Wall clock time and date at job start Tue Mar 31 2020 19:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99898 * 2 1 4 4 C 1.53003 * 109.47245 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47586 * 179.97438 * 4 3 2 6 6 C 1.34255 * 125.75362 * 124.99929 * 5 4 3 7 7 C 1.38045 * 107.41603 * 180.02562 * 6 5 4 8 8 C 1.47426 * 126.41391 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00092 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00093 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00083 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47374 * 324.99398 * 11 10 8 13 13 C 1.53000 * 109.47631 * 84.99376 * 11 10 8 14 14 C 1.52997 * 109.47060 * 59.99933 * 13 11 10 15 15 C 1.52999 * 109.47317 * 59.99960 * 14 13 11 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 18 18 N 1.46500 * 109.47094 * 179.97438 * 16 15 14 19 19 C 1.36943 * 120.00134 * 84.99505 * 18 16 15 20 20 H 1.08007 * 119.99758 * 0.02562 * 19 18 16 21 21 C 1.38802 * 120.00199 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00016 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00051 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47500 * 89.99631 * 23 21 19 25 25 H 1.48500 * 109.46957 * 209.99741 * 23 21 19 26 26 H 1.48499 * 109.46983 * 329.99436 * 23 21 19 27 27 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 28 28 C 1.41290 * 107.17213 * 0.24105 * 7 6 5 29 29 N 1.30445 * 108.02158 * 359.59319 * 28 7 6 30 30 H 1.08999 * 109.47212 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47252 * 299.99904 * 1 2 3 32 32 H 1.08997 * 109.47481 * 60.00099 * 1 2 3 33 33 H 1.08994 * 109.47415 * 60.00200 * 3 2 1 34 34 H 1.08999 * 109.47122 * 299.99683 * 3 2 1 35 35 H 1.09007 * 109.46465 * 59.99875 * 4 3 2 36 36 H 1.09003 * 109.47422 * 300.00361 * 4 3 2 37 37 H 1.08001 * 126.29417 * 0.02566 * 6 5 4 38 38 H 0.97000 * 119.99750 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47398 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.47194 * 300.00282 * 13 11 10 41 41 H 1.08996 * 109.47853 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.47153 * 300.00319 * 14 13 11 43 43 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 44 44 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 45 45 H 0.97004 * 120.00223 * 264.99822 * 18 16 15 46 46 H 0.97001 * 119.99795 * 180.02562 * 22 21 19 47 47 H 1.08993 * 109.47194 * 179.97438 * 27 16 15 48 48 H 1.09002 * 109.46695 * 59.99734 * 27 16 15 49 49 H 1.07998 * 125.99016 * 179.73563 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9860 0.8926 7 6 5.3261 4.2843 0.5364 8 6 6.2609 5.1863 1.2336 9 8 6.8493 4.8030 2.2264 10 7 6.4625 6.4362 0.7713 11 6 7.3917 7.3323 1.4637 12 1 7.3439 7.1468 2.5368 13 6 8.8152 7.0757 0.9649 14 6 8.8824 7.3361 -0.5413 15 6 8.4967 8.7892 -0.8254 16 6 7.0733 9.0459 -0.3264 17 1 6.3819 8.3791 -0.8417 18 7 6.7041 10.4374 -0.5979 19 6 6.1973 10.7851 -1.8217 20 1 6.0694 10.0333 -2.5866 21 6 5.8471 12.1034 -2.0787 22 7 5.3596 12.4375 -3.2548 23 14 6.0677 13.4034 -0.7556 24 1 7.4220 14.0015 -0.8700 25 1 5.0423 14.4637 -0.9276 26 1 5.9140 12.7786 0.5828 27 6 7.0060 8.7855 1.1797 28 6 4.5702 4.5889 -0.6177 29 7 3.8688 3.5345 -0.9306 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8573 0.6436 -0.8892 36 1 3.8568 0.6439 0.8908 37 1 5.4239 2.4425 1.7345 38 1 5.9928 6.7421 -0.0204 39 1 9.5066 7.7422 1.4804 40 1 9.0900 6.0405 1.1672 41 1 9.8963 7.1529 -0.8969 42 1 8.1910 6.6693 -1.0566 43 1 8.5442 8.9746 -1.8985 44 1 9.1881 9.4560 -0.3101 45 1 6.8187 11.1125 0.0892 46 1 5.1152 13.3588 -3.4345 47 1 5.9921 8.9688 1.5352 48 1 7.6974 9.4523 1.6949 49 1 4.5743 5.5291 -1.1492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981491414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:59 Heat of formation + Delta-G solvation = 0.898932 kcal Electronic energy + Delta-G solvation = -28904.579651 eV Core-core repulsion = 24868.572081 eV Total energy + Delta-G solvation = -4036.007570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.63276 -39.80022 -38.47847 -37.77648 -34.57971 -34.30590 -32.96733 -31.35897 -30.73602 -30.15900 -29.06472 -28.25501 -26.76634 -24.08764 -23.57110 -23.13913 -22.07098 -21.08767 -20.84073 -20.36728 -18.88356 -18.24891 -17.57727 -17.02330 -16.78671 -15.95770 -15.86047 -15.47355 -15.36975 -15.01344 -14.77261 -14.49812 -14.36437 -13.93347 -13.75996 -13.69626 -13.49763 -13.06410 -12.78581 -12.65036 -12.52866 -12.23411 -12.16208 -11.91362 -11.86532 -11.77886 -11.25082 -11.20846 -10.99264 -10.89002 -10.40460 -10.27088 -10.23969 -10.07613 -9.87786 -9.79830 -9.69107 -9.58116 -9.05630 -8.91459 -8.72804 -7.28376 -5.78479 -3.14090 1.30932 1.85980 2.02443 3.24261 3.36421 3.36934 3.39660 3.44906 3.48907 4.10517 4.35451 4.49999 4.55903 4.57884 4.69350 4.82904 4.84399 4.88131 4.99555 5.05626 5.07699 5.12704 5.13867 5.17709 5.29470 5.46019 5.48930 5.54211 5.63699 5.64992 5.80452 5.91152 5.99538 6.05242 6.16160 6.20171 6.27248 6.42631 6.42996 6.45140 6.55193 6.65891 6.68905 6.87061 7.00951 7.27584 7.69312 7.97250 8.37854 8.40570 9.19068 9.91870 10.11426 11.39728 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.002401 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.641224 B =11658.279257 C =13114.902280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.129 3.871 7 C -0.289 4.289 8 C 0.596 3.404 9 O -0.558 6.558 10 N -0.714 5.714 11 C 0.155 3.845 12 H 0.085 0.915 13 C -0.128 4.128 14 C -0.115 4.115 15 C -0.137 4.137 16 C 0.185 3.815 17 H 0.050 0.950 18 N -0.749 5.749 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.138 4.138 28 C 0.088 3.912 29 N -0.295 5.295 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.188 0.812 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -23.835 9.555 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.304 4.304 8 C 0.383 3.617 9 O -0.437 6.437 10 N -0.365 5.365 11 C 0.050 3.950 12 H 0.103 0.897 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.177 4.177 16 C 0.075 3.925 17 H 0.068 0.932 18 N -0.391 5.391 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.715 3.285 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.176 4.176 28 C -0.100 4.100 29 N -0.114 5.114 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.205 0.795 38 H 0.239 0.761 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.745 -24.896 9.184 26.799 hybrid contribution 0.275 1.851 0.931 2.090 sum -3.470 -23.045 10.115 25.405 Atomic orbital electron populations 1.22789 0.79825 1.03139 1.00508 1.87768 1.20683 1.26877 1.95633 1.22657 0.92412 0.85406 1.02274 1.21479 0.92794 0.78684 1.05682 1.48339 1.33081 1.12098 1.20894 1.22964 0.90757 0.94330 0.94080 1.20326 1.10337 0.96331 1.03381 1.17189 0.80280 0.81187 0.83040 1.90744 1.50677 1.75791 1.26524 1.45960 1.45736 1.12961 1.31866 1.20898 0.88472 0.88722 0.96916 0.89706 1.21908 0.96178 1.01598 0.96959 1.21496 1.00737 0.97842 0.95288 1.22245 0.99069 0.94311 1.02073 1.20129 0.93583 0.87109 0.91649 0.93188 1.42792 1.77724 1.04089 1.14478 1.19053 1.34017 0.94402 0.89741 0.89203 1.24674 1.01068 0.96975 0.96472 1.69701 1.49273 1.17912 1.21254 0.86555 0.77565 0.82388 0.82036 1.21159 1.21850 1.20307 1.22172 1.02367 0.94266 0.98843 1.24221 0.93126 0.97851 0.94828 1.77212 1.24365 0.96744 1.13119 0.89141 0.93765 0.93582 0.92532 0.91303 0.88293 0.87339 0.79462 0.76146 0.91275 0.91922 0.92756 0.92350 0.91597 0.92688 0.80649 0.93088 0.91128 0.90671 0.78951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.97 10.70 -35.23 -0.38 -3.35 16 3 C 0.05 0.36 6.11 37.16 0.23 0.59 16 4 C 0.13 0.89 6.86 -4.04 -0.03 0.86 16 5 N -0.36 -3.42 3.65 -60.81 -0.22 -3.64 16 6 C 0.13 1.26 11.25 -16.56 -0.19 1.07 16 7 C -0.29 -3.36 6.13 -105.07 -0.64 -4.01 16 8 C 0.60 8.03 7.78 -12.52 -0.10 7.93 16 9 O -0.56 -9.02 16.56 5.27 0.09 -8.93 16 10 N -0.71 -9.02 4.22 -54.88 -0.23 -9.26 16 11 C 0.15 2.03 2.78 -67.93 -0.19 1.84 16 12 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 13 C -0.13 -1.63 5.60 -26.73 -0.15 -1.78 16 14 C -0.12 -1.55 5.77 -26.73 -0.15 -1.70 16 15 C -0.14 -2.23 5.50 -26.73 -0.15 -2.37 16 16 C 0.18 3.22 2.60 -67.93 -0.18 3.04 16 17 H 0.05 0.87 6.44 -51.93 -0.33 0.54 16 18 N -0.75 -16.69 4.92 -53.42 -0.26 -16.95 16 19 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 20 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -28.78 13.97 55.49 0.78 -28.00 16 23 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 27 C -0.14 -1.99 5.08 -26.73 -0.14 -2.13 16 28 C 0.09 0.98 11.50 -16.98 -0.20 0.78 16 29 N -0.30 -3.42 12.33 30.86 0.38 -3.04 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.46 8.06 -51.93 -0.42 0.05 16 37 H 0.19 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.40 4.80 5.82 -40.82 -0.24 4.56 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.36 8.01 5.66 -40.82 -0.23 7.77 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.19 1.80 7.50 -52.49 -0.39 1.41 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -34.16 397.65 -7.50 -41.66 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.91 Total: 9.77 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.02 Total: -1.26 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.44 Total: -60.89 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.29 Total: -12.28 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.16 -7.50 -41.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.559 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds