Wall clock time and date at job start Tue Mar 31 2020 19:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47263 * 179.97438 * 4 3 2 6 6 C 1.34254 * 125.75497 * 124.71972 * 5 4 3 7 7 C 1.38050 * 107.41518 * 179.85019 * 6 5 4 8 8 C 1.47425 * 126.41275 * 180.12433 * 7 6 5 9 9 O 1.21610 * 120.00008 * 0.31095 * 8 7 6 10 10 N 1.34782 * 119.99972 * 180.31655 * 8 7 6 11 11 C 1.46494 * 119.99820 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47464 * 34.99798 * 11 10 8 13 13 C 1.53000 * 109.47243 * 274.99890 * 11 10 8 14 14 C 1.52998 * 109.47498 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47156 * 59.99740 * 14 13 11 16 16 C 1.53005 * 109.47207 * 300.00143 * 15 14 13 17 17 H 1.08997 * 109.47055 * 299.99959 * 16 15 14 18 18 N 1.46506 * 109.47039 * 179.97438 * 16 15 14 19 19 C 1.36932 * 119.99751 * 85.00182 * 18 16 15 20 20 H 1.08007 * 120.00328 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99966 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00069 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47233 * 89.99455 * 23 21 19 25 25 H 1.48503 * 109.47263 * 209.99854 * 23 21 19 26 26 H 1.48500 * 109.47079 * 329.99876 * 23 21 19 27 27 C 1.52999 * 109.46807 * 60.00270 * 16 15 14 28 28 C 1.41293 * 107.17044 * 0.41165 * 7 6 5 29 29 N 1.30452 * 108.02011 * 359.74501 * 28 7 6 30 30 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 32 32 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 33 33 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 34 34 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 35 35 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 36 36 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 37 37 H 1.07995 * 126.29168 * 359.97438 * 6 5 4 38 38 H 0.96997 * 119.99693 * 0.02562 * 10 8 7 39 39 H 1.09010 * 109.47087 * 300.00207 * 13 11 10 40 40 H 1.08994 * 109.47543 * 60.00076 * 13 11 10 41 41 H 1.08998 * 109.47518 * 179.97438 * 14 13 11 42 42 H 1.08997 * 109.47055 * 299.99813 * 14 13 11 43 43 H 1.09003 * 109.47361 * 60.00448 * 15 14 13 44 44 H 1.09005 * 109.47477 * 180.02562 * 15 14 13 45 45 H 0.96996 * 119.99839 * 265.00231 * 18 16 15 46 46 H 0.96999 * 119.99699 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47146 * 180.02562 * 27 16 15 48 48 H 1.08997 * 109.47567 * 60.00002 * 27 16 15 49 49 H 1.07993 * 125.98880 * 179.73075 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0170 2.9878 0.8956 7 6 5.3267 4.2842 0.5359 8 6 6.2617 5.1861 1.2328 9 8 6.8508 4.8025 2.2252 10 7 6.4637 6.4358 0.7701 11 6 7.3932 7.3318 1.4624 12 1 8.2276 6.7536 1.8593 13 6 6.6658 8.0324 2.6117 14 6 7.6364 8.9687 3.3343 15 6 8.1630 10.0155 2.3505 16 6 8.8905 9.3148 1.2012 17 1 9.7251 8.7370 1.5981 18 7 9.3942 10.3172 0.2589 19 6 10.6031 10.9204 0.4822 20 1 11.1854 10.6569 1.3529 21 6 11.0806 11.8697 -0.4108 22 7 10.3717 12.1897 -1.4727 23 14 12.7300 12.6920 -0.1065 24 1 13.8051 11.9009 -0.7572 25 1 12.7116 14.0638 -0.6751 26 1 12.9845 12.7652 1.3546 27 6 7.9198 8.3786 0.4786 28 6 4.5747 4.5869 -0.6213 29 7 3.8688 3.5345 -0.9307 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8575 0.6436 -0.8892 37 1 5.4155 2.4464 1.7407 38 1 5.9935 6.7418 -0.0211 39 1 5.8313 8.6107 2.2147 40 1 6.2903 7.2867 3.3123 41 1 7.1181 9.4682 4.1527 42 1 8.4710 8.3908 3.7312 43 1 7.3284 10.5934 1.9536 44 1 8.8549 10.6823 2.8651 45 1 8.8714 10.5535 -0.5232 46 1 10.7052 12.8533 -2.0965 47 1 8.4381 7.8791 -0.3399 48 1 7.0852 8.9565 0.0817 49 1 4.5828 5.5252 -1.1559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981491421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:06 Heat of formation + Delta-G solvation = -29.973760 kcal Electronic energy + Delta-G solvation = -28178.066679 eV Core-core repulsion = 24140.720369 eV Total energy + Delta-G solvation = -4037.346310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.43260 -40.70179 -39.12683 -38.91782 -36.17154 -35.08966 -34.59794 -32.90298 -31.59174 -30.97486 -29.96624 -29.17514 -27.24871 -25.69001 -24.74512 -24.16671 -23.14264 -22.26493 -21.68843 -21.16416 -20.62804 -19.28916 -18.77693 -17.67461 -17.36046 -17.28312 -16.63655 -16.51031 -16.33351 -16.00264 -15.86453 -15.47559 -15.32508 -15.13396 -15.03651 -14.89278 -14.63521 -14.24780 -14.14276 -13.80652 -13.50292 -13.35356 -13.06209 -12.86862 -12.81180 -12.72701 -12.36145 -12.22471 -12.12497 -12.03304 -11.99846 -11.93261 -11.59967 -11.41465 -11.31910 -10.85189 -10.80610 -10.76678 -10.64812 -10.07389 -9.66083 -8.96601 -7.91500 -5.18845 0.50100 1.14264 1.19265 1.48996 1.49881 1.58200 2.29946 2.49854 2.59313 2.72500 3.41980 3.49659 3.68901 3.79059 3.84878 3.86720 3.92953 4.08437 4.11298 4.18672 4.28367 4.32856 4.36627 4.44497 4.48094 4.48398 4.58678 4.62305 4.62914 4.65863 4.71688 4.77813 4.82075 4.82554 5.08052 5.19081 5.22889 5.27355 5.38220 5.40582 5.53743 5.55606 5.59616 5.71328 5.75981 6.01500 6.31408 6.46561 6.70375 7.35955 7.37812 8.14185 8.37903 9.31835 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.001743 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.082868 B =16059.172867 C =16554.254554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.139 3.861 7 C -0.311 4.311 8 C 0.596 3.404 9 O -0.590 6.590 10 N -0.710 5.710 11 C 0.162 3.838 12 H 0.069 0.931 13 C -0.116 4.116 14 C -0.106 4.106 15 C -0.126 4.126 16 C 0.176 3.824 17 H 0.036 0.964 18 N -0.735 5.735 19 C -0.237 4.237 20 H 0.072 0.928 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.968 3.032 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.271 1.271 27 C -0.115 4.115 28 C 0.090 3.910 29 N -0.320 5.320 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.209 0.791 38 H 0.411 0.589 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.040 0.960 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.249 -23.989 4.767 32.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.137 5.137 6 C -0.013 4.013 7 C -0.326 4.326 8 C 0.385 3.615 9 O -0.472 6.472 10 N -0.360 5.360 11 C 0.057 3.943 12 H 0.087 0.913 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.166 4.166 16 C 0.067 3.933 17 H 0.054 0.946 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.090 0.910 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.797 3.203 24 H -0.216 1.216 25 H -0.222 1.222 26 H -0.196 1.196 27 C -0.154 4.154 28 C -0.098 4.098 29 N -0.139 5.139 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.122 0.878 37 H 0.225 0.775 38 H 0.248 0.752 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -21.494 -25.050 4.696 33.339 hybrid contribution 1.074 1.640 -0.213 1.972 sum -20.420 -23.409 4.484 31.386 Atomic orbital electron populations 1.22968 0.78713 1.04275 1.00931 1.87754 1.21976 1.27011 1.95678 1.22551 0.92653 0.85271 1.01631 1.21740 0.92488 0.77539 1.07278 1.48503 1.32774 1.12462 1.20011 1.23340 0.89935 0.93936 0.94097 1.20222 1.11174 0.97018 1.04196 1.17477 0.80202 0.81167 0.82693 1.90749 1.51681 1.76612 1.28153 1.45732 1.45711 1.12650 1.31884 1.20718 0.91652 0.89653 0.92327 0.91326 1.21809 0.98533 0.98174 0.96899 1.21415 0.98799 0.96576 0.97732 1.22092 0.99406 0.98053 0.97062 1.20322 0.93970 0.89071 0.89900 0.94607 1.42569 1.21082 1.46535 1.27296 1.19599 0.96198 1.15418 1.05689 0.90983 1.25470 1.02148 1.01417 0.97594 1.69803 1.40027 1.37079 1.14991 0.85223 0.80076 0.77300 0.77690 1.21626 1.22236 1.19631 1.21876 0.99352 0.96316 0.97807 1.24509 0.92366 0.98529 0.94363 1.77153 1.25077 0.97410 1.14304 0.87802 0.93109 0.93334 0.92486 0.92537 0.84810 0.87794 0.77458 0.75211 0.90798 0.91975 0.90670 0.92357 0.92784 0.94120 0.79424 0.94141 0.92087 0.90543 0.76885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -4.91 10.70 -148.98 -1.59 -6.50 16 3 C 0.06 0.62 6.11 71.98 0.44 1.06 16 4 C 0.13 1.24 6.86 86.38 0.59 1.83 16 5 N -0.36 -5.37 3.65 -346.29 -1.26 -6.63 16 6 C 0.14 2.25 11.25 84.28 0.95 3.19 16 7 C -0.31 -6.14 6.13 -20.15 -0.12 -6.27 16 8 C 0.60 14.89 7.78 86.66 0.67 15.57 16 9 O -0.59 -19.03 16.56 -4.06 -0.07 -19.10 16 10 N -0.71 -15.82 5.07 -445.80 -2.26 -18.08 16 11 C 0.16 4.34 2.45 44.99 0.11 4.45 16 12 H 0.07 2.15 7.58 -2.39 -0.02 2.14 16 13 C -0.12 -2.90 5.49 30.59 0.17 -2.73 16 14 C -0.11 -2.90 5.92 30.59 0.18 -2.72 16 15 C -0.13 -4.34 5.50 30.60 0.17 -4.18 16 16 C 0.18 6.81 2.77 44.99 0.12 6.93 16 17 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 18 N -0.74 -36.48 5.12 -322.92 -1.65 -38.14 16 19 C -0.24 -13.15 9.93 84.03 0.83 -12.32 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 22 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 23 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 C -0.11 -3.51 4.86 30.60 0.15 -3.36 16 28 C 0.09 1.52 11.50 85.65 0.99 2.50 16 29 N -0.32 -5.92 12.33 -56.27 -0.69 -6.61 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.13 0.63 8.06 -2.39 -0.02 0.61 16 36 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.41 6.87 7.56 -92.71 -0.70 6.17 16 39 H 0.07 1.69 8.14 -2.38 -0.02 1.68 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.37 19.70 7.80 -92.71 -0.72 18.98 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 47 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.21 2.25 7.50 -2.91 -0.02 2.23 16 Total: -1.00 -73.83 405.19 1.27 -72.55 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.47 Total: 31.07 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 6.97 Total: 1.63 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -5.59 Total: -128.03 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.66 Total: -25.60 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.83 1.27 -72.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.578 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds