Wall clock time and date at job start Tue Mar 31 2020 19:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34260 * 125.75582 * 124.71720 * 5 4 3 7 7 C 1.38042 * 107.41823 * 179.84204 * 6 5 4 8 8 C 1.47434 * 126.41851 * 180.15417 * 7 6 5 9 9 O 1.21605 * 119.99444 * 0.32968 * 8 7 6 10 10 N 1.34768 * 120.00240 * 180.32624 * 8 7 6 11 11 C 1.46501 * 120.00183 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46973 * 325.00630 * 11 10 8 13 13 C 1.52998 * 109.47176 * 84.99976 * 11 10 8 14 14 C 1.53002 * 109.47325 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46882 * 300.00279 * 14 13 11 16 16 C 1.53001 * 109.47131 * 60.00236 * 15 14 13 17 17 H 1.09000 * 109.47461 * 59.99769 * 16 15 14 18 18 N 1.46498 * 109.46920 * 179.97438 * 16 15 14 19 19 C 1.36945 * 119.99842 * 274.99822 * 18 16 15 20 20 H 1.07998 * 119.99584 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99732 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00270 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99788 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47397 * 89.99646 * 23 21 19 25 25 H 1.48498 * 109.47092 * 210.00110 * 23 21 19 26 26 H 1.48507 * 109.47085 * 329.99662 * 23 21 19 27 27 C 1.52993 * 109.46878 * 299.99565 * 16 15 14 28 28 C 1.41290 * 107.16914 * 0.41695 * 7 6 5 29 29 N 1.30443 * 108.02510 * 359.74138 * 28 7 6 30 30 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 31 31 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 32 32 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 34 34 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 35 35 H 1.09001 * 109.47194 * 299.99575 * 4 3 2 36 36 H 1.08992 * 109.47399 * 59.99748 * 4 3 2 37 37 H 1.08001 * 126.29202 * 359.97438 * 6 5 4 38 38 H 0.96995 * 120.00215 * 0.02562 * 10 8 7 39 39 H 1.08999 * 109.47191 * 300.00793 * 13 11 10 40 40 H 1.09000 * 109.46943 * 60.00184 * 13 11 10 41 41 H 1.08998 * 109.46984 * 180.02562 * 14 13 11 42 42 H 1.09000 * 109.47077 * 60.00122 * 14 13 11 43 43 H 1.09000 * 109.47137 * 299.99807 * 15 14 13 44 44 H 1.09003 * 109.46799 * 179.97438 * 15 14 13 45 45 H 0.96998 * 120.00575 * 94.99470 * 18 16 15 46 46 H 0.97000 * 120.00123 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.47180 * 299.99924 * 27 16 15 48 48 H 1.08999 * 109.47559 * 180.02562 * 27 16 15 49 49 H 1.08000 * 125.98893 * 179.78504 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0175 2.9869 0.8955 7 6 5.3270 4.2835 0.5372 8 6 6.2630 5.1845 1.2341 9 8 6.8533 4.7995 2.2251 10 7 6.4644 6.4347 0.7730 11 6 7.3949 7.3298 1.4652 12 1 7.3485 7.1429 2.5381 13 6 8.8175 7.0733 0.9640 14 6 9.7895 8.0076 1.6874 15 6 9.4040 9.4613 1.4062 16 6 7.9814 9.7178 1.9075 17 1 7.9349 9.5306 2.9803 18 7 7.6126 11.1099 1.6388 19 6 7.9616 12.0940 2.5249 20 1 8.5084 11.8437 3.4220 21 6 7.6117 13.4130 2.2705 22 7 6.9449 13.7179 1.1775 23 14 8.0872 14.7552 3.4796 24 1 9.4203 15.2993 3.1162 25 1 7.0785 15.8440 3.4323 26 1 8.1407 14.1894 4.8515 27 6 7.0096 8.7835 1.1841 28 6 4.5742 4.5877 -0.6191 29 7 3.8680 3.5357 -0.9293 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8574 0.6437 0.8892 36 1 3.8566 0.6440 -0.8908 37 1 5.4167 2.4444 1.7398 38 1 5.9933 6.7419 -0.0173 39 1 9.0922 6.0377 1.1646 40 1 8.8640 7.2601 -0.1089 41 1 10.8029 7.8251 1.3299 42 1 9.7429 7.8204 2.7602 43 1 9.4505 9.6485 0.3334 44 1 10.0961 10.1270 1.9219 45 1 7.1212 11.3347 0.8333 46 1 6.7000 14.6396 1.0000 47 1 7.0560 8.9708 0.1113 48 1 5.9960 8.9665 1.5409 49 1 4.5825 5.5264 -1.1531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981491419.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:02 Heat of formation + Delta-G solvation = -30.008899 kcal Electronic energy + Delta-G solvation = -28183.057578 eV Core-core repulsion = 24145.709744 eV Total energy + Delta-G solvation = -4037.347834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.43260 -40.70222 -39.12834 -38.92003 -36.17191 -35.09054 -34.59875 -32.90398 -31.59183 -30.97601 -29.96789 -29.17572 -27.25183 -25.69131 -24.74715 -24.16720 -23.14194 -22.26423 -21.68852 -21.16473 -20.62821 -19.28990 -18.77846 -17.67384 -17.36681 -17.28258 -16.60261 -16.56222 -16.32626 -16.03480 -15.75937 -15.56404 -15.31812 -15.15263 -15.03272 -14.88607 -14.56510 -14.32893 -14.12542 -13.79238 -13.50827 -13.35190 -13.06409 -12.88946 -12.78920 -12.72621 -12.36649 -12.23576 -12.12666 -12.03051 -11.99311 -11.93741 -11.60025 -11.41459 -11.31793 -10.85274 -10.80907 -10.76782 -10.64829 -10.07429 -9.66098 -8.96714 -7.91628 -5.19001 0.50055 1.14087 1.19677 1.48912 1.49756 1.58095 2.29921 2.49853 2.59170 2.72026 3.41772 3.49523 3.68873 3.78994 3.84910 3.86547 3.92923 4.08458 4.11322 4.18580 4.28190 4.32819 4.36674 4.44148 4.47834 4.48232 4.58694 4.62172 4.62892 4.65677 4.71675 4.77802 4.81989 4.82201 5.08095 5.19107 5.22908 5.27407 5.38227 5.40619 5.53718 5.55570 5.59579 5.71301 5.75957 6.00855 6.31300 6.46585 6.70407 7.35976 7.37646 8.14096 8.37733 9.31691 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.001809 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.545517 B =15477.217666 C =16335.841579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.139 3.861 7 C -0.311 4.311 8 C 0.596 3.404 9 O -0.590 6.590 10 N -0.710 5.710 11 C 0.162 3.838 12 H 0.069 0.931 13 C -0.116 4.116 14 C -0.106 4.106 15 C -0.126 4.126 16 C 0.176 3.824 17 H 0.036 0.964 18 N -0.735 5.735 19 C -0.237 4.237 20 H 0.072 0.928 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.272 1.272 27 C -0.115 4.115 28 C 0.090 3.910 29 N -0.320 5.320 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.209 0.791 38 H 0.411 0.589 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.040 0.960 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 -29.661 -5.014 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.138 5.138 6 C -0.013 4.013 7 C -0.326 4.326 8 C 0.385 3.615 9 O -0.472 6.472 10 N -0.360 5.360 11 C 0.057 3.943 12 H 0.087 0.913 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.166 4.166 16 C 0.067 3.933 17 H 0.054 0.946 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.090 0.910 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.797 3.203 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.197 1.197 27 C -0.153 4.153 28 C -0.098 4.098 29 N -0.139 5.139 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.225 0.775 38 H 0.248 0.752 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.971 -30.674 -4.989 32.346 hybrid contribution 0.163 2.065 0.496 2.130 sum -8.808 -28.609 -4.493 30.270 Atomic orbital electron populations 1.22967 0.78743 1.04288 1.00899 1.87750 1.21940 1.26972 1.95673 1.22562 0.92784 0.85277 1.01575 1.21735 0.92365 0.77538 1.07335 1.48506 1.32726 1.12443 1.20092 1.23340 0.89950 0.93983 0.94034 1.20222 1.11192 0.96961 1.04229 1.17474 0.80145 0.81338 0.82580 1.90748 1.51964 1.76336 1.28147 1.45727 1.45553 1.12646 1.32042 1.20716 0.88879 0.87853 0.96899 0.91320 1.21810 0.93618 0.99226 1.00777 1.21416 0.99128 0.93564 1.00413 1.22093 0.98035 0.95857 1.00643 1.20318 0.92718 0.83382 0.96837 0.94614 1.42571 1.67264 1.02214 1.25432 1.19601 1.27954 0.88042 1.01304 0.90978 1.25476 1.02057 0.99435 0.99703 1.69800 1.46079 1.17977 1.28036 0.85218 0.76932 0.79160 0.78946 1.21526 1.22277 1.19696 1.21871 0.99262 0.92625 1.01585 1.24508 0.92325 0.98507 0.94431 1.77151 1.24955 0.97401 1.14431 0.93233 0.93315 0.87739 0.92717 0.92479 0.84837 0.87602 0.77458 0.75211 0.91986 0.90802 0.90674 0.92347 0.92797 0.94103 0.79428 0.94136 0.90559 0.92066 0.76884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.02 10.70 -148.98 -1.59 -6.61 16 3 C 0.06 0.63 6.11 71.98 0.44 1.07 16 4 C 0.13 1.24 6.86 86.38 0.59 1.84 16 5 N -0.36 -5.37 3.65 -346.31 -1.26 -6.63 16 6 C 0.14 2.24 11.25 84.28 0.95 3.19 16 7 C -0.31 -6.14 6.13 -20.15 -0.12 -6.26 16 8 C 0.60 14.89 7.78 86.67 0.67 15.56 16 9 O -0.59 -19.03 16.56 -4.05 -0.07 -19.10 16 10 N -0.71 -15.81 5.07 -445.80 -2.26 -18.07 16 11 C 0.16 4.34 2.45 44.99 0.11 4.45 16 12 H 0.07 2.15 7.58 -2.38 -0.02 2.14 16 13 C -0.12 -2.92 5.49 30.59 0.17 -2.75 16 14 C -0.11 -2.91 5.92 30.59 0.18 -2.72 16 15 C -0.13 -4.35 5.50 30.59 0.17 -4.18 16 16 C 0.18 6.81 2.77 44.99 0.12 6.93 16 17 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 18 N -0.74 -36.46 5.12 -322.95 -1.65 -38.11 16 19 C -0.24 -13.14 9.93 84.03 0.83 -12.31 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 22 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 23 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 C -0.11 -3.51 4.86 30.59 0.15 -3.36 16 28 C 0.09 1.51 11.50 85.65 0.99 2.50 16 29 N -0.32 -5.91 12.33 -56.28 -0.69 -6.60 16 30 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.13 0.63 8.06 -2.39 -0.02 0.61 16 36 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.41 6.86 7.56 -92.71 -0.70 6.16 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 45 H 0.37 19.69 7.80 -92.71 -0.72 18.96 16 46 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.08 2.17 8.14 -2.38 -0.02 2.16 16 48 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.21 2.25 7.50 -2.91 -0.02 2.23 16 Total: -1.00 -73.75 405.20 1.27 -72.47 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.47 Total: 31.21 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 6.97 Total: 1.63 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.59 Total: -127.95 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.66 Total: -25.71 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -73.75 1.27 -72.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491419.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.463 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds