Wall clock time and date at job start Tue Mar 31 2020 19:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99908 * 2 1 4 4 C 1.52999 * 109.47110 * 180.02562 * 3 2 1 5 5 N 1.46489 * 109.47381 * 180.02562 * 4 3 2 6 6 C 1.34264 * 125.75861 * 124.99921 * 5 4 3 7 7 C 1.38044 * 107.41740 * 180.26291 * 6 5 4 8 8 C 1.47425 * 126.41008 * 179.71784 * 7 6 5 9 9 O 1.21599 * 120.00564 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99582 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99808 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46806 * 35.00334 * 11 10 8 13 13 C 1.52999 * 109.47071 * 274.99924 * 11 10 8 14 14 C 1.52995 * 109.47301 * 299.99944 * 13 11 10 15 15 C 1.53000 * 109.47435 * 300.00339 * 14 13 11 16 16 C 1.52999 * 109.47153 * 59.99570 * 15 14 13 17 17 H 1.08997 * 109.46835 * 60.00296 * 16 15 14 18 18 N 1.46497 * 109.47160 * 180.02562 * 16 15 14 19 19 C 1.36943 * 120.00043 * 275.00561 * 18 16 15 20 20 H 1.07998 * 119.99890 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00045 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99984 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99785 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47374 * 90.00234 * 23 21 19 25 25 H 1.48510 * 109.46867 * 209.99698 * 23 21 19 26 26 H 1.48498 * 109.47382 * 329.99542 * 23 21 19 27 27 C 1.52995 * 109.47301 * 300.00512 * 16 15 14 28 28 C 1.41294 * 107.17157 * 359.58675 * 7 6 5 29 29 N 1.30448 * 108.01962 * 0.41789 * 28 7 6 30 30 H 1.09006 * 109.47237 * 59.99773 * 1 2 3 31 31 H 1.09002 * 109.47347 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47464 * 299.99732 * 1 2 3 33 33 H 1.09004 * 109.46558 * 60.00114 * 3 2 1 34 34 H 1.09001 * 109.47175 * 300.00159 * 3 2 1 35 35 H 1.08997 * 109.47061 * 59.99718 * 4 3 2 36 36 H 1.09001 * 109.46886 * 300.00556 * 4 3 2 37 37 H 1.08002 * 126.28609 * 359.97438 * 6 5 4 38 38 H 0.96996 * 120.00065 * 0.02562 * 10 8 7 39 39 H 1.09005 * 109.47020 * 60.00435 * 13 11 10 40 40 H 1.08997 * 109.46835 * 180.02562 * 13 11 10 41 41 H 1.08998 * 109.47336 * 179.97438 * 14 13 11 42 42 H 1.09006 * 109.46865 * 60.00414 * 14 13 11 43 43 H 1.09000 * 109.46556 * 300.00200 * 15 14 13 44 44 H 1.08999 * 109.47303 * 180.02562 * 15 14 13 45 45 H 0.97001 * 120.00479 * 94.99850 * 18 16 15 46 46 H 0.96999 * 120.00233 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.47000 * 299.99683 * 27 16 15 48 48 H 1.08998 * 109.47336 * 180.02562 * 27 16 15 49 49 H 1.07995 * 125.98673 * 180.15835 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0217 2.9849 0.8924 7 6 5.3224 4.2855 0.5408 8 6 6.2522 5.1891 1.2426 9 8 6.8408 4.8049 2.2348 10 7 6.4505 6.4407 0.7837 11 6 7.3749 7.3385 1.4808 12 1 8.2105 6.7624 1.8783 13 6 6.6418 8.0333 2.6300 14 6 5.4690 8.8420 2.0720 15 6 5.9946 9.8934 1.0926 16 6 6.7277 9.1986 -0.0566 17 1 6.0400 8.5306 -0.5752 18 7 7.2315 10.2053 -0.9941 19 6 6.4159 10.6903 -1.9815 20 1 5.4015 10.3302 -2.0694 21 6 6.8934 11.6438 -2.8702 22 7 8.1299 12.0822 -2.7633 23 14 5.7812 12.3047 -4.2175 24 1 5.0516 13.4972 -3.7166 25 1 6.6024 12.6854 -5.3949 26 1 4.8055 11.2572 -4.6123 27 6 7.9005 8.3899 0.5014 28 6 4.5746 4.5875 -0.6194 29 7 3.8685 3.5354 -0.9296 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8463 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 5.4246 2.4407 1.7338 38 1 5.9813 6.7471 -0.0080 39 1 6.2674 7.2842 3.3278 40 1 7.3294 8.7016 3.1483 41 1 4.9465 9.3366 2.8907 42 1 4.7812 8.1740 1.5534 43 1 6.6824 10.5613 1.6112 44 1 5.1591 10.4698 0.6953 45 1 8.1426 10.5285 -0.9154 46 1 8.4634 12.7488 -3.3840 47 1 8.5882 9.0579 1.0200 48 1 8.4231 7.8953 -0.3173 49 1 4.5827 5.5263 -1.1531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981491423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:11 Heat of formation + Delta-G solvation = -3.156511 kcal Electronic energy + Delta-G solvation = -28884.031760 eV Core-core repulsion = 24847.848333 eV Total energy + Delta-G solvation = -4036.183427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62848 -39.73669 -38.48712 -37.69205 -34.45444 -34.28499 -32.93290 -31.14557 -30.72594 -30.11882 -28.95039 -27.81970 -26.77466 -24.09482 -23.73624 -23.19027 -21.98434 -21.12469 -20.86823 -20.31712 -18.71518 -18.24837 -17.22776 -16.93177 -16.78900 -15.98535 -15.83067 -15.39964 -15.30612 -15.14786 -14.62292 -14.45738 -14.31453 -13.98566 -13.71887 -13.52470 -13.43191 -13.04178 -13.00140 -12.57157 -12.38598 -12.19182 -12.02132 -11.88831 -11.81205 -11.67712 -11.20777 -10.99387 -10.87663 -10.73858 -10.34606 -10.28465 -10.18632 -10.13723 -9.87872 -9.76403 -9.72410 -9.49841 -9.02945 -8.88507 -8.68940 -6.96432 -5.77390 -3.06136 1.31600 1.85937 2.02481 3.23364 3.41087 3.42765 3.47886 3.49534 3.51344 4.10239 4.34526 4.50568 4.55159 4.57697 4.68750 4.81336 4.82791 4.96482 5.02060 5.11527 5.12926 5.15780 5.16114 5.23050 5.29326 5.51318 5.54507 5.62786 5.73009 5.81417 5.92255 6.01705 6.10643 6.13705 6.19001 6.31574 6.33802 6.42050 6.53706 6.54663 6.60509 6.74805 6.75814 6.96652 7.10983 7.27337 7.68460 7.73844 8.40958 8.41747 9.52309 10.10279 10.44527 11.45161 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.002439 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.268708 B =11479.331646 C =13091.399036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.129 3.871 7 C -0.288 4.288 8 C 0.595 3.405 9 O -0.558 6.558 10 N -0.713 5.713 11 C 0.154 3.846 12 H 0.084 0.916 13 C -0.127 4.127 14 C -0.115 4.115 15 C -0.137 4.137 16 C 0.181 3.819 17 H 0.041 0.959 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.134 4.134 28 C 0.087 3.913 29 N -0.296 5.296 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.189 0.811 38 H 0.401 0.599 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 -22.257 9.407 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.303 4.303 8 C 0.382 3.618 9 O -0.437 6.437 10 N -0.364 5.364 11 C 0.049 3.951 12 H 0.102 0.898 13 C -0.166 4.166 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.071 3.929 17 H 0.059 0.941 18 N -0.365 5.365 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.173 4.173 28 C -0.101 4.101 29 N -0.116 5.116 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.206 0.794 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.181 -23.293 9.125 27.402 hybrid contribution -0.215 1.389 -0.579 1.520 sum -11.396 -21.904 8.546 26.128 Atomic orbital electron populations 1.22791 0.79844 1.03144 1.00479 1.87773 1.20665 1.26879 1.95627 1.22656 0.92437 0.85396 1.02232 1.21473 0.92765 0.78704 1.05698 1.48326 1.33029 1.12035 1.21049 1.22970 0.90816 0.94283 0.94075 1.20346 1.10527 0.96268 1.03121 1.17188 0.80378 0.81109 0.83136 1.90742 1.50233 1.76193 1.26568 1.45970 1.46313 1.12541 1.31576 1.20932 0.91599 0.90037 0.92516 0.89774 1.21897 0.98313 0.98991 0.97372 1.21501 0.97229 0.97866 0.98736 1.22284 1.00675 0.97705 0.97044 1.20142 0.92881 0.90290 0.89613 0.94081 1.42427 1.14247 1.46586 1.33231 1.19212 0.94786 1.17355 1.05529 0.91231 1.24739 0.96465 1.00002 0.99787 1.69657 1.14858 1.33911 1.39609 0.86224 0.79549 0.78906 0.81704 1.21799 1.21837 1.20769 1.22131 0.99479 0.97089 0.98569 1.24205 0.93210 0.97876 0.94779 1.77195 1.24313 0.96833 1.13222 0.93611 0.89136 0.93768 0.92529 0.91352 0.88300 0.87333 0.79442 0.76238 0.92073 0.91232 0.92967 0.92582 0.92594 0.92140 0.78255 0.93538 0.90552 0.91191 0.79016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.93 10.70 -35.23 -0.38 -3.31 16 3 C 0.05 0.36 6.11 37.16 0.23 0.58 16 4 C 0.14 0.89 6.86 -4.05 -0.03 0.86 16 5 N -0.36 -3.43 3.65 -60.82 -0.22 -3.65 16 6 C 0.13 1.27 11.25 -16.56 -0.19 1.08 16 7 C -0.29 -3.39 6.13 -105.07 -0.64 -4.04 16 8 C 0.59 8.22 7.78 -12.52 -0.10 8.12 16 9 O -0.56 -9.23 16.56 5.28 0.09 -9.15 16 10 N -0.71 -9.34 4.22 -54.88 -0.23 -9.57 16 11 C 0.15 2.13 2.78 -67.93 -0.19 1.94 16 12 H 0.08 1.21 7.58 -51.93 -0.39 0.82 16 13 C -0.13 -1.70 5.60 -26.73 -0.15 -1.85 16 14 C -0.11 -1.60 5.77 -26.73 -0.15 -1.75 16 15 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 16 C 0.18 3.29 2.60 -67.93 -0.18 3.12 16 17 H 0.04 0.74 6.44 -51.93 -0.33 0.40 16 18 N -0.72 -17.26 5.12 -53.43 -0.27 -17.53 16 19 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 23 Si 0.90 22.02 29.55 -169.99 -5.02 16.99 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.13 -2.08 5.07 -26.73 -0.14 -2.21 16 28 C 0.09 0.97 11.50 -16.98 -0.20 0.78 16 29 N -0.30 -3.42 12.33 30.86 0.38 -3.03 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.47 8.06 -51.93 -0.42 0.05 16 37 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.40 4.94 5.82 -40.82 -0.24 4.70 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.19 1.77 7.50 -52.49 -0.39 1.38 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -33.28 400.76 -7.86 -41.14 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.96 Total: 10.54 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.01 Total: -1.53 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.38 Total: -60.73 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.29 Total: -12.45 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.28 -7.86 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.984 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds