Wall clock time and date at job start Tue Mar 31 2020 19:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 C 1.50706 * 109.47457 * 120.00051 * 2 1 3 5 5 N 1.31065 * 126.66061 * 300.04219 * 4 2 1 6 6 N 1.28840 * 107.99425 * 179.97438 * 5 4 2 7 7 N 1.28746 * 109.39311 * 359.73695 * 6 5 4 8 8 N 1.29011 * 108.80567 * 0.43446 * 7 6 5 9 9 C 1.46500 * 126.43587 * 179.83564 * 8 7 6 10 10 C 1.50706 * 109.47299 * 269.69162 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47194 * 34.71875 * 13 12 10 15 15 C 1.52997 * 109.46691 * 274.72265 * 13 12 10 16 16 C 1.53004 * 109.47406 * 299.99403 * 15 13 12 17 17 C 1.52993 * 109.47226 * 300.00825 * 16 15 13 18 18 C 1.52997 * 109.47602 * 59.99295 * 17 16 15 19 19 H 1.09002 * 109.46832 * 60.00019 * 18 17 16 20 20 N 1.46504 * 109.47556 * 180.02562 * 18 17 16 21 21 C 1.36934 * 119.99487 * 275.00285 * 20 18 17 22 22 H 1.07999 * 120.00483 * 359.97438 * 21 20 18 23 23 C 1.38821 * 119.99361 * 179.97438 * 21 20 18 24 24 N 1.31614 * 119.99930 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99771 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47395 * 59.99908 * 25 23 21 27 27 H 1.48496 * 109.47324 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47414 * 300.00223 * 25 23 21 29 29 C 1.52993 * 109.47100 * 154.71955 * 13 12 10 30 30 H 1.09001 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46855 * 299.99881 * 1 2 3 32 32 H 1.08996 * 109.47428 * 59.99486 * 1 2 3 33 33 H 1.09004 * 109.46855 * 240.00118 * 2 1 3 34 34 H 1.09001 * 109.47628 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46948 * 300.00226 * 3 2 1 36 36 H 1.09004 * 109.47101 * 60.00269 * 3 2 1 37 37 H 1.09004 * 109.47418 * 149.69313 * 9 8 7 38 38 H 1.08998 * 109.47468 * 29.69240 * 9 8 7 39 39 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 40 40 H 1.08995 * 109.47574 * 60.00208 * 15 13 12 41 41 H 1.09002 * 109.46832 * 179.97438 * 15 13 12 42 42 H 1.08996 * 109.47149 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.46655 * 60.00467 * 16 15 13 44 44 H 1.09002 * 109.47012 * 299.99424 * 17 16 15 45 45 H 1.08999 * 109.47163 * 179.97438 * 17 16 15 46 46 H 0.96993 * 119.99996 * 94.99961 * 20 18 17 47 47 H 0.97005 * 119.99340 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.47012 * 179.97438 * 29 13 12 49 49 H 1.08996 * 109.47599 * 300.00068 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7970 -0.3789 2.4765 6 7 2.3981 -1.2293 3.2350 7 7 3.0064 -2.0981 2.5050 8 7 2.8095 -1.8089 1.2633 9 6 3.3289 -2.5421 0.1062 10 6 4.6670 -1.9730 -0.2899 11 8 5.1399 -1.0458 0.3328 12 7 5.3376 -2.4935 -1.3366 13 6 6.6386 -1.9406 -1.7212 14 1 7.1757 -1.6205 -0.8284 15 6 6.4292 -0.7412 -2.6477 16 6 5.6753 -1.1905 -3.9011 17 6 6.4895 -2.2616 -4.6295 18 6 6.6990 -3.4610 -3.7029 19 1 5.7310 -3.8724 -3.4168 20 7 7.4792 -4.4864 -4.4002 21 6 6.8495 -5.3910 -5.2128 22 1 5.7778 -5.3487 -5.3395 23 6 7.5888 -6.3623 -5.8739 24 7 8.8949 -6.4134 -5.7199 25 14 6.7299 -7.5967 -6.9819 26 1 6.0264 -6.8765 -8.0736 27 1 7.7348 -8.5213 -7.5655 28 1 5.7454 -8.3742 -6.1873 29 6 7.4528 -3.0117 -2.4495 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.6326 -2.4467 -0.7270 38 1 3.4440 -3.5947 0.3647 39 1 4.9609 -3.2372 -1.8326 40 1 5.8492 0.0219 -2.1289 41 1 7.3971 -0.3295 -2.9336 42 1 5.5265 -0.3361 -4.5614 43 1 4.7074 -1.6019 -3.6149 44 1 7.4575 -1.8502 -4.9156 45 1 5.9523 -2.5820 -5.5221 46 1 8.4416 -4.5246 -4.2862 47 1 9.4114 -7.0924 -6.1816 48 1 8.4206 -2.6002 -2.7361 49 1 7.6020 -3.8662 -1.7895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981374186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:47 Heat of formation + Delta-G solvation = 74.794092 kcal Electronic energy + Delta-G solvation = -29963.501830 eV Core-core repulsion = 25962.991346 eV Total energy + Delta-G solvation = -4000.510484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.38834 -40.48362 -38.33395 -36.50704 -35.60227 -34.69781 -33.34654 -31.72558 -31.30014 -30.42732 -28.77940 -27.95880 -27.62273 -24.68024 -23.99663 -23.67848 -22.32143 -21.71802 -21.15854 -20.82706 -19.10619 -18.33981 -17.96618 -17.23034 -16.57476 -16.21646 -15.81263 -15.40884 -15.34848 -14.93855 -14.56102 -14.26073 -14.14249 -13.66508 -13.60947 -13.59087 -13.17653 -13.09469 -12.62053 -12.60685 -12.38457 -12.20645 -12.11814 -12.01492 -11.91612 -11.75931 -11.58802 -11.54573 -11.17884 -11.11957 -10.98259 -10.94201 -10.55552 -10.35656 -10.33229 -10.30168 -10.08591 -9.90032 -9.67083 -9.25167 -8.98860 -7.09586 -5.88405 -3.18231 0.97549 1.55181 2.08519 2.11125 2.81348 3.34297 3.39069 3.41013 3.55168 3.82133 4.09135 4.16142 4.37277 4.46074 4.54212 4.66213 4.81181 4.84344 4.90560 4.99114 5.17805 5.21968 5.32927 5.33427 5.41209 5.41414 5.46240 5.51110 5.52832 5.57257 5.67271 5.76587 5.80246 5.83488 5.88014 5.88674 5.91636 6.02361 6.11527 6.29424 6.37646 6.42469 6.55247 6.77636 6.92926 7.14512 7.55945 7.77697 8.29568 8.44020 9.40946 9.97483 10.31414 11.33867 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002536 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.150831 B =11039.180074 C =11220.857410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.203 3.797 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.085 5.085 8 N -0.293 5.293 9 C 0.088 3.912 10 C 0.501 3.499 11 O -0.524 6.524 12 N -0.705 5.705 13 C 0.153 3.847 14 H 0.086 0.914 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.182 3.818 19 H 0.040 0.960 20 N -0.724 5.724 21 C -0.244 4.244 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.135 4.135 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.407 0.593 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.384 0.616 47 H 0.257 0.743 48 H 0.079 0.921 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 12.631 7.588 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.076 4.076 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.070 5.070 8 N -0.093 5.093 9 C -0.038 4.038 10 C 0.283 3.717 11 O -0.400 6.400 12 N -0.359 5.359 13 C 0.049 3.951 14 H 0.104 0.896 15 C -0.166 4.166 16 C -0.153 4.153 17 C -0.179 4.179 18 C 0.071 3.929 19 H 0.058 0.942 20 N -0.365 5.365 21 C -0.375 4.375 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.173 4.173 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.244 0.756 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.218 0.782 47 H 0.067 0.933 48 H 0.098 0.902 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.767 12.978 9.373 21.114 hybrid contribution -0.078 -1.270 -1.950 2.329 sum -13.845 11.708 7.422 19.592 Atomic orbital electron populations 1.21854 0.91914 1.02735 1.03722 1.19799 0.97333 0.96598 0.89549 1.21824 1.01963 0.93013 1.03378 1.26077 0.94769 0.88732 0.97978 1.74938 1.20668 1.21024 0.98348 1.78606 1.06926 0.98870 1.22413 1.78903 1.19098 1.21813 0.87214 1.47846 1.33810 1.20820 1.06842 1.22050 0.96368 0.98957 0.86390 1.20220 0.86222 0.84048 0.81215 1.90809 1.68217 1.28167 1.52792 1.46101 1.21703 1.36837 1.31218 1.21051 0.82366 0.94001 0.97725 0.89590 1.21902 1.01481 0.96941 0.96271 1.21505 0.98743 0.98864 0.96151 1.22310 0.99664 0.96167 0.99738 1.20133 0.94133 0.88865 0.89733 0.94172 1.42407 1.06754 1.33133 1.54165 1.19141 0.91861 1.06801 1.19693 0.91277 1.24752 0.95527 0.99605 1.00834 1.69643 1.04565 1.36818 1.46817 0.86296 0.78261 0.81150 0.80605 1.21250 1.21667 1.21249 1.22156 0.99420 0.97745 0.98026 0.92343 0.90951 0.90710 0.89083 0.91874 0.90867 0.91090 0.84248 0.83744 0.75606 0.92137 0.90859 0.92691 0.92743 0.92461 0.91954 0.78194 0.93344 0.90246 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.18 37.15 0.34 -0.46 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.06 9.17 37.16 0.34 -0.71 16 4 C 0.20 2.21 6.64 -155.44 -1.03 1.17 16 5 N -0.30 -4.15 12.36 32.70 0.40 -3.75 16 6 N -0.07 -1.15 13.43 60.35 0.81 -0.34 16 7 N -0.08 -1.20 13.29 60.35 0.80 -0.40 16 8 N -0.29 -3.24 2.83 -59.44 -0.17 -3.40 16 9 C 0.09 0.63 6.57 -5.19 -0.03 0.60 16 10 C 0.50 5.14 7.87 -10.98 -0.09 5.05 16 11 O -0.52 -7.67 16.09 5.56 0.09 -7.58 16 12 N -0.71 -6.74 4.23 -53.81 -0.23 -6.97 16 13 C 0.15 1.75 2.79 -67.93 -0.19 1.56 16 14 H 0.09 1.08 7.57 -51.93 -0.39 0.69 16 15 C -0.13 -1.40 5.61 -26.73 -0.15 -1.55 16 16 C -0.11 -1.29 5.77 -26.73 -0.15 -1.45 16 17 C -0.14 -2.07 5.50 -26.74 -0.15 -2.21 16 18 C 0.18 2.94 2.60 -67.93 -0.18 2.76 16 19 H 0.04 0.62 6.44 -51.93 -0.33 0.29 16 20 N -0.72 -16.16 5.12 -53.42 -0.27 -16.43 16 21 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 22 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 25 Si 0.91 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 29 C -0.13 -1.83 5.08 -26.73 -0.14 -1.96 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.46 6.85 -51.93 -0.36 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.14 0.43 7.13 -51.93 -0.37 0.06 16 38 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.41 3.31 6.87 -40.82 -0.28 3.03 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.55 7.60 -51.93 -0.39 0.16 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.38 9.35 7.80 -40.82 -0.32 9.03 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -34.04 397.11 -6.76 -40.79 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.91 Total: 6.30 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.97 Total: -4.29 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 2.07 Total: -57.26 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.09 Total: -7.58 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.04 -6.76 -40.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981374186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.587 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds