Wall clock time and date at job start Tue Mar 31 2020 19:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34260 * 125.75582 * 124.71720 * 5 4 3 7 7 C 1.38042 * 107.41823 * 179.84204 * 6 5 4 8 8 C 1.47434 * 126.41851 * 180.15417 * 7 6 5 9 9 O 1.21605 * 119.99444 * 0.32968 * 8 7 6 10 10 N 1.34768 * 120.00240 * 180.32624 * 8 7 6 11 11 C 1.46501 * 120.00183 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46973 * 325.00630 * 11 10 8 13 13 C 1.52998 * 109.47176 * 84.99976 * 11 10 8 14 14 C 1.53002 * 109.47325 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46882 * 300.00279 * 14 13 11 16 16 C 1.53001 * 109.47131 * 60.00236 * 15 14 13 17 17 H 1.09000 * 109.47461 * 59.99769 * 16 15 14 18 18 N 1.46498 * 109.46920 * 179.97438 * 16 15 14 19 19 C 1.36945 * 119.99842 * 274.99822 * 18 16 15 20 20 H 1.07998 * 119.99584 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99732 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00270 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99788 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47397 * 89.99646 * 23 21 19 25 25 H 1.48498 * 109.47092 * 210.00110 * 23 21 19 26 26 H 1.48507 * 109.47085 * 329.99662 * 23 21 19 27 27 C 1.52993 * 109.46878 * 299.99565 * 16 15 14 28 28 C 1.41290 * 107.16914 * 0.41695 * 7 6 5 29 29 N 1.30443 * 108.02510 * 359.74138 * 28 7 6 30 30 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 31 31 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 32 32 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 34 34 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 35 35 H 1.09001 * 109.47194 * 299.99575 * 4 3 2 36 36 H 1.08992 * 109.47399 * 59.99748 * 4 3 2 37 37 H 1.08001 * 126.29202 * 359.97438 * 6 5 4 38 38 H 0.96995 * 120.00215 * 0.02562 * 10 8 7 39 39 H 1.08999 * 109.47191 * 300.00793 * 13 11 10 40 40 H 1.09000 * 109.46943 * 60.00184 * 13 11 10 41 41 H 1.08998 * 109.46984 * 180.02562 * 14 13 11 42 42 H 1.09000 * 109.47077 * 60.00122 * 14 13 11 43 43 H 1.09000 * 109.47137 * 299.99807 * 15 14 13 44 44 H 1.09003 * 109.46799 * 179.97438 * 15 14 13 45 45 H 0.96998 * 120.00575 * 94.99470 * 18 16 15 46 46 H 0.97000 * 120.00123 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.47180 * 299.99924 * 27 16 15 48 48 H 1.08999 * 109.47559 * 180.02562 * 27 16 15 49 49 H 1.08000 * 125.98893 * 179.78504 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0175 2.9869 0.8955 7 6 5.3270 4.2835 0.5372 8 6 6.2630 5.1845 1.2341 9 8 6.8533 4.7995 2.2251 10 7 6.4644 6.4347 0.7730 11 6 7.3949 7.3298 1.4652 12 1 7.3485 7.1429 2.5381 13 6 8.8175 7.0733 0.9640 14 6 9.7895 8.0076 1.6874 15 6 9.4040 9.4613 1.4062 16 6 7.9814 9.7178 1.9075 17 1 7.9349 9.5306 2.9803 18 7 7.6126 11.1099 1.6388 19 6 7.9616 12.0940 2.5249 20 1 8.5084 11.8437 3.4220 21 6 7.6117 13.4130 2.2705 22 7 6.9449 13.7179 1.1775 23 14 8.0872 14.7552 3.4796 24 1 9.4203 15.2993 3.1162 25 1 7.0785 15.8440 3.4323 26 1 8.1407 14.1894 4.8515 27 6 7.0096 8.7835 1.1841 28 6 4.5742 4.5877 -0.6191 29 7 3.8680 3.5357 -0.9293 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8574 0.6437 0.8892 36 1 3.8566 0.6440 -0.8908 37 1 5.4167 2.4444 1.7398 38 1 5.9933 6.7419 -0.0173 39 1 9.0922 6.0377 1.1646 40 1 8.8640 7.2601 -0.1089 41 1 10.8029 7.8251 1.3299 42 1 9.7429 7.8204 2.7602 43 1 9.4505 9.6485 0.3334 44 1 10.0961 10.1270 1.9219 45 1 7.1212 11.3347 0.8333 46 1 6.7000 14.6396 1.0000 47 1 7.0560 8.9708 0.1113 48 1 5.9960 8.9665 1.5409 49 1 4.5825 5.5264 -1.1531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981491419.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:03 Heat of formation + Delta-G solvation = -6.031216 kcal Electronic energy + Delta-G solvation = -28182.017827 eV Core-core repulsion = 24145.709744 eV Total energy + Delta-G solvation = -4036.308084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72275 -39.59879 -38.53750 -37.74050 -34.64160 -34.36031 -33.23593 -31.10937 -30.81515 -30.10626 -28.85756 -27.70770 -26.81171 -24.15479 -23.74956 -23.25133 -21.88573 -21.16243 -20.86549 -20.10702 -19.35872 -18.23281 -17.20434 -16.93123 -16.79877 -16.09159 -15.98654 -15.78968 -15.26698 -14.75626 -14.72885 -14.43891 -14.33369 -13.92478 -13.70754 -13.66485 -13.48409 -13.14137 -13.06460 -12.63963 -12.60124 -12.26033 -12.08771 -12.01319 -11.94250 -11.33855 -10.97327 -10.88238 -10.85029 -10.67815 -10.34232 -10.30568 -10.23203 -10.13501 -10.01437 -9.98426 -9.67221 -9.54505 -9.10683 -8.86918 -8.76988 -6.93658 -5.74938 -3.03238 1.22809 1.76726 1.91481 3.16769 3.29143 3.42871 3.45209 3.50716 3.51970 4.02428 4.28102 4.42561 4.44834 4.60261 4.61872 4.75698 4.77882 4.87539 4.94728 5.05278 5.06028 5.11772 5.15074 5.20692 5.36170 5.45675 5.54141 5.65986 5.73788 5.81329 5.93037 6.02260 6.05749 6.08580 6.19336 6.34534 6.36293 6.40283 6.47180 6.56887 6.60212 6.70235 6.77698 7.00834 7.16079 7.16667 7.63602 7.73116 8.33729 8.43966 9.55139 10.12899 10.47627 11.47813 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.001809 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.545517 B =15477.217666 C =16335.841579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.363 5.363 6 C 0.131 3.869 7 C -0.288 4.288 8 C 0.594 3.406 9 O -0.552 6.552 10 N -0.719 5.719 11 C 0.151 3.849 12 H 0.088 0.912 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.183 3.817 17 H 0.048 0.952 18 N -0.724 5.724 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.129 4.129 28 C 0.086 3.914 29 N -0.297 5.297 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.189 0.811 38 H 0.397 0.603 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 -27.948 -4.838 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.020 4.020 7 C -0.303 4.303 8 C 0.381 3.619 9 O -0.430 6.430 10 N -0.368 5.368 11 C 0.047 3.953 12 H 0.106 0.894 13 C -0.162 4.162 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.066 0.934 18 N -0.365 5.365 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.168 4.168 28 C -0.103 4.103 29 N -0.117 5.117 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.206 0.794 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.014 -28.912 -4.796 30.662 hybrid contribution 0.224 1.656 0.432 1.726 sum -8.790 -27.256 -4.364 28.969 Atomic orbital electron populations 1.22795 0.79791 1.03190 1.00491 1.87775 1.20709 1.26824 1.95627 1.22656 0.92403 0.85453 1.02225 1.21495 0.92804 0.78614 1.05767 1.48323 1.33210 1.11999 1.20811 1.23004 0.90677 0.94336 0.93972 1.20353 1.10326 0.96461 1.03167 1.17192 0.80399 0.81186 0.83123 1.90770 1.50301 1.75585 1.26390 1.45914 1.45936 1.13130 1.31835 1.21008 0.87939 0.88728 0.97639 0.89422 1.21882 0.94565 0.99546 1.00238 1.21488 0.97830 0.95826 1.00201 1.22287 1.00103 0.94026 1.01269 1.20102 0.90664 0.85070 0.96908 0.93362 1.42401 1.67252 1.00577 1.26227 1.19258 1.29202 0.87174 1.01133 0.91140 1.24726 1.01152 0.97271 0.97856 1.69657 1.44338 1.18003 1.26248 0.86209 0.77580 0.82010 0.80526 1.21772 1.21849 1.20768 1.22087 1.00828 0.92360 1.01542 1.24142 0.93312 0.97822 0.94979 1.77169 1.24253 0.96787 1.13474 0.93718 0.93624 0.89103 0.92486 0.91402 0.87252 0.88263 0.79358 0.76875 0.92158 0.92088 0.92576 0.92185 0.92677 0.91963 0.78347 0.93588 0.91715 0.91302 0.79115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.68 10.70 -35.23 -0.38 -3.06 16 3 C 0.05 0.32 6.11 37.16 0.23 0.54 16 4 C 0.13 0.77 6.86 -4.04 -0.03 0.74 16 5 N -0.36 -3.04 3.65 -60.81 -0.22 -3.26 16 6 C 0.13 1.17 11.25 -16.56 -0.19 0.99 16 7 C -0.29 -3.06 6.13 -105.06 -0.64 -3.71 16 8 C 0.59 7.78 7.78 -12.52 -0.10 7.68 16 9 O -0.55 -9.09 16.56 5.27 0.09 -9.00 16 10 N -0.72 -8.55 5.07 -54.88 -0.28 -8.82 16 11 C 0.15 2.12 2.45 -67.93 -0.17 1.95 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 14 C -0.11 -1.66 5.92 -26.73 -0.16 -1.81 16 15 C -0.14 -2.40 5.50 -26.73 -0.15 -2.54 16 16 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 17 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 18 N -0.72 -17.77 5.12 -53.43 -0.27 -18.05 16 19 C -0.24 -6.51 9.93 -15.05 -0.15 -6.66 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.13 -2.03 4.86 -26.74 -0.13 -2.16 16 28 C 0.09 0.79 11.50 -16.98 -0.20 0.60 16 29 N -0.30 -2.98 12.33 30.86 0.38 -2.59 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.40 3.71 7.56 -40.82 -0.31 3.40 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.38 9.94 7.80 -40.82 -0.32 9.63 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.19 1.22 7.50 -52.49 -0.39 0.82 16 LS Contribution 405.20 15.07 6.11 6.11 Total: -1.00 -34.30 405.20 -8.01 -42.31 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.14 Total: 8.37 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.99 Total: -2.09 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.33 Total: -59.99 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.29 Total: -12.06 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.30 -8.01 -42.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491419.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.276 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds