Wall clock time and date at job start Tue Mar 31 2020 20:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 120.00056 * 2 1 4 4 H 1.08000 * 120.00581 * 199.70662 * 3 2 1 5 5 C 1.38813 * 120.00127 * 19.71162 * 3 2 1 6 6 N 1.31624 * 119.99616 * 15.37225 * 5 3 2 7 7 Si 1.86794 * 120.00431 * 195.37383 * 5 3 2 8 8 H 1.48502 * 109.47153 * 94.98055 * 7 5 3 9 9 H 1.48497 * 109.47497 * 214.98192 * 7 5 3 10 10 H 1.48501 * 109.47275 * 334.98625 * 7 5 3 11 11 C 1.46511 * 120.00090 * 180.02562 * 2 1 3 12 12 C 1.53039 * 109.45500 * 299.99646 * 11 2 1 13 13 C 1.53198 * 109.30937 * 181.37562 * 12 11 2 14 14 N 1.46927 * 108.77160 * 305.36199 * 13 12 11 15 15 C 1.34777 * 120.63258 * 233.58846 * 14 13 12 16 16 O 1.21539 * 119.99831 * 6.97971 * 15 14 13 17 17 C 1.48001 * 120.00228 * 186.98322 * 15 14 13 18 18 N 1.34189 * 126.69918 * 7.03784 * 17 15 14 19 19 N 1.28985 * 107.25207 * 180.02562 * 18 17 15 20 20 N 1.28720 * 108.98872 * 0.02562 * 19 18 17 21 21 C 1.46495 * 125.32159 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46808 * 359.96822 * 21 20 19 23 23 C 1.52992 * 109.47496 * 119.96965 * 21 20 19 24 24 C 1.52996 * 109.47019 * 239.97503 * 21 20 19 25 25 N 1.28876 * 109.36005 * 359.97438 * 20 19 18 26 26 C 1.46929 * 118.73978 * 53.86140 * 14 13 12 27 27 C 1.53035 * 109.44738 * 60.05785 * 11 2 1 28 28 H 1.09001 * 109.46811 * 274.20842 * 1 2 3 29 29 H 1.08997 * 109.47538 * 34.21001 * 1 2 3 30 30 H 1.08995 * 109.47399 * 154.21556 * 1 2 3 31 31 H 0.97002 * 119.99672 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.45427 * 180.02562 * 11 2 1 33 33 H 1.08997 * 109.50123 * 61.42437 * 12 11 2 34 34 H 1.09000 * 109.52466 * 301.33467 * 12 11 2 35 35 H 1.09004 * 109.58186 * 185.57834 * 13 12 11 36 36 H 1.08992 * 109.70496 * 65.21641 * 13 12 11 37 37 H 1.09002 * 109.47265 * 60.00555 * 22 21 20 38 38 H 1.09011 * 109.47028 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47297 * 300.00021 * 22 21 20 40 40 H 1.09006 * 109.47310 * 60.00111 * 23 21 20 41 41 H 1.09004 * 109.47485 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.47730 * 300.00296 * 23 21 20 43 43 H 1.08996 * 109.47626 * 59.99649 * 24 21 20 44 44 H 1.09003 * 109.47646 * 179.97438 * 24 21 20 45 45 H 1.09007 * 109.47176 * 299.99531 * 24 21 20 46 46 H 1.09003 * 109.58263 * 65.93010 * 26 14 13 47 47 H 1.08999 * 109.58535 * 186.35079 * 26 14 13 48 48 H 1.09003 * 109.49735 * 298.56834 * 27 11 2 49 49 H 1.08996 * 109.49886 * 58.66857 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1822 1.2134 -0.3154 5 6 1.5166 2.3528 0.4055 6 7 0.3808 2.2894 1.0675 7 14 2.2766 4.0131 0.0115 8 1 1.6817 4.5452 -1.2408 9 1 2.0094 4.9569 1.1264 10 1 3.7429 3.8571 -0.1644 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6211 -3.3819 1.2623 14 7 2.3844 -4.0910 -0.0026 15 6 1.9580 -5.3696 -0.0037 16 8 1.6442 -5.9064 1.0406 17 6 1.8718 -6.1198 -1.2765 18 7 2.3035 -5.7106 -2.4794 19 7 2.0413 -6.6526 -3.3207 20 7 1.4688 -7.6229 -2.6980 21 6 1.0186 -8.8746 -3.3117 22 6 1.3332 -8.8506 -4.8088 23 6 1.7425 -10.0528 -2.6571 24 6 -0.4904 -9.0274 -3.1102 25 7 1.3546 -7.3215 -1.4502 26 6 2.6272 -3.3818 -1.2662 27 6 1.8285 -2.0696 -1.2514 28 1 -0.3633 0.0754 1.0249 29 1 -0.3634 0.8498 -0.5778 30 1 -0.3634 -0.9253 -0.4470 31 1 -0.0618 3.1049 1.3505 32 1 3.2691 -1.0693 0.0000 33 1 0.7604 -2.2926 1.2365 34 1 2.0688 -1.4911 2.1393 35 1 2.2897 -4.0011 2.0959 36 1 3.6844 -3.1666 1.3671 37 1 2.4083 -8.7418 -4.9524 38 1 0.9978 -9.7819 -5.2655 39 1 0.8175 -8.0113 -5.2751 40 1 1.5183 -10.0699 -1.5905 41 1 1.4071 -10.9842 -3.1134 42 1 2.8174 -9.9440 -2.8006 43 1 -1.0061 -8.1880 -3.5765 44 1 -0.8256 -9.9585 -3.5671 45 1 -0.7146 -9.0444 -2.0435 46 1 3.6908 -3.1644 -1.3646 47 1 2.3000 -4.0010 -2.1015 48 1 0.7612 -2.2907 -1.2401 49 1 2.0706 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985443003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:42 Heat of formation + Delta-G solvation = 111.692594 kcal Electronic energy + Delta-G solvation = -30027.600780 eV Core-core repulsion = 26028.690335 eV Total energy + Delta-G solvation = -3998.910445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.62938 -41.30612 -39.06775 -38.62095 -36.82351 -34.73619 -34.20468 -33.53757 -31.97309 -31.49365 -28.63782 -28.52998 -28.03518 -27.27791 -26.00681 -25.48628 -24.09074 -23.65657 -21.94345 -21.55783 -20.20409 -18.76009 -18.60714 -18.53722 -17.79247 -17.45689 -16.93395 -16.39064 -15.84602 -15.52620 -15.39553 -15.19670 -15.15068 -15.12363 -14.79527 -14.55119 -14.12808 -13.92676 -13.79401 -13.50466 -13.42323 -13.23130 -13.14922 -13.05341 -12.83859 -12.79978 -12.68402 -12.62693 -12.35805 -12.34470 -12.14266 -12.11325 -12.04535 -11.98798 -11.77922 -11.65970 -11.52015 -11.38332 -11.07100 -10.57527 -9.84081 -8.78239 -7.79214 -5.23811 -0.17646 0.21747 0.63954 1.48698 1.50062 1.55035 1.58961 1.82226 2.53134 2.64897 2.90152 3.33891 3.49337 3.49812 3.60774 3.63622 3.77062 3.96958 4.11722 4.15368 4.24694 4.34104 4.38526 4.42050 4.53327 4.55230 4.58714 4.61343 4.72197 4.73963 4.74028 4.81211 4.90706 4.97209 5.02280 5.03440 5.11164 5.11856 5.18507 5.23702 5.25633 5.34552 5.48241 5.58081 5.67519 5.72459 6.08033 6.35116 6.67661 7.04376 7.17775 7.91283 8.35624 9.24825 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.002417 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.467459 B =11584.188230 C =11992.206238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.611 5.611 3 C -0.255 4.255 4 H 0.077 0.923 5 C -0.059 4.059 6 N -0.942 5.942 7 Si 0.968 3.032 8 H -0.290 1.290 9 H -0.299 1.299 10 H -0.265 1.265 11 C 0.173 3.827 12 C -0.133 4.133 13 C 0.124 3.876 14 N -0.580 5.580 15 C 0.613 3.387 16 O -0.548 6.548 17 C 0.119 3.881 18 N -0.263 5.263 19 N -0.058 5.058 20 N -0.107 5.107 21 C 0.159 3.841 22 C -0.150 4.150 23 C -0.157 4.157 24 C -0.159 4.159 25 N -0.257 5.257 26 C 0.095 3.905 27 C -0.132 4.132 28 H -0.002 1.002 29 H 0.016 0.984 30 H 0.022 0.978 31 H 0.245 0.755 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.129 0.871 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.130 0.870 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.125 0.875 48 H 0.046 0.954 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -27.948 -12.717 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.333 5.333 3 C -0.385 4.385 4 H 0.095 0.905 5 C -0.254 4.254 6 N -0.589 5.589 7 Si 0.797 3.203 8 H -0.217 1.217 9 H -0.226 1.226 10 H -0.189 1.189 11 C 0.066 3.934 12 C -0.173 4.173 13 C 0.002 3.998 14 N -0.311 5.311 15 C 0.395 3.605 16 O -0.424 6.424 17 C -0.165 4.165 18 N -0.137 5.137 19 N -0.050 5.050 20 N -0.024 5.024 21 C 0.081 3.919 22 C -0.208 4.208 23 C -0.215 4.215 24 C -0.217 4.217 25 N -0.111 5.111 26 C -0.028 4.028 27 C -0.172 4.172 28 H 0.016 0.984 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.145 0.855 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.148 0.852 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.142 0.858 48 H 0.065 0.935 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.763 -28.229 -12.732 31.090 hybrid contribution -0.205 1.688 0.823 1.889 sum 2.558 -26.541 -11.909 29.203 Atomic orbital electron populations 1.20397 0.83385 0.95371 0.97064 1.44224 1.01768 1.01475 1.85820 1.19641 0.96889 0.85893 1.36071 0.90494 1.25729 0.98686 1.01641 0.99324 1.70279 1.20252 1.26838 1.41569 0.85226 0.78527 0.79971 0.76608 1.21744 1.22621 1.18918 1.20549 0.95834 0.84592 0.92415 1.22306 0.99372 0.95324 1.00296 1.21767 1.01135 0.92090 0.84769 1.47976 1.63390 1.09988 1.09793 1.16340 0.78032 0.81746 0.84348 1.90796 1.50163 1.69368 1.32046 1.25072 1.03523 0.92115 0.95756 1.75939 1.19823 1.19655 0.98280 1.78837 1.10417 0.93353 1.22353 1.51311 1.33158 1.15973 1.01966 1.22231 0.97767 0.76122 0.95817 1.22185 1.03931 1.06070 0.88604 1.22305 1.00545 0.96791 1.01865 1.22317 0.89782 1.05681 1.03899 1.74955 1.19740 1.15016 1.01418 1.22688 1.01543 0.93227 0.85358 1.22360 0.99522 0.95597 0.99741 0.98397 0.96538 0.96000 0.94535 0.91197 0.93905 0.91760 0.89345 0.88452 0.90996 0.85457 0.91241 0.91843 0.85244 0.91815 0.92094 0.85203 0.91866 0.88925 0.85771 0.93516 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.38 8.04 127.77 1.03 10.41 16 2 N -0.61 -30.46 2.81 -702.65 -1.98 -32.44 16 3 C -0.25 -13.86 9.62 84.03 0.81 -13.05 16 4 H 0.08 4.00 7.81 -2.91 -0.02 3.98 16 5 C -0.06 -3.35 5.05 84.86 0.43 -2.92 16 6 N -0.94 -56.77 10.66 21.65 0.23 -56.54 16 7 Si 0.97 45.45 29.58 68.60 2.03 47.47 16 8 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 9 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 C 0.17 6.77 2.55 45.01 0.11 6.89 16 12 C -0.13 -4.86 5.34 30.67 0.16 -4.70 16 13 C 0.12 3.72 6.44 86.36 0.56 4.28 16 14 N -0.58 -17.56 2.97 -821.27 -2.44 -20.00 16 15 C 0.61 20.12 7.70 86.83 0.67 20.79 16 16 O -0.55 -20.79 16.52 -3.84 -0.06 -20.85 16 17 C 0.12 3.53 7.81 137.15 1.07 4.60 16 18 N -0.26 -7.19 9.05 -52.37 -0.47 -7.66 16 19 N -0.06 -1.37 12.21 37.02 0.45 -0.92 16 20 N -0.11 -2.22 3.72 -152.28 -0.57 -2.79 16 21 C 0.16 1.69 1.30 3.60 0.00 1.70 16 22 C -0.15 -0.90 7.90 71.98 0.57 -0.33 16 23 C -0.16 -1.18 8.66 71.98 0.62 -0.56 16 24 C -0.16 -1.33 8.66 71.98 0.62 -0.71 16 25 N -0.26 -6.95 11.86 -52.32 -0.62 -7.57 16 26 C 0.09 2.64 6.15 86.51 0.53 3.17 16 27 C -0.13 -4.43 5.34 30.82 0.16 -4.27 16 28 H 0.00 -0.13 7.47 -2.39 -0.02 -0.15 16 29 H 0.02 0.89 7.12 -2.39 -0.02 0.88 16 30 H 0.02 0.98 6.46 -2.39 -0.02 0.97 16 31 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.07 2.67 7.84 -2.39 -0.02 2.65 16 33 H 0.04 1.71 7.72 -2.39 -0.02 1.69 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.09 2.71 7.00 -2.39 -0.02 2.70 16 36 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.13 -0.14 8.14 -2.38 -0.02 -0.16 16 39 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.13 0.01 8.14 -2.38 -0.02 -0.01 16 42 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.13 3.44 4.14 -24.18 -0.10 3.34 16 48 H 0.05 1.69 6.72 -2.39 -0.02 1.67 16 49 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -73.39 387.68 4.78 -68.61 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.85 Total: 7.40 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 7.35 Total: 25.29 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -5.39 Total: -127.92 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.39 4.78 -68.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985443003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.299 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds