Wall clock time and date at job start Tue Mar 31 2020 21:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 H 1.09002 * 110.72444 * 144.41096 * 4 2 1 6 6 N 1.46504 * 110.71992 * 21.14280 * 4 2 1 7 7 C 1.36935 * 120.00499 * 155.00094 * 6 4 2 8 8 H 1.08004 * 119.99410 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00015 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99815 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00199 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.46757 * 90.00309 * 11 9 7 13 13 H 1.48501 * 109.47268 * 210.00118 * 11 9 7 14 14 H 1.48499 * 109.47144 * 330.00324 * 11 9 7 15 15 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 16 16 C 1.54907 * 101.58028 * 324.49859 * 15 4 2 17 17 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 18 18 C 1.34779 * 125.64538 * 300.42781 * 17 2 1 19 19 O 1.21283 * 120.00106 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99863 * 179.97438 * 18 17 2 21 21 C 1.50699 * 109.47078 * 180.02562 * 20 18 17 22 22 N 1.33315 * 126.54908 * 269.68759 * 21 20 18 23 23 N 1.28995 * 107.35587 * 179.83859 * 22 21 20 24 24 N 1.28785 * 108.72377 * 0.43016 * 23 22 21 25 25 C 1.46496 * 125.44618 * 179.72931 * 24 23 22 26 26 C 1.53004 * 109.47183 * 239.99985 * 25 24 23 27 27 C 1.52996 * 109.47390 * 359.97438 * 25 24 23 28 28 C 1.52995 * 109.47263 * 119.99921 * 25 24 23 29 29 N 1.28877 * 109.10099 * 359.72990 * 24 23 22 30 30 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 33 33 H 0.97002 * 119.99396 * 334.99695 * 6 4 2 34 34 H 0.97005 * 120.00598 * 179.97438 * 10 9 7 35 35 H 1.09000 * 111.00258 * 82.56702 * 15 4 2 36 36 H 1.08999 * 111.00896 * 206.38476 * 15 4 2 37 37 H 1.09001 * 110.36979 * 155.84714 * 16 15 4 38 38 H 1.08999 * 110.36689 * 278.06189 * 16 15 4 39 39 H 1.09005 * 109.47279 * 300.00172 * 20 18 17 40 40 H 1.09001 * 109.47052 * 60.00255 * 20 18 17 41 41 H 1.09002 * 109.46861 * 60.00053 * 26 25 24 42 42 H 1.08995 * 109.47167 * 180.02562 * 26 25 24 43 43 H 1.08994 * 109.47017 * 300.00212 * 26 25 24 44 44 H 1.09005 * 109.47502 * 60.00118 * 27 25 24 45 45 H 1.09007 * 109.47679 * 180.02562 * 27 25 24 46 46 H 1.08996 * 109.47570 * 300.00020 * 27 25 24 47 47 H 1.09007 * 109.47101 * 59.99981 * 28 25 24 48 48 H 1.09007 * 109.47470 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.47471 * 299.99899 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.9657 -0.2809 -1.6186 6 7 1.0294 -0.7994 -2.2886 7 6 1.3954 -0.9337 -3.6013 8 1 2.4403 -1.0012 -3.8663 9 6 0.4237 -0.9820 -4.5914 10 7 0.7756 -1.1117 -5.8530 11 14 -1.3834 -0.8646 -4.1330 12 1 -1.8035 0.5597 -4.1373 13 1 -2.1945 -1.6228 -5.1191 14 1 -1.5887 -1.4372 -2.7784 15 6 2.3519 -2.1685 -0.6954 16 6 2.8568 -1.8508 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.7755 -0.3878 2.4652 19 8 1.0788 0.5721 2.7188 20 6 2.3557 -1.2143 3.5837 21 6 1.9230 -0.6411 4.9086 22 7 2.5665 0.2833 5.6218 23 7 1.8699 0.5028 6.6851 24 7 0.8286 -0.2546 6.6608 25 6 -0.2089 -0.3060 7.6937 26 6 -0.2854 -1.7214 8.2698 27 6 0.1345 0.6809 8.8112 28 6 -1.5593 0.0682 7.0794 29 7 0.8453 -0.9601 5.5824 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.4980 -0.8990 32 1 -0.3634 0.5296 0.8808 33 1 0.0910 -0.7384 -2.0506 34 1 0.0966 -1.1458 -6.5449 35 1 1.4452 -2.7727 -0.6642 36 1 3.1266 -2.6603 -1.2837 37 1 2.7088 -2.7100 1.3885 38 1 3.9096 -1.5695 0.7110 39 1 2.0000 -2.2412 3.4990 40 1 3.4437 -1.2002 3.5193 41 1 0.6766 -1.9879 8.7075 42 1 -1.0576 -1.7597 9.0380 43 1 -0.5299 -2.4248 7.4740 44 1 0.1893 1.6895 8.4012 45 1 -0.6372 0.6424 9.5801 46 1 1.0964 0.4140 9.2488 47 1 -1.8038 -0.6353 6.2835 48 1 -2.3314 0.0295 7.8479 49 1 -1.5049 1.0765 6.6690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986304530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:46 Heat of formation + Delta-G solvation = 89.623114 kcal Electronic energy + Delta-G solvation = -29632.183473 eV Core-core repulsion = 25632.316024 eV Total energy + Delta-G solvation = -3999.867450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.39576 -41.35793 -39.11313 -38.52917 -36.04827 -34.69398 -34.24622 -33.61721 -32.16356 -31.53396 -29.94596 -28.53763 -28.40415 -26.92614 -25.65879 -25.20486 -24.17758 -23.24016 -21.65599 -21.07898 -20.12304 -19.83530 -18.58315 -18.00664 -17.83317 -17.24566 -16.71871 -16.54183 -15.93102 -15.63390 -15.51561 -15.17609 -15.14325 -14.95004 -14.69451 -14.47911 -14.12108 -13.97444 -13.64178 -13.51092 -13.44612 -13.29547 -13.24101 -13.10645 -13.06093 -12.90420 -12.87258 -12.85878 -12.59251 -12.56519 -12.17393 -12.13702 -11.97012 -11.94852 -11.86699 -11.72549 -11.53849 -11.32308 -10.97522 -10.79108 -9.70325 -9.31254 -8.02013 -5.35078 0.21080 0.90560 1.03386 1.35842 1.37902 1.44233 1.54842 1.94594 2.46738 2.79028 3.14632 3.27023 3.44954 3.51077 3.56218 3.58679 3.66176 3.78910 3.90183 4.12124 4.19618 4.34639 4.36322 4.40569 4.44717 4.49400 4.51103 4.52427 4.59110 4.59379 4.64441 4.70543 4.71856 4.75520 4.82974 4.85967 5.00451 5.02441 5.09861 5.12662 5.20874 5.27072 5.31264 5.34844 5.48392 5.78884 6.22129 6.50995 7.05725 7.08466 7.32850 7.82776 8.00562 9.19027 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.002375 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.208936 B =11784.354001 C =12469.600336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 H 0.065 0.935 4 C 0.169 3.831 5 H 0.072 0.928 6 N -0.746 5.746 7 C -0.224 4.224 8 H 0.067 0.933 9 C -0.059 4.059 10 N -0.980 5.980 11 Si 0.938 3.062 12 H -0.282 1.282 13 H -0.295 1.295 14 H -0.254 1.254 15 C -0.146 4.146 16 C 0.100 3.900 17 N -0.605 5.605 18 C 0.534 3.466 19 O -0.583 6.583 20 C -0.033 4.033 21 C 0.175 3.825 22 N -0.308 5.308 23 N -0.078 5.078 24 N -0.119 5.119 25 C 0.162 3.838 26 C -0.151 4.151 27 C -0.149 4.149 28 C -0.156 4.156 29 N -0.305 5.305 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.368 0.632 34 H 0.257 0.743 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.064 0.936 42 H 0.124 0.876 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.125 0.875 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.126 0.874 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -4.405 33.647 33.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.028 3.972 3 H 0.083 0.917 4 C 0.059 3.941 5 H 0.090 0.910 6 N -0.391 5.391 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.251 4.251 10 N -0.630 5.630 11 Si 0.767 3.233 12 H -0.209 1.209 13 H -0.221 1.221 14 H -0.179 1.179 15 C -0.187 4.187 16 C -0.022 4.022 17 N -0.338 5.338 18 C 0.322 3.678 19 O -0.463 6.463 20 C -0.075 4.075 21 C -0.108 4.108 22 N -0.178 5.178 23 N -0.070 5.070 24 N -0.035 5.035 25 C 0.083 3.917 26 C -0.210 4.210 27 C -0.207 4.207 28 C -0.214 4.214 29 N -0.156 5.156 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.205 0.795 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.083 0.917 42 H 0.142 0.858 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.145 0.855 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.748 -3.517 34.258 34.446 hybrid contribution -1.179 0.188 -1.270 1.743 sum -1.927 -3.329 32.988 33.211 Atomic orbital electron populations 1.21944 0.95933 1.01871 1.01472 1.21600 0.94293 0.95956 0.85384 0.91665 1.21372 0.91727 0.94885 0.86097 0.91034 1.42971 1.04622 1.88962 1.02539 1.19051 0.93650 1.39983 0.82779 0.91490 1.25357 1.01621 1.03054 0.95058 1.69848 1.33718 1.59411 1.00050 0.85665 0.81777 0.77848 0.78053 1.20887 1.22138 1.17913 1.23354 1.01984 0.98020 0.95325 1.22673 0.95461 0.88612 0.95425 1.48505 1.50422 1.31038 1.03847 1.20329 0.80179 0.84625 0.82668 1.90702 1.40775 1.31047 1.83768 1.20002 1.05169 1.00531 0.81749 1.25085 0.89875 0.96239 0.99624 1.75746 1.25245 1.15776 1.00997 1.78800 0.96117 1.15095 1.17016 1.50942 1.17078 1.21177 1.14327 1.21988 0.83983 1.01442 0.84296 1.22242 1.04826 0.91227 1.02663 1.22133 1.04763 0.97381 0.96400 1.22260 0.94256 1.01704 1.03195 1.74506 1.22055 1.20855 0.98192 0.92422 0.92351 0.92476 0.79518 0.93408 0.91655 0.89370 0.86947 0.88380 0.82845 0.82656 0.91731 0.85784 0.91490 0.92136 0.85706 0.91031 0.91944 0.85519 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 7.93 71.98 0.57 -4.75 16 2 C 0.13 4.28 3.48 45.34 0.16 4.44 16 3 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 4 C 0.17 5.86 3.48 46.18 0.16 6.02 16 5 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 6 N -0.75 -33.18 4.74 -317.33 -1.50 -34.68 16 7 C -0.22 -12.17 10.44 84.03 0.88 -11.30 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 9 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 10 N -0.98 -61.65 13.97 21.65 0.30 -61.35 16 11 Si 0.94 45.17 27.74 68.60 1.90 47.07 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 14 H -0.25 -11.14 6.52 99.48 0.65 -10.49 16 15 C -0.15 -3.93 6.77 31.98 0.22 -3.71 16 16 C 0.10 1.84 6.69 86.85 0.58 2.42 16 17 N -0.60 -15.62 3.08 -788.06 -2.43 -18.04 16 18 C 0.53 14.74 7.62 87.66 0.67 15.41 16 19 O -0.58 -21.78 14.94 -3.04 -0.05 -21.83 16 20 C -0.03 -0.62 5.33 29.10 0.16 -0.46 16 21 C 0.17 4.55 6.86 138.55 0.95 5.50 16 22 N -0.31 -9.05 12.50 -51.26 -0.64 -9.69 16 23 N -0.08 -2.11 12.24 37.02 0.45 -1.65 16 24 N -0.12 -2.69 3.73 -152.41 -0.57 -3.26 16 25 C 0.16 2.10 1.30 3.60 0.00 2.11 16 26 C -0.15 -1.21 8.66 71.98 0.62 -0.59 16 27 C -0.15 -1.34 7.91 71.98 0.57 -0.77 16 28 C -0.16 -1.86 8.66 71.98 0.62 -1.24 16 29 N -0.31 -7.71 11.83 -51.20 -0.61 -8.32 16 30 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16 31 H 0.06 2.14 6.76 -2.39 -0.02 2.12 16 32 H 0.06 2.05 6.77 -2.38 -0.02 2.04 16 33 H 0.37 16.20 2.92 -92.71 -0.27 15.93 16 34 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.11 1.27 7.48 -2.39 -0.02 1.25 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.15 1.89 7.85 -2.38 -0.02 1.87 16 40 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 49 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -81.48 394.41 4.11 -77.36 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.62 Total: 24.28 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.63 Total: 10.12 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -4.99 Total: -137.00 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Total: -81.48 4.11 -77.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986304530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.987 kcal (2) G-P(sol) polarization free energy of solvation -81.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds