Wall clock time and date at job start Tue Mar 31 2020 19:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99898 * 2 1 4 4 C 1.53003 * 109.47245 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47586 * 179.97438 * 4 3 2 6 6 C 1.34255 * 125.75362 * 124.99929 * 5 4 3 7 7 C 1.38045 * 107.41603 * 180.02562 * 6 5 4 8 8 C 1.47426 * 126.41391 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00092 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00093 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00083 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47374 * 324.99398 * 11 10 8 13 13 C 1.53000 * 109.47631 * 84.99376 * 11 10 8 14 14 C 1.52997 * 109.47060 * 59.99933 * 13 11 10 15 15 C 1.52999 * 109.47317 * 59.99960 * 14 13 11 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 18 18 N 1.46500 * 109.47094 * 179.97438 * 16 15 14 19 19 C 1.36943 * 120.00134 * 84.99505 * 18 16 15 20 20 H 1.08007 * 119.99758 * 0.02562 * 19 18 16 21 21 C 1.38802 * 120.00199 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00016 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00051 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47500 * 89.99631 * 23 21 19 25 25 H 1.48500 * 109.46957 * 209.99741 * 23 21 19 26 26 H 1.48499 * 109.46983 * 329.99436 * 23 21 19 27 27 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 28 28 C 1.41290 * 107.17213 * 0.24105 * 7 6 5 29 29 N 1.30445 * 108.02158 * 359.59319 * 28 7 6 30 30 H 1.08999 * 109.47212 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47252 * 299.99904 * 1 2 3 32 32 H 1.08997 * 109.47481 * 60.00099 * 1 2 3 33 33 H 1.08994 * 109.47415 * 60.00200 * 3 2 1 34 34 H 1.08999 * 109.47122 * 299.99683 * 3 2 1 35 35 H 1.09007 * 109.46465 * 59.99875 * 4 3 2 36 36 H 1.09003 * 109.47422 * 300.00361 * 4 3 2 37 37 H 1.08001 * 126.29417 * 0.02566 * 6 5 4 38 38 H 0.97000 * 119.99750 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47398 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.47194 * 300.00282 * 13 11 10 41 41 H 1.08996 * 109.47853 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.47153 * 300.00319 * 14 13 11 43 43 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 44 44 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 45 45 H 0.97004 * 120.00223 * 264.99822 * 18 16 15 46 46 H 0.97001 * 119.99795 * 180.02562 * 22 21 19 47 47 H 1.08993 * 109.47194 * 179.97438 * 27 16 15 48 48 H 1.09002 * 109.46695 * 59.99734 * 27 16 15 49 49 H 1.07998 * 125.99016 * 179.73563 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9860 0.8926 7 6 5.3261 4.2843 0.5364 8 6 6.2609 5.1863 1.2336 9 8 6.8493 4.8030 2.2264 10 7 6.4625 6.4362 0.7713 11 6 7.3917 7.3323 1.4637 12 1 7.3439 7.1468 2.5368 13 6 8.8152 7.0757 0.9649 14 6 8.8824 7.3361 -0.5413 15 6 8.4967 8.7892 -0.8254 16 6 7.0733 9.0459 -0.3264 17 1 6.3819 8.3791 -0.8417 18 7 6.7041 10.4374 -0.5979 19 6 6.1973 10.7851 -1.8217 20 1 6.0694 10.0333 -2.5866 21 6 5.8471 12.1034 -2.0787 22 7 5.3596 12.4375 -3.2548 23 14 6.0677 13.4034 -0.7556 24 1 7.4220 14.0015 -0.8700 25 1 5.0423 14.4637 -0.9276 26 1 5.9140 12.7786 0.5828 27 6 7.0060 8.7855 1.1797 28 6 4.5702 4.5889 -0.6177 29 7 3.8688 3.5345 -0.9306 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8573 0.6436 -0.8892 36 1 3.8568 0.6439 0.8908 37 1 5.4239 2.4425 1.7345 38 1 5.9928 6.7421 -0.0204 39 1 9.5066 7.7422 1.4804 40 1 9.0900 6.0405 1.1672 41 1 9.8963 7.1529 -0.8969 42 1 8.1910 6.6693 -1.0566 43 1 8.5442 8.9746 -1.8985 44 1 9.1881 9.4560 -0.3101 45 1 6.8187 11.1125 0.0892 46 1 5.1152 13.3588 -3.4345 47 1 5.9921 8.9688 1.5352 48 1 7.6974 9.4523 1.6949 49 1 4.5743 5.5291 -1.1492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981491414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:58 Heat of formation + Delta-G solvation = -22.860071 kcal Electronic energy + Delta-G solvation = -28905.609919 eV Core-core repulsion = 24868.572081 eV Total energy + Delta-G solvation = -4037.037838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.44420 -40.89973 -39.11487 -38.89954 -36.19129 -35.04011 -34.27227 -33.18610 -31.61179 -31.08958 -30.17740 -29.54946 -27.26188 -25.38328 -24.71874 -24.13733 -23.23019 -22.41464 -21.71864 -21.34793 -20.21658 -19.42985 -19.03599 -17.71266 -17.36776 -16.91619 -16.68231 -16.58534 -16.36206 -16.27274 -15.91767 -15.60308 -15.33679 -15.15300 -14.87093 -14.79699 -14.61171 -14.28880 -14.18586 -13.80609 -13.64618 -13.07146 -13.03822 -13.00049 -12.94979 -12.81546 -12.72639 -12.36804 -12.35931 -12.00219 -11.92297 -11.78510 -11.58706 -11.46840 -10.98311 -10.87255 -10.83532 -10.79188 -10.65510 -10.04534 -9.65049 -9.24850 -7.97326 -5.29705 0.51298 1.12454 1.20163 1.41208 1.43893 1.51148 2.38108 2.50830 2.52663 2.71550 3.34453 3.47134 3.53881 3.78500 3.84511 3.85091 3.91723 3.98132 4.11513 4.18249 4.24019 4.30261 4.33647 4.39534 4.43910 4.47968 4.57837 4.61893 4.63464 4.70836 4.73636 4.75759 4.81695 4.86804 5.00922 5.14917 5.22516 5.26325 5.35933 5.42601 5.54995 5.57472 5.71496 5.77623 5.84042 6.00497 6.26970 6.45914 6.68036 7.13775 7.35060 7.90849 8.08842 9.24118 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.002401 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.641224 B =11658.279257 C =13114.902280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.055 3.945 4 C 0.131 3.869 5 N -0.358 5.358 6 C 0.142 3.858 7 C -0.312 4.312 8 C 0.598 3.402 9 O -0.586 6.586 10 N -0.712 5.712 11 C 0.160 3.840 12 H 0.087 0.913 13 C -0.121 4.121 14 C -0.106 4.106 15 C -0.129 4.129 16 C 0.178 3.822 17 H 0.047 0.953 18 N -0.752 5.752 19 C -0.220 4.220 20 H 0.059 0.941 21 C -0.068 4.068 22 N -0.986 5.986 23 Si 0.952 3.048 24 H -0.282 1.282 25 H -0.301 1.301 26 H -0.249 1.249 27 C -0.126 4.126 28 C 0.085 3.915 29 N -0.321 5.321 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.214 0.786 38 H 0.405 0.595 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.058 0.942 45 H 0.365 0.635 46 H 0.255 0.745 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -25.229 11.957 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.022 4.022 4 C 0.011 3.989 5 N -0.137 5.137 6 C -0.010 4.010 7 C -0.327 4.327 8 C 0.387 3.613 9 O -0.468 6.468 10 N -0.363 5.363 11 C 0.055 3.945 12 H 0.105 0.895 13 C -0.159 4.159 14 C -0.144 4.144 15 C -0.169 4.169 16 C 0.070 3.930 17 H 0.065 0.935 18 N -0.394 5.394 19 C -0.351 4.351 20 H 0.077 0.923 21 C -0.259 4.259 22 N -0.637 5.637 23 Si 0.780 3.220 24 H -0.209 1.209 25 H -0.229 1.229 26 H -0.173 1.173 27 C -0.164 4.164 28 C -0.103 4.103 29 N -0.140 5.140 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.156 0.844 37 H 0.231 0.769 38 H 0.242 0.758 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.198 0.802 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.106 0.894 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.061 -26.343 11.611 28.950 hybrid contribution 0.028 2.111 0.131 2.115 sum -3.033 -24.232 11.742 27.097 Atomic orbital electron populations 1.22967 0.78761 1.04312 1.00863 1.87745 1.21922 1.26893 1.95668 1.22554 0.92856 0.85291 1.01523 1.21747 0.92315 0.77469 1.07411 1.48535 1.32642 1.12470 1.20091 1.23368 0.89754 0.93769 0.94085 1.20282 1.11173 0.97127 1.04088 1.17361 0.80031 0.81271 0.82598 1.90723 1.51964 1.76329 1.27793 1.45944 1.45608 1.12889 1.31818 1.20836 0.88806 0.87752 0.97102 0.89478 1.21859 0.96088 1.01889 0.96106 1.21402 1.01363 0.95512 0.96137 1.22088 0.98199 0.96491 1.00088 1.20376 0.94035 0.84481 0.94075 0.93529 1.42819 1.77515 1.06263 1.12817 1.19015 1.31913 0.93521 0.90632 0.92292 1.25474 1.02093 0.99534 0.98833 1.69885 1.51855 1.18119 1.23838 0.85446 0.77012 0.79126 0.80414 1.20879 1.22861 1.17307 1.22037 1.02766 0.95502 0.96107 1.24385 0.92883 0.98196 0.94813 1.77175 1.25094 0.97449 1.14332 0.87630 0.93147 0.93516 0.92571 0.92801 0.87774 0.84436 0.76900 0.75845 0.89878 0.91981 0.91527 0.92459 0.94480 0.92359 0.80236 0.93614 0.91303 0.89409 0.78231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.61 10.70 -148.98 -1.59 -7.20 16 3 C 0.06 0.74 6.11 71.98 0.44 1.18 16 4 C 0.13 1.47 6.86 86.38 0.59 2.06 16 5 N -0.36 -6.17 3.65 -346.29 -1.26 -7.44 16 6 C 0.14 2.49 11.25 84.28 0.95 3.44 16 7 C -0.31 -6.89 6.13 -20.15 -0.12 -7.02 16 8 C 0.60 15.34 7.78 86.66 0.67 16.01 16 9 O -0.59 -18.00 16.56 -4.05 -0.07 -18.07 16 10 N -0.71 -17.03 4.22 -445.80 -1.88 -18.91 16 11 C 0.16 3.84 2.78 44.99 0.13 3.97 16 12 H 0.09 2.15 7.58 -2.39 -0.02 2.13 16 13 C -0.12 -2.77 5.60 30.59 0.17 -2.59 16 14 C -0.11 -2.65 5.77 30.59 0.18 -2.47 16 15 C -0.13 -4.04 5.50 30.60 0.17 -3.88 16 16 C 0.18 6.00 2.60 44.99 0.12 6.12 16 17 H 0.05 1.61 6.44 -2.39 -0.02 1.60 16 18 N -0.75 -32.75 4.92 -322.93 -1.59 -34.34 16 19 C -0.22 -11.99 10.41 84.03 0.87 -11.12 16 20 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 22 N -0.99 -62.56 13.97 21.65 0.30 -62.26 16 23 Si 0.95 44.77 27.74 68.60 1.90 46.67 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.25 -10.39 6.52 99.48 0.65 -9.74 16 27 C -0.13 -3.34 5.08 30.59 0.16 -3.19 16 28 C 0.09 1.85 11.50 85.65 0.99 2.84 16 29 N -0.32 -7.24 12.33 -56.28 -0.69 -7.93 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.14 0.76 8.06 -2.39 -0.02 0.74 16 37 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.40 9.33 5.82 -92.71 -0.54 8.79 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.45 7.60 -2.39 -0.02 1.43 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.36 15.35 5.66 -92.71 -0.52 14.83 16 46 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.20 3.75 7.50 -2.91 -0.02 3.73 16 Total: -1.00 -74.22 397.65 1.97 -72.25 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -0.16 Total: 33.87 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 7.02 Total: 3.37 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -5.13 Total: -130.89 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.66 Total: -25.27 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Total: -74.22 1.97 -72.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.390 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds