Wall clock time and date at job start Tue Mar 31 2020 19:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 C 1.50692 * 109.46996 * 120.00264 * 2 1 3 5 5 N 1.31074 * 126.66301 * 300.16625 * 4 2 1 6 6 N 1.28839 * 107.99234 * 180.24609 * 5 4 2 7 7 N 1.28742 * 109.39679 * 359.75198 * 6 5 4 8 8 N 1.29019 * 108.81280 * 0.02562 * 7 6 5 9 9 C 1.46500 * 126.44309 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47173 * 90.02416 * 9 8 7 11 11 O 1.21280 * 119.99964 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00197 * 180.02562 * 10 9 8 13 13 C 1.46932 * 120.62830 * 359.71036 * 12 10 9 14 14 C 1.53626 * 108.54146 * 126.37323 * 13 12 10 15 15 C 1.53042 * 109.24117 * 54.85772 * 14 13 12 16 16 N 1.46498 * 109.45910 * 178.48916 * 15 14 13 17 17 C 1.46500 * 119.99969 * 60.07036 * 16 15 14 18 18 C 1.36932 * 119.99993 * 240.06467 * 16 15 14 19 19 H 1.07996 * 120.00022 * 23.00076 * 18 16 15 20 20 C 1.38813 * 120.00178 * 202.99194 * 18 16 15 21 21 N 1.31620 * 119.99556 * 11.64655 * 20 18 16 22 22 Si 1.86804 * 120.00194 * 191.63706 * 20 18 16 23 23 H 1.48503 * 109.46859 * 90.00667 * 22 20 18 24 24 H 1.48494 * 109.47314 * 210.00276 * 22 20 18 25 25 H 1.48496 * 109.46960 * 330.00792 * 22 20 18 26 26 C 1.53046 * 109.53791 * 298.51341 * 15 14 13 27 27 C 1.46927 * 120.63446 * 180.02562 * 12 10 9 28 28 H 1.09001 * 109.46974 * 59.99808 * 1 2 3 29 29 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46598 * 300.00071 * 1 2 3 31 31 H 1.09002 * 109.47073 * 240.00156 * 2 1 3 32 32 H 1.08997 * 109.47449 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47204 * 300.00051 * 3 2 1 34 34 H 1.09002 * 109.46870 * 60.00033 * 3 2 1 35 35 H 1.08999 * 109.46918 * 330.01720 * 9 8 7 36 36 H 1.09001 * 109.46803 * 210.02266 * 9 8 7 37 37 H 1.09001 * 109.58699 * 246.20938 * 13 12 10 38 38 H 1.08998 * 109.58481 * 6.63302 * 13 12 10 39 39 H 1.08997 * 109.63194 * 294.86968 * 14 13 12 40 40 H 1.08993 * 109.45708 * 174.74088 * 14 13 12 41 41 H 1.09003 * 109.45760 * 58.52754 * 15 14 13 42 42 H 1.09005 * 109.47249 * 93.84452 * 17 16 15 43 43 H 1.08994 * 109.47484 * 213.84604 * 17 16 15 44 44 H 1.09003 * 109.47090 * 333.85099 * 17 16 15 45 45 H 0.97004 * 119.99834 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.49375 * 301.41253 * 26 15 14 47 47 H 1.08997 * 109.52307 * 181.33662 * 26 15 14 48 48 H 1.09002 * 109.58098 * 353.36512 * 27 12 10 49 49 H 1.08994 * 109.58808 * 113.64654 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7950 -0.3802 2.4765 6 7 2.4015 -1.2269 3.2349 7 7 3.0153 -2.0917 2.5050 8 7 2.8096 -1.8089 1.2631 9 6 3.3289 -2.5422 0.1060 10 6 2.3500 -3.6182 -0.2874 11 8 1.3202 -3.7591 0.3376 12 7 2.6193 -4.4248 -1.3330 13 6 3.8602 -4.2630 -2.1030 14 6 4.5853 -5.6165 -2.1510 15 6 3.6344 -6.6786 -2.7079 16 7 4.3324 -7.9640 -2.7896 17 6 4.8779 -8.5796 -1.5773 18 6 4.4749 -8.5901 -3.9990 19 1 4.4254 -8.0169 -4.9130 20 6 4.6831 -9.9615 -4.0504 21 7 4.5170 -10.6933 -2.9690 22 14 5.1987 -10.7686 -5.6542 23 1 6.6810 -10.7909 -5.7430 24 1 4.6794 -12.1591 -5.6981 25 1 4.6460 -9.9974 -6.7965 26 6 2.4217 -6.8146 -1.7843 27 6 1.6745 -5.4780 -1.7290 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 4.2852 -2.9974 0.3637 36 1 3.4670 -1.8541 -0.7280 37 1 3.6222 -3.9367 -3.1154 38 1 4.4970 -3.5228 -1.6185 39 1 4.8988 -5.8999 -1.1463 40 1 5.4600 -5.5371 -2.7964 41 1 3.3017 -6.3823 -3.7028 42 1 4.1489 -9.2768 -1.1642 43 1 5.7946 -9.1156 -1.8229 44 1 5.0960 -7.8044 -0.8427 45 1 4.6629 -11.6516 -3.0048 46 1 2.7557 -7.0867 -0.7830 47 1 1.7562 -7.5877 -2.1684 48 1 0.8686 -5.5397 -0.9976 49 1 1.2603 -5.2472 -2.7104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985694260.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:39 Heat of formation + Delta-G solvation = 82.571333 kcal Electronic energy + Delta-G solvation = -30084.143918 eV Core-core repulsion = 26083.970680 eV Total energy + Delta-G solvation = -4000.173238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.29565 -41.42173 -39.12358 -37.16939 -36.79793 -36.44461 -34.04498 -32.70047 -32.22737 -31.52330 -29.92981 -28.09302 -28.03376 -26.45273 -25.47487 -24.79507 -24.08627 -23.58864 -21.86093 -21.29120 -20.07284 -19.05596 -18.76041 -18.50100 -17.59855 -16.98298 -16.95134 -16.73806 -16.28707 -15.72902 -15.56278 -15.16510 -15.13503 -14.83794 -14.72948 -14.38179 -14.17940 -13.99524 -13.94450 -13.61374 -13.23782 -13.20204 -13.09417 -13.06973 -12.79139 -12.68670 -12.66546 -12.47350 -12.34326 -12.28517 -12.26816 -12.19893 -12.05505 -11.88091 -11.82427 -11.62751 -11.27707 -11.15558 -10.90970 -10.60783 -9.80277 -8.75736 -7.80346 -5.28866 0.09539 0.82664 1.13569 1.26869 1.48261 1.49011 1.57498 1.85020 2.52076 2.88521 3.09488 3.14593 3.33771 3.57912 3.62563 3.79999 3.91724 4.03429 4.06992 4.09040 4.16888 4.19255 4.27738 4.38474 4.39800 4.56698 4.63671 4.69727 4.77605 4.79594 4.83411 4.85475 4.91938 4.92980 4.95462 4.98342 5.09861 5.16551 5.26160 5.29876 5.33118 5.38400 5.50328 5.60524 5.68018 5.73071 6.20718 6.35677 6.84861 7.17289 7.48695 7.90873 8.35189 9.22945 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.002380 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.089619 B =11763.024102 C =12083.850243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.011 4.011 3 C -0.139 4.139 4 C 0.209 3.791 5 N -0.329 5.329 6 N -0.108 5.108 7 N -0.107 5.107 8 N -0.292 5.292 9 C 0.087 3.913 10 C 0.501 3.499 11 O -0.579 6.579 12 N -0.592 5.592 13 C 0.108 3.892 14 C -0.141 4.141 15 C 0.172 3.828 16 N -0.611 5.611 17 C 0.183 3.817 18 C -0.255 4.255 19 H 0.079 0.921 20 C -0.059 4.059 21 N -0.944 5.944 22 Si 0.967 3.033 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.263 1.263 26 C -0.135 4.135 27 C 0.127 3.873 28 H 0.103 0.897 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.168 0.832 36 H 0.197 0.803 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.070 0.930 42 H -0.008 1.008 43 H 0.014 0.986 44 H 0.026 0.974 45 H 0.245 0.755 46 H 0.036 0.964 47 H 0.049 0.951 48 H 0.069 0.931 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 25.712 -2.127 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.197 4.197 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.093 5.093 8 N -0.093 5.093 9 C -0.037 4.037 10 C 0.288 3.712 11 O -0.459 6.459 12 N -0.324 5.324 13 C -0.014 4.014 14 C -0.181 4.181 15 C 0.065 3.935 16 N -0.333 5.333 17 C 0.038 3.962 18 C -0.385 4.385 19 H 0.097 0.903 20 C -0.254 4.254 21 N -0.591 5.591 22 Si 0.796 3.204 23 H -0.215 1.215 24 H -0.230 1.230 25 H -0.188 1.188 26 C -0.175 4.175 27 C 0.004 3.996 28 H 0.121 0.879 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.186 0.814 36 H 0.213 0.787 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.010 0.990 43 H 0.033 0.967 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.992 25.279 -0.368 25.360 hybrid contribution 0.095 -1.995 -0.956 2.214 sum -1.897 23.284 -1.324 23.398 Atomic orbital electron populations 1.21823 0.92197 1.01847 1.04165 1.20147 0.97408 0.97052 0.88661 1.21855 1.01713 0.91988 1.04188 1.26855 0.93257 0.88380 0.98357 1.74847 1.20602 1.22548 0.99828 1.78564 1.07982 0.99916 1.23669 1.78813 1.20854 1.20907 0.88756 1.48138 1.34354 1.20071 1.06691 1.22607 0.98597 0.95803 0.86679 1.20744 0.87041 0.83351 0.80063 1.90799 1.29040 1.72245 1.53784 1.48159 1.22334 1.32014 1.29863 1.22299 0.83322 0.97422 0.98324 1.22415 0.99376 0.94785 1.01542 1.20587 0.90254 0.85421 0.97219 1.44208 1.63580 1.21267 1.04283 1.20385 0.95693 0.93101 0.87062 1.19629 1.42564 0.90025 0.86286 0.90303 1.25826 1.02419 0.97201 0.99912 1.70256 1.54754 1.04810 1.29309 0.85258 0.77717 0.77224 0.80206 1.21483 1.22992 1.18792 1.22328 0.98934 0.96389 0.99872 1.21525 0.91327 0.85453 1.01327 0.87874 0.94327 0.92554 0.85835 0.91553 0.88047 0.92708 0.81421 0.78653 0.87428 0.85735 0.93014 0.89805 0.91190 0.99017 0.96733 0.95525 0.94623 0.94495 0.93218 0.91203 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.18 71.98 0.66 -1.14 16 2 C -0.01 -0.12 3.26 -11.54 -0.04 -0.16 16 3 C -0.14 -0.98 9.18 71.98 0.66 -0.32 16 4 C 0.21 4.29 6.64 138.13 0.92 5.21 16 5 N -0.33 -9.26 12.36 -50.45 -0.62 -9.88 16 6 N -0.11 -3.47 13.43 37.01 0.50 -2.98 16 7 N -0.11 -3.13 13.29 37.02 0.49 -2.64 16 8 N -0.29 -6.13 2.83 -341.99 -0.97 -7.10 16 9 C 0.09 0.99 4.92 85.63 0.42 1.41 16 10 C 0.50 10.15 7.77 87.66 0.68 10.84 16 11 O -0.58 -18.19 15.84 -3.03 -0.05 -18.24 16 12 N -0.59 -10.89 2.97 -817.99 -2.43 -13.32 16 13 C 0.11 1.27 6.37 86.51 0.55 1.82 16 14 C -0.14 -3.24 5.34 30.82 0.16 -3.07 16 15 C 0.17 5.66 2.55 45.02 0.11 5.78 16 16 N -0.61 -27.89 2.81 -702.62 -1.97 -29.86 16 17 C 0.18 8.76 8.03 127.77 1.03 9.78 16 18 C -0.25 -12.96 9.59 84.03 0.81 -12.16 16 19 H 0.08 3.77 7.82 -2.91 -0.02 3.75 16 20 C -0.06 -3.19 5.12 84.86 0.43 -2.76 16 21 N -0.94 -55.28 10.64 21.65 0.23 -55.05 16 22 Si 0.97 43.41 29.57 68.60 2.03 45.44 16 23 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 C -0.13 -4.40 5.34 30.69 0.16 -4.23 16 27 C 0.13 3.09 6.43 86.37 0.56 3.64 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.12 0.50 6.84 -2.39 -0.02 0.48 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.17 1.19 7.70 -2.39 -0.02 1.17 16 36 H 0.20 -0.10 6.91 -2.39 -0.02 -0.12 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.12 0.34 5.93 -2.39 -0.01 0.33 16 39 H 0.05 1.34 6.72 -2.39 -0.02 1.32 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 2.23 7.86 -2.39 -0.02 2.21 16 42 H -0.01 -0.46 7.42 -2.38 -0.02 -0.48 16 43 H 0.01 0.74 7.22 -2.39 -0.02 0.72 16 44 H 0.03 1.08 6.46 -2.39 -0.02 1.07 16 45 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.04 1.35 7.72 -2.39 -0.02 1.34 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.07 1.98 7.01 -2.39 -0.02 1.97 16 49 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -83.20 390.11 5.27 -77.93 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: 0.95 Total: 1.07 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 7.12 Total: 14.64 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -4.77 Total: -120.83 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -83.20 5.27 -77.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985694260.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.498 kcal (2) G-P(sol) polarization free energy of solvation -83.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds