Wall clock time and date at job start Tue Mar 31 2020 20:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 120.00056 * 2 1 4 4 H 1.08000 * 120.00581 * 199.70662 * 3 2 1 5 5 C 1.38813 * 120.00127 * 19.71162 * 3 2 1 6 6 N 1.31624 * 119.99616 * 15.37225 * 5 3 2 7 7 Si 1.86794 * 120.00431 * 195.37383 * 5 3 2 8 8 H 1.48502 * 109.47153 * 94.98055 * 7 5 3 9 9 H 1.48497 * 109.47497 * 214.98192 * 7 5 3 10 10 H 1.48501 * 109.47275 * 334.98625 * 7 5 3 11 11 C 1.46511 * 120.00090 * 180.02562 * 2 1 3 12 12 C 1.53039 * 109.45500 * 299.99646 * 11 2 1 13 13 C 1.53198 * 109.30937 * 181.37562 * 12 11 2 14 14 N 1.46927 * 108.77160 * 305.36199 * 13 12 11 15 15 C 1.34777 * 120.63258 * 233.58846 * 14 13 12 16 16 O 1.21539 * 119.99831 * 6.97971 * 15 14 13 17 17 C 1.48001 * 120.00228 * 186.98322 * 15 14 13 18 18 N 1.34189 * 126.69918 * 7.03784 * 17 15 14 19 19 N 1.28985 * 107.25207 * 180.02562 * 18 17 15 20 20 N 1.28720 * 108.98872 * 0.02562 * 19 18 17 21 21 C 1.46495 * 125.32159 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46808 * 359.96822 * 21 20 19 23 23 C 1.52992 * 109.47496 * 119.96965 * 21 20 19 24 24 C 1.52996 * 109.47019 * 239.97503 * 21 20 19 25 25 N 1.28876 * 109.36005 * 359.97438 * 20 19 18 26 26 C 1.46929 * 118.73978 * 53.86140 * 14 13 12 27 27 C 1.53035 * 109.44738 * 60.05785 * 11 2 1 28 28 H 1.09001 * 109.46811 * 274.20842 * 1 2 3 29 29 H 1.08997 * 109.47538 * 34.21001 * 1 2 3 30 30 H 1.08995 * 109.47399 * 154.21556 * 1 2 3 31 31 H 0.97002 * 119.99672 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.45427 * 180.02562 * 11 2 1 33 33 H 1.08997 * 109.50123 * 61.42437 * 12 11 2 34 34 H 1.09000 * 109.52466 * 301.33467 * 12 11 2 35 35 H 1.09004 * 109.58186 * 185.57834 * 13 12 11 36 36 H 1.08992 * 109.70496 * 65.21641 * 13 12 11 37 37 H 1.09002 * 109.47265 * 60.00555 * 22 21 20 38 38 H 1.09011 * 109.47028 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47297 * 300.00021 * 22 21 20 40 40 H 1.09006 * 109.47310 * 60.00111 * 23 21 20 41 41 H 1.09004 * 109.47485 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.47730 * 300.00296 * 23 21 20 43 43 H 1.08996 * 109.47626 * 59.99649 * 24 21 20 44 44 H 1.09003 * 109.47646 * 179.97438 * 24 21 20 45 45 H 1.09007 * 109.47176 * 299.99531 * 24 21 20 46 46 H 1.09003 * 109.58263 * 65.93010 * 26 14 13 47 47 H 1.08999 * 109.58535 * 186.35079 * 26 14 13 48 48 H 1.09003 * 109.49735 * 298.56834 * 27 11 2 49 49 H 1.08996 * 109.49886 * 58.66857 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1822 1.2134 -0.3154 5 6 1.5166 2.3528 0.4055 6 7 0.3808 2.2894 1.0675 7 14 2.2766 4.0131 0.0115 8 1 1.6817 4.5452 -1.2408 9 1 2.0094 4.9569 1.1264 10 1 3.7429 3.8571 -0.1644 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6211 -3.3819 1.2623 14 7 2.3844 -4.0910 -0.0026 15 6 1.9580 -5.3696 -0.0037 16 8 1.6442 -5.9064 1.0406 17 6 1.8718 -6.1198 -1.2765 18 7 2.3035 -5.7106 -2.4794 19 7 2.0413 -6.6526 -3.3207 20 7 1.4688 -7.6229 -2.6980 21 6 1.0186 -8.8746 -3.3117 22 6 1.3332 -8.8506 -4.8088 23 6 1.7425 -10.0528 -2.6571 24 6 -0.4904 -9.0274 -3.1102 25 7 1.3546 -7.3215 -1.4502 26 6 2.6272 -3.3818 -1.2662 27 6 1.8285 -2.0696 -1.2514 28 1 -0.3633 0.0754 1.0249 29 1 -0.3634 0.8498 -0.5778 30 1 -0.3634 -0.9253 -0.4470 31 1 -0.0618 3.1049 1.3505 32 1 3.2691 -1.0693 0.0000 33 1 0.7604 -2.2926 1.2365 34 1 2.0688 -1.4911 2.1393 35 1 2.2897 -4.0011 2.0959 36 1 3.6844 -3.1666 1.3671 37 1 2.4083 -8.7418 -4.9524 38 1 0.9978 -9.7819 -5.2655 39 1 0.8175 -8.0113 -5.2751 40 1 1.5183 -10.0699 -1.5905 41 1 1.4071 -10.9842 -3.1134 42 1 2.8174 -9.9440 -2.8006 43 1 -1.0061 -8.1880 -3.5765 44 1 -0.8256 -9.9585 -3.5671 45 1 -0.7146 -9.0444 -2.0435 46 1 3.6908 -3.1644 -1.3646 47 1 2.3000 -4.0010 -2.1015 48 1 0.7612 -2.2907 -1.2401 49 1 2.0706 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985443003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:43 Heat of formation + Delta-G solvation = 132.624009 kcal Electronic energy + Delta-G solvation = -30026.693126 eV Core-core repulsion = 26028.690335 eV Total energy + Delta-G solvation = -3998.002791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.63652 -39.98781 -38.05147 -37.49038 -35.12457 -33.73194 -32.93916 -32.01500 -30.64260 -29.70192 -28.19122 -28.13654 -26.07459 -25.90598 -24.95763 -24.14710 -22.71758 -22.03517 -21.05749 -20.24895 -18.79727 -17.61572 -17.52136 -16.90542 -16.70831 -16.15795 -15.21814 -15.00745 -14.79636 -14.60974 -14.53269 -14.01267 -13.79759 -13.54075 -13.38705 -13.22619 -13.10667 -13.01680 -12.93028 -12.58860 -12.42747 -12.26607 -12.21312 -12.05734 -11.83428 -11.55739 -11.47386 -11.21416 -11.01316 -10.87228 -10.79461 -10.70235 -10.52769 -10.35703 -10.24288 -10.15278 -9.91288 -9.78481 -9.48985 -8.55694 -8.45338 -6.73595 -5.67756 -3.10319 0.84995 1.31592 1.41661 2.71147 3.06288 3.41388 3.47969 3.49357 3.63256 3.82286 3.93448 4.04149 4.33777 4.52873 4.77736 4.84698 4.86251 4.95190 5.02089 5.06487 5.07827 5.23049 5.30006 5.38879 5.40041 5.44657 5.50707 5.53701 5.55750 5.60976 5.78794 5.83755 5.87987 5.98838 6.17662 6.30457 6.34933 6.42420 6.58182 6.65013 6.84762 7.03552 7.05540 7.36323 7.45520 7.76986 7.85929 7.89853 8.12958 8.43307 9.28298 9.92967 10.41439 11.37420 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.002417 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.467459 B =11584.188230 C =11992.206238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.597 5.597 3 C -0.251 4.251 4 H 0.070 0.930 5 C -0.002 4.002 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.178 3.822 12 C -0.145 4.145 13 C 0.116 3.884 14 N -0.581 5.581 15 C 0.612 3.388 16 O -0.519 6.519 17 C 0.136 3.864 18 N -0.253 5.253 19 N -0.059 5.059 20 N -0.125 5.125 21 C 0.176 3.824 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.161 4.161 25 N -0.248 5.248 26 C 0.085 3.915 27 C -0.145 4.145 28 H 0.026 0.974 29 H 0.043 0.957 30 H -0.003 1.003 31 H 0.251 0.749 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.118 0.882 48 H 0.059 0.941 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -25.798 -10.728 27.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.318 5.318 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.200 4.200 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.070 3.930 12 C -0.185 4.185 13 C -0.006 4.006 14 N -0.313 5.313 15 C 0.393 3.607 16 O -0.392 6.392 17 C -0.148 4.148 18 N -0.127 5.127 19 N -0.051 5.051 20 N -0.040 5.040 21 C 0.096 3.904 22 C -0.211 4.211 23 C -0.219 4.219 24 C -0.219 4.219 25 N -0.100 5.100 26 C -0.039 4.039 27 C -0.185 4.185 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.135 0.865 48 H 0.078 0.922 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.494 -26.052 -10.708 28.206 hybrid contribution 0.209 1.192 0.282 1.242 sum 1.703 -24.860 -10.426 27.012 Atomic orbital electron populations 1.20734 0.82745 0.95461 0.99117 1.43991 1.01817 1.00226 1.85764 1.19264 0.96550 0.84879 1.37383 0.91257 1.24948 0.97928 0.98263 0.98820 1.70110 1.18695 1.26534 1.39962 0.86248 0.78616 0.84291 0.77473 1.21671 1.21919 1.20497 1.20315 0.96050 0.85988 0.90690 1.22519 1.00062 0.94167 1.01741 1.21853 1.00302 0.93884 0.84601 1.47944 1.63756 1.10063 1.09542 1.16198 0.78762 0.81621 0.84123 1.90819 1.48885 1.68688 1.30849 1.25371 1.01971 0.91481 0.95944 1.76034 1.19316 1.18805 0.98594 1.78910 1.10244 0.93184 1.22750 1.50723 1.34990 1.15394 1.02866 1.21519 0.96839 0.77462 0.94598 1.22113 1.04255 1.04456 0.90308 1.22259 1.00961 0.95958 1.02680 1.22268 0.90842 1.04102 1.04730 1.74990 1.19679 1.15388 0.99973 1.22699 1.00834 0.94816 0.85509 1.22540 0.99953 0.94712 1.01274 0.95567 0.93847 0.98418 0.93873 0.91771 0.92079 0.90305 0.89321 0.90973 0.90469 0.89092 0.90398 0.90201 0.88958 0.91278 0.91180 0.88953 0.90188 0.91025 0.86461 0.92185 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 8.04 59.84 0.48 4.58 16 2 N -0.60 -14.78 2.81 -173.44 -0.49 -15.27 16 3 C -0.25 -6.84 9.62 -15.06 -0.14 -6.99 16 4 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 5 C 0.00 -0.05 5.05 -17.43 -0.09 -0.13 16 6 N -0.91 -26.64 10.66 55.49 0.59 -26.05 16 7 Si 0.90 21.95 29.58 -169.99 -5.03 16.92 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.18 3.55 2.55 -67.89 -0.17 3.37 16 12 C -0.14 -2.65 5.34 -26.61 -0.14 -2.79 16 13 C 0.12 1.79 6.44 -3.71 -0.02 1.77 16 14 N -0.58 -9.12 2.97 -173.55 -0.51 -9.64 16 15 C 0.61 10.19 7.70 -12.26 -0.09 10.10 16 16 O -0.52 -9.84 16.52 5.33 0.09 -9.75 16 17 C 0.14 2.07 7.81 -156.24 -1.22 0.85 16 18 N -0.25 -3.60 9.05 32.10 0.29 -3.31 16 19 N -0.06 -0.73 12.21 60.35 0.74 0.00 16 20 N -0.13 -1.37 3.72 0.52 0.00 -1.37 16 21 C 0.18 1.13 1.30 -131.83 -0.17 0.96 16 22 C -0.15 -0.68 7.90 37.16 0.29 -0.39 16 23 C -0.16 -0.80 8.66 37.15 0.32 -0.48 16 24 C -0.16 -0.85 8.66 37.16 0.32 -0.53 16 25 N -0.25 -3.41 11.86 32.11 0.38 -3.03 16 26 C 0.08 1.26 6.15 -3.48 -0.02 1.23 16 27 C -0.14 -2.50 5.34 -26.39 -0.14 -2.65 16 28 H 0.03 0.71 7.47 -51.93 -0.39 0.32 16 29 H 0.04 1.17 7.12 -51.93 -0.37 0.80 16 30 H 0.00 -0.06 6.46 -51.93 -0.34 -0.39 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 1.27 7.84 -51.93 -0.41 0.87 16 33 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.15 8.14 -51.92 -0.42 -0.27 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.12 1.72 4.14 -68.78 -0.28 1.43 16 48 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 49 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -33.17 387.68 -6.84 -40.01 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.94 Total: -3.27 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -0.80 Total: 8.91 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 1.00 Total: -58.66 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.17 -6.84 -40.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985443003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.633 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds