 31 31 H 1.09000 * 109.47178 * 59.99566 * 1 2 3 32 32 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46969 * 240.00474 * 2 1 3 34 34 H 1.09001 * 109.46841 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46969 * 299.99963 * 3 2 1 36 36 H 1.08997 * 109.47008 * 60.00498 * 3 2 1 37 37 H 1.09004 * 109.47055 * 330.02004 * 9 8 7 38 38 H 1.09003 * 109.46557 * 210.02957 * 9 8 7 39 39 H 0.96998 * 120.00021 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.47407 * 59.99957 * 15 13 12 41 41 H 1.08992 * 109.47063 * 299.99561 * 15 13 12 42 42 H 1.09001 * 109.47109 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.47086 * 60.00158 * 16 15 13 44 44 H 1.08996 * 109.47452 * 300.00003 * 17 16 15 45 45 H 1.09000 * 109.47054 * 180.02562 * 17 16 15 46 46 H 0.97000 * 119.99634 * 265.00306 * 20 18 17 47 47 H 0.97006 * 119.99630 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.47533 * 179.97438 * 29 18 17 49 49 H 1.08996 * 109.47853 * 300.00202 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7951 -0.3802 2.4764 6 7 2.4018 -1.2268 3.2349 7 7 3.0156 -2.0916 2.5050 8 7 2.8097 -1.8087 1.2632 9 6 3.3290 -2.5421 0.1060 10 6 2.3502 -3.6182 -0.2873 11 8 1.3199 -3.7585 0.3372 12 7 2.6191 -4.4241 -1.3335 13 6 1.6672 -5.4699 -1.7162 14 1 1.1923 -5.8738 -0.8221 15 6 0.5993 -4.8755 -2.6367 16 6 -0.3944 -5.9679 -3.0368 17 6 0.3463 -7.0872 -3.7712 18 6 1.4141 -7.6816 -2.8506 19 1 1.9416 -8.4793 -3.3737 20 7 0.7758 -8.2249 -1.6491 21 6 0.2653 -9.4954 -1.6600 22 1 0.3329 -10.0969 -2.5544 23 6 -0.3391 -10.0104 -0.5214 24 7 -0.4219 -9.2771 0.5685 25 14 -1.0360 -11.7434 -0.5364 26 1 0.0144 -12.7031 -0.1110 27 1 -2.1867 -11.8223 0.3990 28 1 -1.4898 -12.0825 -1.9091 29 6 2.4079 -6.5893 -2.4506 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 4.2853 -2.9973 0.3637 38 1 3.4671 -1.8539 -0.7280 39 1 3.4429 -4.3116 -1.8332 40 1 1.0742 -4.4717 -3.5308 41 1 0.0719 -4.0779 -2.1137 42 1 -1.1555 -5.5444 -3.6922 43 1 -0.8694 -6.3721 -2.1428 44 1 0.8212 -6.6831 -4.6651 45 1 -0.3618 -7.8652 -4.0565 46 1 0.7147 -7.6844 -0.8459 47 1 -0.8439 -9.6371 1.3643 48 1 3.1685 -7.0125 -1.7944 49 1 2.8829 -6.1850 -3.3445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981374185.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:41 Heat of formation + Delta-G solvation = 49.073000 kcal Electronic energy + Delta-G solvation = -30096.213304 eV Core-core repulsion = 26094.587469 eV Total energy + Delta-G solvation = -4001.625834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.29793 -41.28121 -39.53508 -37.17424 -36.49389 -36.05780 -34.80793 -32.75922 -32.55806 -31.28436 -30.02624 -29.12804 -28.11277 -25.71880 -25.48981 -24.75665 -23.31809 -23.19112 -21.93654 -21.51516 -20.20675 -19.28533 -18.92981 -18.77347 -17.43398 -17.17640 -16.76713 -16.55383 -16.40880 -15.81707 -15.55546 -15.35508 -15.28967 -15.15153 -14.77934 -14.44774 -14.19618 -13.95699 -13.64751 -13.45195 -13.42243 -13.17811 -13.09864 -12.87518 -12.84233 -12.69705 -12.60276 -12.50804 -12.30518 -12.28245 -12.17581 -12.16587 -11.89837 -11.81470 -11.59596 -11.50523 -11.23893 -11.11856 -10.86456 -10.80736 -10.12442 -8.97224 -7.93313 -5.20636 0.08916 0.86192 1.13099 1.35420 1.43670 1.45288 1.53597 2.00208 2.55608 2.88189 3.15637 3.39321 3.42999 3.61738 3.77471 3.89587 3.92664 4.01665 4.05422 4.06836 4.18927 4.19911 4.36942 4.37615 4.46131 4.58548 4.64551 4.69974 4.76809 4.77090 4.82615 4.84021 4.91578 4.95367 5.01534 5.11865 5.15127 5.19759 5.27784 5.30758 5.37209 5.40779 5.44807 5.51592 5.63524 5.69153 6.28632 6.41042 7.12864 7.34252 7.47866 8.15504 8.33866 9.30033 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002807 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.051614 B = 9974.166360 C =10752.977927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.009 4.009 3 C -0.138 4.138 4 C 0.208 3.792 5 N -0.332 5.332 6 N -0.110 5.110 7 N -0.107 5.107 8 N -0.292 5.292 9 C 0.089 3.911 10 C 0.493 3.507 11 O -0.578 6.578 12 N -0.691 5.691 13 C 0.153 3.847 14 H 0.036 0.964 15 C -0.106 4.106 16 C -0.109 4.109 17 C -0.126 4.126 18 C 0.165 3.835 19 H 0.054 0.946 20 N -0.736 5.736 21 C -0.228 4.228 22 H 0.079 0.921 23 C -0.083 4.083 24 N -0.974 5.974 25 Si 0.968 3.032 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.266 1.266 29 C -0.114 4.114 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.032 0.968 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.174 0.826 38 H 0.201 0.799 39 H 0.426 0.574 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.020 0.980 44 H 0.091 0.909 45 H 0.035 0.965 46 H 0.369 0.631 47 H 0.246 0.754 48 H 0.060 0.940 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 22.479 -14.825 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 C -0.196 4.196 4 C -0.070 4.070 5 N -0.180 5.180 6 N -0.104 5.104 7 N -0.093 5.093 8 N -0.093 5.093 9 C -0.034 4.034 10 C 0.277 3.723 11 O -0.457 6.457 12 N -0.344 5.344 13 C 0.048 3.952 14 H 0.054 0.946 15 C -0.145 4.145 16 C -0.147 4.147 17 C -0.166 4.166 18 C 0.056 3.944 19 H 0.072 0.928 20 N -0.377 5.377 21 C -0.361 4.361 22 H 0.097 0.903 23 C -0.275 4.275 24 N -0.626 5.626 25 Si 0.797 3.203 26 H -0.215 1.215 27 H -0.231 1.231 28 H -0.191 1.191 29 C -0.153 4.153 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.052 0.948 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.192 0.808 38 H 0.218 0.782 39 H 0.266 0.734 40 H 0.121 0.879 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.109 0.891 45 H 0.054 0.946 46 H 0.202 0.798 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.924 22.016 -13.032 28.226 hybrid contribution -0.785 -1.516 0.403 1.754 sum 11.138 20.500 -12.629 26.529 Atomic orbital electron populations 1.21833 0.92598 1.01597 1.04160 1.20144 0.97063 0.97198 0.88685 1.21849 1.01779 0.91814 1.04162 1.26866 0.93314 0.88462 0.98344 1.74834 1.20529 1.22708 0.99957 1.78559 1.08087 0.99968 1.23767 1.78793 1.20918 1.20732 0.88862 1.48139 1.34370 1.20007 1.06758 1.22578 0.98502 0.95644 0.86704 1.20983 0.87166 0.83530 0.80607 1.90890 1.29221 1.71521 1.54069 1.45681 1.24504 1.32893 1.31323 1.20770 0.90056 0.87303 0.97103 0.94569 1.21729 0.96052 0.97074 0.99625 1.21304 0.98078 0.96004 0.99347 1.22057 0.98733 0.97129 0.98664 1.20546 0.92222 0.93983 0.87635 0.92839 1.42777 1.69274 1.13966 1.11646 1.19652 1.27929 0.91694 0.96776 0.90300 1.25541 1.03693 1.02067 0.96192 1.69859 1.51638 1.38218 1.02874 0.85212 0.77240 0.80461 0.77337 1.21532 1.23074 1.19092 1.21965 0.97499 0.94324 1.01491 0.92698 0.87701 0.94831 0.85567 0.91322 0.87964 0.92859 0.80811 0.78236 0.73446 0.87921 0.93769 0.91394 0.96055 0.89080 0.94604 0.79830 0.94569 0.92152 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.18 71.98 0.66 -1.62 16 2 C -0.01 -0.12 3.26 -11.54 -0.04 -0.16 16 3 C -0.14 -1.14 9.18 71.98 0.66 -0.48 16 4 C 0.21 4.76 6.64 138.13 0.92 5.68 16 5 N -0.33 -10.29 12.36 -50.46 -0.62 -10.91 16 6 N -0.11 -3.90 13.43 37.01 0.50 -3.40 16 7 N -0.11 -3.41 13.29 37.02 0.49 -2.91 16 8 N -0.29 -6.68 2.83 -341.98 -0.97 -7.65 16 9 C 0.09 1.00 6.57 85.63 0.56 1.57 16 10 C 0.49 10.74 7.86 87.65 0.69 11.43 16 11 O -0.58 -21.39 16.09 -3.04 -0.05 -21.44 16 12 N -0.69 -11.57 5.08 -442.53 -2.25 -13.82 16 13 C 0.15 4.11 2.28 44.99 0.10 4.21 16 14 H 0.04 1.49 5.94 -2.39 -0.01 1.48 16 15 C -0.11 -2.62 5.50 30.60 0.17 -2.45 16 16 C -0.11 -3.42 5.76 30.59 0.18 -3.24 16 17 C -0.13 -3.79 5.61 30.59 0.17 -3.61 16 18 C 0.16 5.64 3.10 44.99 0.14 5.78 16 19 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 20 N -0.74 -35.86 4.28 -322.93 -1.38 -37.24 16 21 C -0.23 -12.53 9.93 84.04 0.83 -11.70 16 22 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 23 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 24 N -0.97 -62.61 13.06 21.65 0.28 -62.33 16 25 Si 0.97 47.37 29.55 68.60 2.03 49.40 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 C -0.11 -2.80 5.08 30.60 0.16 -2.64 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.13 0.67 6.84 -2.39 -0.02 0.65 16 34 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.17 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.20 -0.33 7.12 -2.39 -0.02 -0.34 16 39 H 0.43 2.42 8.60 -92.71 -0.80 1.62 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.02 0.89 7.60 -2.38 -0.02 0.88 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 46 H 0.37 20.24 6.06 -92.71 -0.56 19.68 16 47 H 0.25 15.55 8.31 -92.70 -0.77 14.78 16 48 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -93.79 397.11 3.31 -90.48 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.39 Total: 21.49 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.67 Total: -1.67 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -3.95 Total: -138.26 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -93.79 3.31 -90.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981374185.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.554 kcal (2) G-P(sol) polarization free energy of solvation -93.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds