Wall clock time and date at job start Tue Mar 31 2020 21:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 H 1.09002 * 110.72444 * 144.41096 * 4 2 1 6 6 N 1.46504 * 110.71992 * 21.14280 * 4 2 1 7 7 C 1.36935 * 120.00499 * 155.00094 * 6 4 2 8 8 H 1.08004 * 119.99410 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00015 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99815 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00199 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.46757 * 90.00309 * 11 9 7 13 13 H 1.48501 * 109.47268 * 210.00118 * 11 9 7 14 14 H 1.48499 * 109.47144 * 330.00324 * 11 9 7 15 15 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 16 16 C 1.54907 * 101.58028 * 324.49859 * 15 4 2 17 17 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 18 18 C 1.34779 * 125.64538 * 300.42781 * 17 2 1 19 19 O 1.21283 * 120.00106 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99863 * 179.97438 * 18 17 2 21 21 C 1.50699 * 109.47078 * 180.02562 * 20 18 17 22 22 N 1.33315 * 126.54908 * 269.68759 * 21 20 18 23 23 N 1.28995 * 107.35587 * 179.83859 * 22 21 20 24 24 N 1.28785 * 108.72377 * 0.43016 * 23 22 21 25 25 C 1.46496 * 125.44618 * 179.72931 * 24 23 22 26 26 C 1.53004 * 109.47183 * 239.99985 * 25 24 23 27 27 C 1.52996 * 109.47390 * 359.97438 * 25 24 23 28 28 C 1.52995 * 109.47263 * 119.99921 * 25 24 23 29 29 N 1.28877 * 109.10099 * 359.72990 * 24 23 22 30 30 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 33 33 H 0.97002 * 119.99396 * 334.99695 * 6 4 2 34 34 H 0.97005 * 120.00598 * 179.97438 * 10 9 7 35 35 H 1.09000 * 111.00258 * 82.56702 * 15 4 2 36 36 H 1.08999 * 111.00896 * 206.38476 * 15 4 2 37 37 H 1.09001 * 110.36979 * 155.84714 * 16 15 4 38 38 H 1.08999 * 110.36689 * 278.06189 * 16 15 4 39 39 H 1.09005 * 109.47279 * 300.00172 * 20 18 17 40 40 H 1.09001 * 109.47052 * 60.00255 * 20 18 17 41 41 H 1.09002 * 109.46861 * 60.00053 * 26 25 24 42 42 H 1.08995 * 109.47167 * 180.02562 * 26 25 24 43 43 H 1.08994 * 109.47017 * 300.00212 * 26 25 24 44 44 H 1.09005 * 109.47502 * 60.00118 * 27 25 24 45 45 H 1.09007 * 109.47679 * 180.02562 * 27 25 24 46 46 H 1.08996 * 109.47570 * 300.00020 * 27 25 24 47 47 H 1.09007 * 109.47101 * 59.99981 * 28 25 24 48 48 H 1.09007 * 109.47470 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.47471 * 299.99899 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.9657 -0.2809 -1.6186 6 7 1.0294 -0.7994 -2.2886 7 6 1.3954 -0.9337 -3.6013 8 1 2.4403 -1.0012 -3.8663 9 6 0.4237 -0.9820 -4.5914 10 7 0.7756 -1.1117 -5.8530 11 14 -1.3834 -0.8646 -4.1330 12 1 -1.8035 0.5597 -4.1373 13 1 -2.1945 -1.6228 -5.1191 14 1 -1.5887 -1.4372 -2.7784 15 6 2.3519 -2.1685 -0.6954 16 6 2.8568 -1.8508 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.7755 -0.3878 2.4652 19 8 1.0788 0.5721 2.7188 20 6 2.3557 -1.2143 3.5837 21 6 1.9230 -0.6411 4.9086 22 7 2.5665 0.2833 5.6218 23 7 1.8699 0.5028 6.6851 24 7 0.8286 -0.2546 6.6608 25 6 -0.2089 -0.3060 7.6937 26 6 -0.2854 -1.7214 8.2698 27 6 0.1345 0.6809 8.8112 28 6 -1.5593 0.0682 7.0794 29 7 0.8453 -0.9601 5.5824 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.4980 -0.8990 32 1 -0.3634 0.5296 0.8808 33 1 0.0910 -0.7384 -2.0506 34 1 0.0966 -1.1458 -6.5449 35 1 1.4452 -2.7727 -0.6642 36 1 3.1266 -2.6603 -1.2837 37 1 2.7088 -2.7100 1.3885 38 1 3.9096 -1.5695 0.7110 39 1 2.0000 -2.2412 3.4990 40 1 3.4437 -1.2002 3.5193 41 1 0.6766 -1.9879 8.7075 42 1 -1.0576 -1.7597 9.0380 43 1 -0.5299 -2.4248 7.4740 44 1 0.1893 1.6895 8.4012 45 1 -0.6372 0.6424 9.5801 46 1 1.0964 0.4140 9.2488 47 1 -1.8038 -0.6353 6.2835 48 1 -2.3314 0.0295 7.8479 49 1 -1.5049 1.0765 6.6690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986304530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:47 Heat of formation + Delta-G solvation = 114.753996 kcal Electronic energy + Delta-G solvation = -29631.093716 eV Core-core repulsion = 25632.316024 eV Total energy + Delta-G solvation = -3998.777693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.46617 -40.14541 -38.10683 -37.58713 -34.37049 -33.70389 -33.34410 -31.84918 -30.85969 -30.16122 -28.78773 -28.07976 -27.88878 -25.49485 -24.77047 -23.65852 -22.75504 -22.19611 -20.88784 -19.76143 -18.78947 -18.00496 -17.54440 -17.32692 -16.76175 -16.03350 -15.54901 -15.01845 -14.78882 -14.65992 -14.37511 -14.16877 -14.12324 -13.80515 -13.45532 -13.31829 -13.02731 -12.98104 -12.86229 -12.64110 -12.44213 -12.38279 -12.18984 -12.13064 -11.99842 -11.96442 -11.72563 -11.56424 -11.44902 -11.18736 -11.01688 -10.94661 -10.90474 -10.53196 -10.40600 -10.34490 -10.07472 -9.70974 -9.54712 -8.99980 -8.52403 -7.35486 -5.83327 -3.20112 1.14443 1.64475 2.01504 2.65495 3.04452 3.33418 3.36493 3.42110 3.59951 3.88816 4.00843 4.11279 4.36080 4.48514 4.53392 4.84835 4.88758 4.90774 4.95334 4.99189 5.04570 5.09897 5.12466 5.13357 5.14381 5.28209 5.39871 5.40727 5.47186 5.52270 5.52995 5.56219 5.62227 5.66878 5.78106 5.83154 5.89922 6.00847 6.09759 6.16302 6.37469 6.48250 6.55009 6.56289 6.82348 7.61946 7.91812 8.20377 8.29112 8.35477 9.12764 9.85093 10.03807 11.34504 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.002375 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.208936 B =11784.354001 C =12469.600336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.076 0.924 4 C 0.179 3.821 5 H 0.076 0.924 6 N -0.740 5.740 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.878 3.122 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.154 4.154 16 C 0.094 3.906 17 N -0.608 5.608 18 C 0.535 3.465 19 O -0.535 6.535 20 C -0.040 4.040 21 C 0.188 3.812 22 N -0.277 5.277 23 N -0.064 5.064 24 N -0.130 5.130 25 C 0.179 3.821 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.159 4.159 29 N -0.295 5.295 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.367 0.633 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 -2.840 30.350 30.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.068 3.932 5 H 0.094 0.906 6 N -0.384 5.384 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.577 5.577 11 Si 0.708 3.292 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.195 4.195 16 C -0.029 4.029 17 N -0.342 5.342 18 C 0.322 3.678 19 O -0.412 6.412 20 C -0.083 4.083 21 C -0.095 4.095 22 N -0.147 5.147 23 N -0.056 5.056 24 N -0.044 5.044 25 C 0.098 3.902 26 C -0.216 4.216 27 C -0.211 4.211 28 C -0.218 4.218 29 N -0.145 5.145 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.204 0.796 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.411 -1.934 30.886 30.950 hybrid contribution -1.334 -0.340 -0.342 1.419 sum -1.746 -2.275 30.544 30.679 Atomic orbital electron populations 1.22051 0.95241 1.02180 1.02542 1.21883 0.94927 0.96248 0.84655 0.90592 1.21157 0.93068 0.92312 0.86676 0.90580 1.42969 1.03533 1.88732 1.03203 1.19067 0.94892 1.42954 0.80882 0.88979 1.24650 0.97306 1.01714 0.95090 1.69689 1.32570 1.56578 0.98874 0.86665 0.86981 0.78034 0.77539 1.20865 1.21566 1.20252 1.23523 1.01949 1.00946 0.93052 1.22465 0.94864 0.88284 0.97282 1.48505 1.50394 1.30678 1.04625 1.19683 0.81034 0.84993 0.82122 1.90716 1.38562 1.28792 1.83093 1.19842 1.03549 1.00169 0.84731 1.24599 0.89850 0.96326 0.98773 1.75797 1.24021 1.14740 1.00187 1.78881 0.95326 1.14417 1.16973 1.50405 1.17171 1.22560 1.14284 1.21366 0.84787 0.99426 0.84612 1.22224 1.03791 0.93258 1.02322 1.22085 1.03641 0.98934 0.96392 1.22237 0.93503 1.03513 1.02529 1.74537 1.22074 1.20246 0.97620 0.92585 0.91041 0.91748 0.79623 0.92946 0.90788 0.89960 0.91038 0.91020 0.86121 0.85718 0.91449 0.89208 0.90408 0.90558 0.89302 0.90641 0.90366 0.89256 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 7.93 37.16 0.29 -2.56 16 2 C 0.13 2.11 3.48 -66.96 -0.23 1.88 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.18 3.22 3.48 -66.10 -0.23 2.99 16 5 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 6 N -0.74 -16.65 4.74 -51.65 -0.24 -16.90 16 7 C -0.25 -6.69 10.44 -15.06 -0.16 -6.85 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.51 13.97 55.49 0.78 -27.74 16 11 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 15 C -0.15 -2.27 6.77 -24.59 -0.17 -2.43 16 16 C 0.09 1.07 6.69 -2.53 -0.02 1.05 16 17 N -0.61 -8.63 3.08 -163.02 -0.50 -9.13 16 18 C 0.54 7.95 7.62 -10.99 -0.08 7.86 16 19 O -0.53 -10.10 14.94 5.56 0.08 -10.02 16 20 C -0.04 -0.44 5.33 -29.04 -0.15 -0.60 16 21 C 0.19 2.57 6.86 -156.63 -1.07 1.50 16 22 N -0.28 -4.15 12.50 32.44 0.41 -3.74 16 23 N -0.06 -0.86 12.24 60.35 0.74 -0.13 16 24 N -0.13 -1.52 3.73 0.48 0.00 -1.52 16 25 C 0.18 1.31 1.30 -131.82 -0.17 1.14 16 26 C -0.16 -0.83 8.66 37.16 0.32 -0.51 16 27 C -0.15 -0.83 7.91 37.16 0.29 -0.53 16 28 C -0.16 -1.07 8.66 37.16 0.32 -0.75 16 29 N -0.29 -3.89 11.83 32.46 0.38 -3.50 16 30 H 0.06 0.98 8.03 -51.93 -0.42 0.56 16 31 H 0.07 1.32 6.76 -51.93 -0.35 0.97 16 32 H 0.06 1.16 6.77 -51.93 -0.35 0.81 16 33 H 0.37 8.26 2.92 -40.82 -0.12 8.14 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.12 1.03 7.85 -51.93 -0.41 0.62 16 40 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -35.59 394.41 -6.25 -41.83 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.96 Total: 5.58 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.15 Total: 2.34 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 1.56 Total: -62.65 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.59 -6.25 -41.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986304530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.587 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds