Wall clock time and date at job start Tue Mar 31 2020 19:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 C 1.50706 * 109.47457 * 120.00051 * 2 1 3 5 5 N 1.31065 * 126.66061 * 300.04219 * 4 2 1 6 6 N 1.28840 * 107.99425 * 179.97438 * 5 4 2 7 7 N 1.28746 * 109.39311 * 359.73695 * 6 5 4 8 8 N 1.29011 * 108.80567 * 0.43446 * 7 6 5 9 9 C 1.46500 * 126.43587 * 179.83564 * 8 7 6 10 10 C 1.50706 * 109.47299 * 269.69162 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47194 * 34.71875 * 13 12 10 15 15 C 1.52997 * 109.46691 * 274.72265 * 13 12 10 16 16 C 1.53004 * 109.47406 * 299.99403 * 15 13 12 17 17 C 1.52993 * 109.47226 * 300.00825 * 16 15 13 18 18 C 1.52997 * 109.47602 * 59.99295 * 17 16 15 19 19 H 1.09002 * 109.46832 * 60.00019 * 18 17 16 20 20 N 1.46504 * 109.47556 * 180.02562 * 18 17 16 21 21 C 1.36934 * 119.99487 * 275.00285 * 20 18 17 22 22 H 1.07999 * 120.00483 * 359.97438 * 21 20 18 23 23 C 1.38821 * 119.99361 * 179.97438 * 21 20 18 24 24 N 1.31614 * 119.99930 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99771 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47395 * 59.99908 * 25 23 21 27 27 H 1.48496 * 109.47324 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47414 * 300.00223 * 25 23 21 29 29 C 1.52993 * 109.47100 * 154.71955 * 13 12 10 30 30 H 1.09001 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46855 * 299.99881 * 1 2 3 32 32 H 1.08996 * 109.47428 * 59.99486 * 1 2 3 33 33 H 1.09004 * 109.46855 * 240.00118 * 2 1 3 34 34 H 1.09001 * 109.47628 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46948 * 300.00226 * 3 2 1 36 36 H 1.09004 * 109.47101 * 60.00269 * 3 2 1 37 37 H 1.09004 * 109.47418 * 149.69313 * 9 8 7 38 38 H 1.08998 * 109.47468 * 29.69240 * 9 8 7 39 39 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 40 40 H 1.08995 * 109.47574 * 60.00208 * 15 13 12 41 41 H 1.09002 * 109.46832 * 179.97438 * 15 13 12 42 42 H 1.08996 * 109.47149 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.46655 * 60.00467 * 16 15 13 44 44 H 1.09002 * 109.47012 * 299.99424 * 17 16 15 45 45 H 1.08999 * 109.47163 * 179.97438 * 17 16 15 46 46 H 0.96993 * 119.99996 * 94.99961 * 20 18 17 47 47 H 0.97005 * 119.99340 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.47012 * 179.97438 * 29 13 12 49 49 H 1.08996 * 109.47599 * 300.00068 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7970 -0.3789 2.4765 6 7 2.3981 -1.2293 3.2350 7 7 3.0064 -2.0981 2.5050 8 7 2.8095 -1.8089 1.2633 9 6 3.3289 -2.5421 0.1062 10 6 4.6670 -1.9730 -0.2899 11 8 5.1399 -1.0458 0.3328 12 7 5.3376 -2.4935 -1.3366 13 6 6.6386 -1.9406 -1.7212 14 1 7.1757 -1.6205 -0.8284 15 6 6.4292 -0.7412 -2.6477 16 6 5.6753 -1.1905 -3.9011 17 6 6.4895 -2.2616 -4.6295 18 6 6.6990 -3.4610 -3.7029 19 1 5.7310 -3.8724 -3.4168 20 7 7.4792 -4.4864 -4.4002 21 6 6.8495 -5.3910 -5.2128 22 1 5.7778 -5.3487 -5.3395 23 6 7.5888 -6.3623 -5.8739 24 7 8.8949 -6.4134 -5.7199 25 14 6.7299 -7.5967 -6.9819 26 1 6.0264 -6.8765 -8.0736 27 1 7.7348 -8.5213 -7.5655 28 1 5.7454 -8.3742 -6.1873 29 6 7.4528 -3.0117 -2.4495 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.6326 -2.4467 -0.7270 38 1 3.4440 -3.5947 0.3647 39 1 4.9609 -3.2372 -1.8326 40 1 5.8492 0.0219 -2.1289 41 1 7.3971 -0.3295 -2.9336 42 1 5.5265 -0.3361 -4.5614 43 1 4.7074 -1.6019 -3.6149 44 1 7.4575 -1.8502 -4.9156 45 1 5.9523 -2.5820 -5.5221 46 1 8.4416 -4.5246 -4.2862 47 1 9.4114 -7.0924 -6.1816 48 1 8.4206 -2.6002 -2.7361 49 1 7.6020 -3.8662 -1.7895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981374186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:46 Heat of formation + Delta-G solvation = 51.086017 kcal Electronic energy + Delta-G solvation = -29964.529889 eV Core-core repulsion = 25962.991346 eV Total energy + Delta-G solvation = -4001.538543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.28915 -41.40725 -39.41796 -37.15299 -36.48373 -36.10610 -34.56259 -32.93089 -32.55027 -31.39699 -29.84721 -29.23331 -28.09863 -25.66801 -25.47166 -24.71363 -23.35440 -22.67062 -22.29285 -21.54092 -20.18469 -19.35346 -18.96119 -18.65216 -17.51845 -17.02150 -16.79255 -16.49966 -16.31607 -16.07631 -15.55614 -15.37604 -15.09976 -14.92712 -14.83055 -14.42725 -14.18478 -13.98678 -13.71294 -13.51960 -13.18955 -13.12338 -13.08094 -13.02085 -12.86180 -12.73720 -12.67695 -12.47784 -12.28627 -12.26977 -12.24114 -12.05882 -11.91944 -11.88098 -11.57017 -11.44258 -11.21077 -10.99010 -10.94481 -10.80266 -10.15229 -8.95227 -7.89602 -5.17146 0.10734 0.83750 1.13926 1.33287 1.51357 1.52847 1.58794 2.02673 2.59878 2.88952 3.16267 3.39844 3.44804 3.61698 3.69672 3.89059 3.91125 3.94556 4.03275 4.06979 4.20484 4.31812 4.32297 4.37265 4.39125 4.57758 4.65087 4.68924 4.73784 4.79209 4.82475 4.85540 4.91592 4.93689 4.96545 5.13758 5.14941 5.20462 5.26303 5.30228 5.36636 5.39854 5.43228 5.55387 5.58612 5.70112 6.32247 6.35452 7.00459 7.38901 7.49323 8.16790 8.37081 9.33937 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002536 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.150831 B =11039.180074 C =11220.857410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.012 4.012 3 C -0.141 4.141 4 C 0.210 3.790 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.105 5.105 8 N -0.290 5.290 9 C 0.083 3.917 10 C 0.505 3.495 11 O -0.571 6.571 12 N -0.696 5.696 13 C 0.163 3.837 14 H 0.075 0.925 15 C -0.121 4.121 16 C -0.102 4.102 17 C -0.130 4.130 18 C 0.177 3.823 19 H 0.057 0.943 20 N -0.739 5.739 21 C -0.230 4.230 22 H 0.083 0.917 23 C -0.079 4.079 24 N -0.973 5.973 25 Si 0.966 3.034 26 H -0.279 1.279 27 H -0.304 1.304 28 H -0.276 1.276 29 C -0.123 4.123 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.041 0.959 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.191 0.809 38 H 0.170 0.830 39 H 0.417 0.583 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.248 0.752 48 H 0.072 0.928 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.870 13.075 6.337 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.102 5.102 7 N -0.091 5.091 8 N -0.091 5.091 9 C -0.041 4.041 10 C 0.290 3.710 11 O -0.449 6.449 12 N -0.349 5.349 13 C 0.058 3.942 14 H 0.094 0.906 15 C -0.160 4.160 16 C -0.140 4.140 17 C -0.170 4.170 18 C 0.069 3.931 19 H 0.075 0.925 20 N -0.378 5.378 21 C -0.362 4.362 22 H 0.101 0.899 23 C -0.271 4.271 24 N -0.624 5.624 25 Si 0.796 3.204 26 H -0.205 1.205 27 H -0.231 1.231 28 H -0.202 1.202 29 C -0.162 4.162 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.140 0.860 34 H 0.060 0.940 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.208 0.792 38 H 0.188 0.812 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.201 0.799 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.544 13.435 8.122 22.807 hybrid contribution 0.770 -1.323 -1.560 2.186 sum -15.773 12.112 6.561 20.941 Atomic orbital electron populations 1.21853 0.90552 1.03267 1.04158 1.20127 0.98332 0.96104 0.88746 1.21812 1.00511 0.93533 1.04075 1.26793 0.93545 0.88214 0.98272 1.74852 1.21605 1.21564 0.99809 1.78564 1.08135 0.99804 1.23658 1.78797 1.19494 1.22176 0.88675 1.48083 1.33328 1.20968 1.06709 1.22539 0.95476 0.99452 0.86656 1.20641 0.86933 0.83149 0.80304 1.90810 1.69570 1.30401 1.54165 1.45943 1.20849 1.36891 1.31226 1.20801 0.82977 0.93379 0.97090 0.90641 1.21840 1.01587 0.96598 0.95932 1.21411 0.98804 0.98000 0.95816 1.22135 0.99355 0.96550 0.99004 1.20410 0.94307 0.88031 0.90321 0.92482 1.42677 1.06529 1.34207 1.54400 1.19598 0.92465 1.06019 1.18143 0.89942 1.25507 0.96121 1.02169 1.03303 1.69808 1.06047 1.37811 1.48707 0.85313 0.77018 0.78952 0.79099 1.20501 1.23136 1.20159 1.21982 0.99299 0.98058 0.96833 0.91775 0.92597 0.88213 0.85987 0.94014 0.88095 0.92529 0.79184 0.81241 0.74382 0.91572 0.91044 0.91401 0.90617 0.94078 0.93751 0.79889 0.94359 0.90981 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.18 71.98 0.66 -0.45 16 2 C -0.01 -0.13 3.26 -11.54 -0.04 -0.16 16 3 C -0.14 -1.76 9.17 71.98 0.66 -1.10 16 4 C 0.21 4.20 6.64 138.14 0.92 5.12 16 5 N -0.33 -9.04 12.36 -50.45 -0.62 -9.67 16 6 N -0.11 -3.37 13.43 37.01 0.50 -2.87 16 7 N -0.11 -2.93 13.29 37.02 0.49 -2.44 16 8 N -0.29 -5.80 2.83 -341.97 -0.97 -6.77 16 9 C 0.08 0.86 6.57 85.64 0.56 1.42 16 10 C 0.51 8.87 7.87 87.66 0.69 9.56 16 11 O -0.57 -15.83 16.09 -3.03 -0.05 -15.88 16 12 N -0.70 -11.04 4.23 -442.54 -1.87 -12.91 16 13 C 0.16 3.39 2.79 44.99 0.13 3.52 16 14 H 0.08 1.82 7.57 -2.39 -0.02 1.80 16 15 C -0.12 -2.34 5.61 30.59 0.17 -2.17 16 16 C -0.10 -1.94 5.77 30.59 0.18 -1.77 16 17 C -0.13 -3.63 5.50 30.59 0.17 -3.47 16 18 C 0.18 5.42 2.60 44.99 0.12 5.54 16 19 H 0.06 1.57 6.44 -2.39 -0.02 1.56 16 20 N -0.74 -32.65 5.12 -322.92 -1.65 -34.30 16 21 C -0.23 -11.42 9.93 84.04 0.83 -10.58 16 22 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 23 C -0.08 -4.24 5.50 84.87 0.47 -3.77 16 24 N -0.97 -56.91 13.06 21.65 0.28 -56.63 16 25 Si 0.97 43.16 29.55 68.60 2.03 45.18 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 28 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 29 C -0.12 -3.20 5.08 30.59 0.16 -3.04 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.12 0.59 6.85 -2.39 -0.02 0.57 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.19 0.01 7.13 -2.39 -0.02 -0.01 16 38 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.42 5.04 6.87 -92.70 -0.64 4.40 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.15 7.60 -2.39 -0.02 1.13 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.37 18.29 7.80 -92.71 -0.72 17.56 16 47 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 48 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -77.71 397.11 3.41 -74.30 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.39 Total: 23.33 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.67 Total: -1.35 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -3.85 Total: -125.58 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.05 Total: -15.88 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -77.71 3.41 -74.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981374186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.389 kcal (2) G-P(sol) polarization free energy of solvation -77.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds