Wall clock time and date at job start Tue Mar 31 2020 19:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 C 1.50692 * 109.46996 * 120.00264 * 2 1 3 5 5 N 1.31074 * 126.66301 * 300.16625 * 4 2 1 6 6 N 1.28839 * 107.99234 * 180.24609 * 5 4 2 7 7 N 1.28742 * 109.39679 * 359.75198 * 6 5 4 8 8 N 1.29019 * 108.81280 * 0.02562 * 7 6 5 9 9 C 1.46500 * 126.44309 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47173 * 90.02416 * 9 8 7 11 11 O 1.21280 * 119.99964 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00197 * 180.02562 * 10 9 8 13 13 C 1.46932 * 120.62830 * 359.71036 * 12 10 9 14 14 C 1.53626 * 108.54146 * 126.37323 * 13 12 10 15 15 C 1.53042 * 109.24117 * 54.85772 * 14 13 12 16 16 N 1.46498 * 109.45910 * 178.48916 * 15 14 13 17 17 C 1.46500 * 119.99969 * 60.07036 * 16 15 14 18 18 C 1.36932 * 119.99993 * 240.06467 * 16 15 14 19 19 H 1.07996 * 120.00022 * 23.00076 * 18 16 15 20 20 C 1.38813 * 120.00178 * 202.99194 * 18 16 15 21 21 N 1.31620 * 119.99556 * 11.64655 * 20 18 16 22 22 Si 1.86804 * 120.00194 * 191.63706 * 20 18 16 23 23 H 1.48503 * 109.46859 * 90.00667 * 22 20 18 24 24 H 1.48494 * 109.47314 * 210.00276 * 22 20 18 25 25 H 1.48496 * 109.46960 * 330.00792 * 22 20 18 26 26 C 1.53046 * 109.53791 * 298.51341 * 15 14 13 27 27 C 1.46927 * 120.63446 * 180.02562 * 12 10 9 28 28 H 1.09001 * 109.46974 * 59.99808 * 1 2 3 29 29 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46598 * 300.00071 * 1 2 3 31 31 H 1.09002 * 109.47073 * 240.00156 * 2 1 3 32 32 H 1.08997 * 109.47449 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47204 * 300.00051 * 3 2 1 34 34 H 1.09002 * 109.46870 * 60.00033 * 3 2 1 35 35 H 1.08999 * 109.46918 * 330.01720 * 9 8 7 36 36 H 1.09001 * 109.46803 * 210.02266 * 9 8 7 37 37 H 1.09001 * 109.58699 * 246.20938 * 13 12 10 38 38 H 1.08998 * 109.58481 * 6.63302 * 13 12 10 39 39 H 1.08997 * 109.63194 * 294.86968 * 14 13 12 40 40 H 1.08993 * 109.45708 * 174.74088 * 14 13 12 41 41 H 1.09003 * 109.45760 * 58.52754 * 15 14 13 42 42 H 1.09005 * 109.47249 * 93.84452 * 17 16 15 43 43 H 1.08994 * 109.47484 * 213.84604 * 17 16 15 44 44 H 1.09003 * 109.47090 * 333.85099 * 17 16 15 45 45 H 0.97004 * 119.99834 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.49375 * 301.41253 * 26 15 14 47 47 H 1.08997 * 109.52307 * 181.33662 * 26 15 14 48 48 H 1.09002 * 109.58098 * 353.36512 * 27 12 10 49 49 H 1.08994 * 109.58808 * 113.64654 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7950 -0.3802 2.4765 6 7 2.4015 -1.2269 3.2349 7 7 3.0153 -2.0917 2.5050 8 7 2.8096 -1.8089 1.2631 9 6 3.3289 -2.5422 0.1060 10 6 2.3500 -3.6182 -0.2874 11 8 1.3202 -3.7591 0.3376 12 7 2.6193 -4.4248 -1.3330 13 6 3.8602 -4.2630 -2.1030 14 6 4.5853 -5.6165 -2.1510 15 6 3.6344 -6.6786 -2.7079 16 7 4.3324 -7.9640 -2.7896 17 6 4.8779 -8.5796 -1.5773 18 6 4.4749 -8.5901 -3.9990 19 1 4.4254 -8.0169 -4.9130 20 6 4.6831 -9.9615 -4.0504 21 7 4.5170 -10.6933 -2.9690 22 14 5.1987 -10.7686 -5.6542 23 1 6.6810 -10.7909 -5.7430 24 1 4.6794 -12.1591 -5.6981 25 1 4.6460 -9.9974 -6.7965 26 6 2.4217 -6.8146 -1.7843 27 6 1.6745 -5.4780 -1.7290 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 4.2852 -2.9974 0.3637 36 1 3.4670 -1.8541 -0.7280 37 1 3.6222 -3.9367 -3.1154 38 1 4.4970 -3.5228 -1.6185 39 1 4.8988 -5.8999 -1.1463 40 1 5.4600 -5.5371 -2.7964 41 1 3.3017 -6.3823 -3.7028 42 1 4.1489 -9.2768 -1.1642 43 1 5.7946 -9.1156 -1.8229 44 1 5.0960 -7.8044 -0.8427 45 1 4.6629 -11.6516 -3.0048 46 1 2.7557 -7.0867 -0.7830 47 1 1.7562 -7.5877 -2.1684 48 1 0.8686 -5.5397 -0.9976 49 1 1.2603 -5.2472 -2.7104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985694260.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:40 Heat of formation + Delta-G solvation = 105.953395 kcal Electronic energy + Delta-G solvation = -30083.129995 eV Core-core repulsion = 26083.970680 eV Total energy + Delta-G solvation = -3999.159315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.36136 -40.45229 -37.88642 -36.50519 -35.59882 -35.28852 -32.50045 -31.72494 -31.17671 -30.05979 -28.96654 -27.62920 -26.09568 -25.16273 -24.65410 -23.73274 -22.97909 -22.21905 -21.06832 -20.21654 -18.94599 -18.18847 -17.61977 -16.87627 -16.58957 -16.21427 -15.85083 -15.47209 -15.14216 -14.94997 -14.19546 -14.03351 -13.98455 -13.67406 -13.62336 -13.42600 -13.32654 -12.95462 -12.61777 -12.56885 -12.43702 -12.31286 -12.03669 -11.90006 -11.76302 -11.65624 -11.58081 -11.48311 -11.16492 -11.12853 -10.95573 -10.88576 -10.49468 -10.38519 -10.28965 -10.22902 -10.00663 -9.95010 -9.72532 -8.84077 -8.61809 -6.85170 -5.80208 -3.27751 1.00096 1.57786 2.10983 2.13248 2.71383 3.31672 3.37822 3.39816 3.55936 3.82501 3.87105 4.09279 4.34768 4.39753 4.53656 4.66039 4.70124 4.82211 5.01429 5.15968 5.18960 5.21090 5.21276 5.32363 5.33815 5.37611 5.41586 5.46112 5.53407 5.58598 5.68719 5.75579 5.78046 5.85268 5.89874 5.96502 6.04961 6.15783 6.36068 6.38369 6.67757 6.82411 6.85697 7.08351 7.31244 7.65840 7.72898 7.73039 8.31619 8.46830 9.15230 9.78267 10.27272 11.24409 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.002380 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.089619 B =11763.024102 C =12083.850243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.083 5.083 8 N -0.293 5.293 9 C 0.092 3.908 10 C 0.501 3.499 11 O -0.527 6.527 12 N -0.595 5.595 13 C 0.104 3.896 14 C -0.150 4.150 15 C 0.180 3.820 16 N -0.595 5.595 17 C 0.163 3.837 18 C -0.258 4.258 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.906 5.906 22 Si 0.905 3.095 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.146 4.146 27 C 0.115 3.885 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.027 0.973 43 H 0.043 0.957 44 H -0.003 1.003 45 H 0.253 0.747 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 22.189 0.681 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.078 4.078 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.069 5.069 8 N -0.094 5.094 9 C -0.034 4.034 10 C 0.285 3.715 11 O -0.403 6.403 12 N -0.328 5.328 13 C -0.019 4.019 14 C -0.190 4.190 15 C 0.071 3.929 16 N -0.317 5.317 17 C 0.019 3.981 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.551 5.551 22 Si 0.735 3.265 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.186 4.186 27 C -0.007 4.007 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.015 0.985 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.050 21.700 2.469 22.052 hybrid contribution 0.479 -0.925 -1.798 2.078 sum -2.571 20.775 0.672 20.945 Atomic orbital electron populations 1.21828 0.91716 1.03293 1.03377 1.19786 0.97907 0.95999 0.89540 1.21853 1.01231 0.93390 1.03714 1.26068 0.94775 0.88929 0.97985 1.74932 1.19754 1.21950 0.98321 1.78607 1.06818 0.98980 1.22396 1.78919 1.20153 1.20595 0.87199 1.47907 1.34597 1.19985 1.06890 1.22090 0.99487 0.95673 0.86139 1.20163 0.87212 0.82999 0.81093 1.90800 1.26505 1.70701 1.52292 1.48145 1.22009 1.32937 1.29751 1.22062 0.84362 0.99259 0.96263 1.22593 0.99919 0.93742 1.02745 1.20267 0.89500 0.86791 0.96352 1.43944 1.62741 1.19611 1.05368 1.20752 0.98100 0.93131 0.86122 1.19203 1.44815 0.89851 0.84906 0.91392 1.25052 1.01153 0.96264 0.97099 1.70067 1.52484 1.05224 1.27290 0.86251 0.78377 0.78766 0.83081 1.21497 1.21739 1.20503 1.22545 0.99370 0.94919 1.01778 1.21811 0.91762 0.86612 1.00524 0.90894 0.91861 0.91039 0.89202 0.92356 0.90754 0.90914 0.83876 0.84442 0.90364 0.90697 0.91669 0.90352 0.91766 0.95426 0.93831 0.98480 0.93676 0.92097 0.90301 0.89515 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 2 C -0.01 -0.08 3.26 -91.78 -0.30 -0.37 16 3 C -0.14 -0.78 9.18 37.16 0.34 -0.44 16 4 C 0.20 2.26 6.64 -155.42 -1.03 1.23 16 5 N -0.30 -4.26 12.36 32.70 0.40 -3.86 16 6 N -0.07 -1.19 13.43 60.35 0.81 -0.38 16 7 N -0.08 -1.24 13.29 60.35 0.80 -0.44 16 8 N -0.29 -3.45 2.83 -59.45 -0.17 -3.62 16 9 C 0.09 0.75 4.92 -5.20 -0.03 0.72 16 10 C 0.50 5.90 7.77 -10.99 -0.09 5.81 16 11 O -0.53 -8.55 15.84 5.56 0.09 -8.46 16 12 N -0.59 -6.61 2.97 -172.48 -0.51 -7.12 16 13 C 0.10 0.91 6.37 -3.48 -0.02 0.89 16 14 C -0.15 -1.98 5.34 -26.38 -0.14 -2.12 16 15 C 0.18 3.11 2.55 -67.89 -0.17 2.93 16 16 N -0.60 -13.58 2.81 -173.43 -0.49 -14.07 16 17 C 0.16 3.81 8.03 59.85 0.48 4.29 16 18 C -0.26 -6.61 9.59 -15.06 -0.14 -6.75 16 19 H 0.07 1.68 7.82 -52.49 -0.41 1.27 16 20 C 0.00 0.08 5.12 -17.43 -0.09 -0.01 16 21 N -0.91 -25.54 10.64 55.49 0.59 -24.95 16 22 Si 0.91 20.94 29.57 -169.99 -5.03 15.92 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.15 -2.38 5.34 -26.59 -0.14 -2.52 16 27 C 0.11 1.50 6.43 -3.69 -0.02 1.47 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.46 6.84 -51.93 -0.36 0.10 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.14 0.91 7.70 -51.93 -0.40 0.51 16 36 H 0.14 0.51 6.91 -51.93 -0.36 0.15 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.40 5.93 -51.93 -0.31 0.10 16 39 H 0.06 0.94 6.72 -51.93 -0.35 0.59 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.11 7.86 -51.93 -0.41 0.70 16 42 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 43 H 0.04 1.11 7.22 -51.93 -0.37 0.73 16 44 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 47 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.09 1.24 7.01 -51.93 -0.36 0.87 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -34.37 390.11 -6.45 -40.82 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -7.81 Total: -4.12 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.01 Total: 4.40 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 1.44 Total: -54.43 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.37 -6.45 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985694260.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.775 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds