Wall clock time and date at job start Tue Mar 31 2020 19:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47263 * 179.97438 * 4 3 2 6 6 C 1.34254 * 125.75497 * 124.71972 * 5 4 3 7 7 C 1.38050 * 107.41518 * 179.85019 * 6 5 4 8 8 C 1.47425 * 126.41275 * 180.12433 * 7 6 5 9 9 O 1.21610 * 120.00008 * 0.31095 * 8 7 6 10 10 N 1.34782 * 119.99972 * 180.31655 * 8 7 6 11 11 C 1.46494 * 119.99820 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47464 * 34.99798 * 11 10 8 13 13 C 1.53000 * 109.47243 * 274.99890 * 11 10 8 14 14 C 1.52998 * 109.47498 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47156 * 59.99740 * 14 13 11 16 16 C 1.53005 * 109.47207 * 300.00143 * 15 14 13 17 17 H 1.08997 * 109.47055 * 299.99959 * 16 15 14 18 18 N 1.46506 * 109.47039 * 179.97438 * 16 15 14 19 19 C 1.36932 * 119.99751 * 85.00182 * 18 16 15 20 20 H 1.08007 * 120.00328 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99966 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00069 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47233 * 89.99455 * 23 21 19 25 25 H 1.48503 * 109.47263 * 209.99854 * 23 21 19 26 26 H 1.48500 * 109.47079 * 329.99876 * 23 21 19 27 27 C 1.52999 * 109.46807 * 60.00270 * 16 15 14 28 28 C 1.41293 * 107.17044 * 0.41165 * 7 6 5 29 29 N 1.30452 * 108.02011 * 359.74501 * 28 7 6 30 30 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 32 32 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 33 33 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 34 34 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 35 35 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 36 36 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 37 37 H 1.07995 * 126.29168 * 359.97438 * 6 5 4 38 38 H 0.96997 * 119.99693 * 0.02562 * 10 8 7 39 39 H 1.09010 * 109.47087 * 300.00207 * 13 11 10 40 40 H 1.08994 * 109.47543 * 60.00076 * 13 11 10 41 41 H 1.08998 * 109.47518 * 179.97438 * 14 13 11 42 42 H 1.08997 * 109.47055 * 299.99813 * 14 13 11 43 43 H 1.09003 * 109.47361 * 60.00448 * 15 14 13 44 44 H 1.09005 * 109.47477 * 180.02562 * 15 14 13 45 45 H 0.96996 * 119.99839 * 265.00231 * 18 16 15 46 46 H 0.96999 * 119.99699 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47146 * 180.02562 * 27 16 15 48 48 H 1.08997 * 109.47567 * 60.00002 * 27 16 15 49 49 H 1.07993 * 125.98880 * 179.73075 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0170 2.9878 0.8956 7 6 5.3267 4.2842 0.5359 8 6 6.2617 5.1861 1.2328 9 8 6.8508 4.8025 2.2252 10 7 6.4637 6.4358 0.7701 11 6 7.3932 7.3318 1.4624 12 1 8.2276 6.7536 1.8593 13 6 6.6658 8.0324 2.6117 14 6 7.6364 8.9687 3.3343 15 6 8.1630 10.0155 2.3505 16 6 8.8905 9.3148 1.2012 17 1 9.7251 8.7370 1.5981 18 7 9.3942 10.3172 0.2589 19 6 10.6031 10.9204 0.4822 20 1 11.1854 10.6569 1.3529 21 6 11.0806 11.8697 -0.4108 22 7 10.3717 12.1897 -1.4727 23 14 12.7300 12.6920 -0.1065 24 1 13.8051 11.9009 -0.7572 25 1 12.7116 14.0638 -0.6751 26 1 12.9845 12.7652 1.3546 27 6 7.9198 8.3786 0.4786 28 6 4.5747 4.5869 -0.6213 29 7 3.8688 3.5345 -0.9307 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8575 0.6436 -0.8892 37 1 5.4155 2.4464 1.7407 38 1 5.9935 6.7418 -0.0211 39 1 5.8313 8.6107 2.2147 40 1 6.2903 7.2867 3.3123 41 1 7.1181 9.4682 4.1527 42 1 8.4710 8.3908 3.7312 43 1 7.3284 10.5934 1.9536 44 1 8.8549 10.6823 2.8651 45 1 8.8714 10.5535 -0.5232 46 1 10.7052 12.8533 -2.0965 47 1 8.4381 7.8791 -0.3399 48 1 7.0852 8.9565 0.0817 49 1 4.5828 5.5252 -1.1559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981491421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:07 Heat of formation + Delta-G solvation = -5.962510 kcal Electronic energy + Delta-G solvation = -28177.025473 eV Core-core repulsion = 24140.720369 eV Total energy + Delta-G solvation = -4036.305104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.72282 -39.59852 -38.54882 -37.74023 -34.64100 -34.36174 -33.23572 -31.10788 -30.81561 -30.10998 -28.85791 -27.70817 -26.82320 -24.16014 -23.74950 -23.25070 -21.88682 -21.16436 -20.86522 -20.10678 -19.35927 -18.23344 -17.20970 -16.93790 -16.80353 -16.07411 -16.01331 -15.79132 -15.24293 -14.90308 -14.60186 -14.43091 -14.31427 -13.96238 -13.79174 -13.61101 -13.45329 -13.14487 -13.05770 -12.69879 -12.55645 -12.26909 -12.08962 -12.01710 -11.94988 -11.33990 -10.96401 -10.88765 -10.85624 -10.67738 -10.35399 -10.29561 -10.24229 -10.12847 -10.01737 -9.98429 -9.66936 -9.54415 -9.10625 -8.86843 -8.76977 -6.93428 -5.74679 -3.02969 1.22859 1.76439 1.91391 3.16020 3.29188 3.42834 3.45473 3.50976 3.52201 4.02184 4.27131 4.42470 4.44525 4.60520 4.61302 4.74354 4.76269 4.87303 4.94239 5.04567 5.05943 5.10277 5.14923 5.20416 5.36002 5.45666 5.54298 5.65962 5.73777 5.81276 5.92925 6.02214 6.05743 6.08551 6.19167 6.34024 6.36202 6.40241 6.46544 6.56767 6.60213 6.70168 6.77710 7.00890 7.16087 7.16678 7.63590 7.73286 8.33719 8.44203 9.55415 10.13095 10.47897 11.48079 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.001743 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.082868 B =16059.172867 C =16554.254554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.363 5.363 6 C 0.131 3.869 7 C -0.288 4.288 8 C 0.594 3.406 9 O -0.552 6.552 10 N -0.719 5.719 11 C 0.151 3.849 12 H 0.088 0.912 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.183 3.817 17 H 0.048 0.952 18 N -0.724 5.724 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.129 4.129 28 C 0.086 3.914 29 N -0.297 5.297 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.189 0.811 38 H 0.397 0.603 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.142 -22.808 4.041 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.020 4.020 7 C -0.303 4.303 8 C 0.381 3.619 9 O -0.430 6.430 10 N -0.368 5.368 11 C 0.047 3.953 12 H 0.106 0.894 13 C -0.162 4.162 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.066 0.934 18 N -0.365 5.365 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.168 4.168 28 C -0.103 4.103 29 N -0.117 5.117 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.206 0.794 38 H 0.231 0.769 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.345 -23.833 3.964 31.585 hybrid contribution 0.796 1.389 -0.012 1.601 sum -19.549 -22.444 3.951 30.026 Atomic orbital electron populations 1.22794 0.79811 1.03198 1.00456 1.87780 1.20690 1.26824 1.95620 1.22650 0.92425 0.85448 1.02173 1.21500 0.92769 0.78632 1.05811 1.48320 1.33252 1.12022 1.20734 1.23004 0.90676 0.94294 0.94019 1.20353 1.10311 0.96510 1.03136 1.17196 0.80468 0.81043 0.83196 1.90772 1.50014 1.75909 1.26354 1.45918 1.46248 1.13072 1.31584 1.21010 0.91592 0.90140 0.92570 0.89412 1.21883 0.98642 0.98393 0.97309 1.21486 0.98486 0.97330 0.98041 1.22287 1.00222 0.97769 0.97403 1.20105 0.93326 0.89507 0.89806 0.93355 1.42399 1.21752 1.45660 1.26641 1.19256 0.95353 1.15988 1.06172 0.91144 1.24724 0.98746 1.00145 0.97376 1.69660 1.38400 1.36197 1.13994 0.86210 0.83952 0.78733 0.77436 1.21776 1.21843 1.20768 1.22092 0.99995 0.96625 0.98112 1.24144 0.93348 0.97839 0.94919 1.77171 1.24354 0.96802 1.13358 0.89097 0.93743 0.93635 0.91401 0.92544 0.87237 0.88236 0.79359 0.76873 0.92106 0.92169 0.92587 0.92182 0.92683 0.91958 0.78343 0.93591 0.91286 0.91713 0.79114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.63 10.70 -35.23 -0.38 -3.01 16 3 C 0.05 0.31 6.11 37.16 0.23 0.54 16 4 C 0.13 0.77 6.86 -4.04 -0.03 0.74 16 5 N -0.36 -3.04 3.65 -60.80 -0.22 -3.26 16 6 C 0.13 1.17 11.25 -16.56 -0.19 0.99 16 7 C -0.29 -3.07 6.13 -105.07 -0.64 -3.71 16 8 C 0.59 7.78 7.78 -12.52 -0.10 7.68 16 9 O -0.55 -9.09 16.56 5.27 0.09 -9.00 16 10 N -0.72 -8.55 5.07 -54.88 -0.28 -8.83 16 11 C 0.15 2.12 2.45 -67.93 -0.17 1.95 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.12 -1.68 5.49 -26.73 -0.15 -1.82 16 14 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 15 C -0.14 -2.39 5.50 -26.73 -0.15 -2.54 16 16 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 17 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 18 N -0.72 -17.78 5.12 -53.42 -0.27 -18.06 16 19 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.13 -2.03 4.86 -26.73 -0.13 -2.16 16 28 C 0.09 0.79 11.50 -16.98 -0.20 0.60 16 29 N -0.30 -2.98 12.33 30.86 0.38 -2.60 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.40 3.72 7.56 -40.82 -0.31 3.41 16 39 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.19 1.22 7.50 -52.49 -0.39 0.82 16 LS Contribution 405.19 15.07 6.11 6.11 Total: -1.00 -34.33 405.19 -8.01 -42.34 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -8.14 Total: 8.31 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.99 Total: -2.10 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.33 Total: -60.02 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.29 Total: -12.01 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.33 -8.01 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.377 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds