Wall clock time and date at job start Tue Mar 31 2020 21:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.00500 * 2 1 4 4 C 1.54325 * 109.88206 * 121.09617 * 2 1 3 5 5 H 1.08998 * 110.87292 * 260.04523 * 4 2 1 6 6 N 1.46498 * 110.71803 * 23.24684 * 4 2 1 7 7 C 1.36941 * 119.99923 * 264.40528 * 6 4 2 8 8 H 1.08003 * 119.99943 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00010 * 180.02562 * 7 6 4 10 10 N 1.31621 * 120.00451 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00169 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47116 * 179.97438 * 11 9 7 13 13 H 1.48499 * 109.46673 * 299.99472 * 11 9 7 14 14 H 1.48497 * 109.47120 * 59.99215 * 11 9 7 15 15 C 1.55160 * 102.94487 * 141.60932 * 4 2 1 16 16 C 1.54916 * 101.57987 * 324.49849 * 15 4 2 17 17 N 1.47023 * 109.88440 * 238.90325 * 2 1 3 18 18 C 1.34775 * 125.65027 * 61.68761 * 17 2 1 19 19 O 1.21285 * 119.99757 * 359.97438 * 18 17 2 20 20 C 1.50696 * 120.00361 * 179.97438 * 18 17 2 21 21 C 1.50702 * 109.47354 * 180.02562 * 20 18 17 22 22 N 1.33311 * 126.54891 * 269.68899 * 21 20 18 23 23 N 1.29003 * 107.35077 * 179.83075 * 22 21 20 24 24 N 1.28785 * 108.72612 * 0.43565 * 23 22 21 25 25 C 1.46499 * 125.44828 * 179.72033 * 24 23 22 26 26 C 1.52997 * 109.47271 * 239.99879 * 25 24 23 27 27 C 1.53006 * 109.46898 * 0.02562 * 25 24 23 28 28 C 1.53000 * 109.46828 * 119.99640 * 25 24 23 29 29 N 1.28877 * 109.10274 * 359.72135 * 24 23 22 30 30 H 1.09002 * 109.47324 * 293.64361 * 1 2 3 31 31 H 1.09004 * 109.47034 * 53.64398 * 1 2 3 32 32 H 1.08997 * 109.47287 * 173.63575 * 1 2 3 33 33 H 0.97004 * 120.00262 * 84.40767 * 6 4 2 34 34 H 0.96992 * 120.00542 * 180.02562 * 10 9 7 35 35 H 1.08996 * 111.00597 * 82.57140 * 15 4 2 36 36 H 1.08998 * 111.00401 * 206.42449 * 15 4 2 37 37 H 1.08998 * 110.36283 * 155.84689 * 16 15 4 38 38 H 1.08997 * 110.36500 * 278.06285 * 16 15 4 39 39 H 1.09008 * 109.47070 * 300.00378 * 20 18 17 40 40 H 1.08998 * 109.47167 * 60.00163 * 20 18 17 41 41 H 1.08999 * 109.46643 * 60.00343 * 26 25 24 42 42 H 1.08997 * 109.46651 * 179.97438 * 26 25 24 43 43 H 1.08999 * 109.47139 * 300.00277 * 26 25 24 44 44 H 1.09004 * 109.46713 * 60.00089 * 27 25 24 45 45 H 1.08999 * 109.46476 * 179.97438 * 27 25 24 46 46 H 1.08992 * 109.47010 * 299.99698 * 27 25 24 47 47 H 1.09002 * 109.47108 * 60.00624 * 28 25 24 48 48 H 1.08999 * 109.47062 * 179.97438 * 28 25 24 49 49 H 1.08995 * 109.47633 * 300.00591 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3524 -0.0483 2.0223 6 7 1.0471 -1.6855 1.7474 7 6 0.2101 -1.3082 2.7635 8 1 0.2933 -0.3208 3.1931 9 6 -0.7443 -2.1952 3.2420 10 7 -0.8453 -3.3988 2.7189 11 14 -1.8865 -1.6804 4.6276 12 1 -2.8069 -2.7996 4.9521 13 1 -1.0837 -1.3351 5.8283 14 1 -2.6770 -0.4970 4.2036 15 6 3.2876 -1.5143 0.6924 16 6 2.8145 -1.8795 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8087 -0.3612 -2.4657 19 8 1.1454 0.6223 -2.7180 20 6 2.3854 -1.1887 -3.5854 21 6 1.9949 -0.5842 -4.9094 22 7 0.9055 -0.8706 -5.6224 23 7 0.9380 -0.1397 -6.6849 24 7 2.0068 0.5783 -6.6604 25 6 2.4108 1.5362 -7.6925 26 6 3.7661 1.1228 -8.2696 27 6 1.3647 1.5544 -8.8089 28 6 2.5230 2.9323 -7.0768 29 7 2.6642 0.3193 -5.5825 30 1 -0.3634 0.4121 0.9414 31 1 -0.3633 0.6092 -0.8277 32 1 -0.3634 -1.0213 -0.1139 33 1 0.9727 -2.5725 1.3618 34 1 -1.5125 -4.0185 3.0530 35 1 4.1654 -0.8690 0.6604 36 1 3.4851 -2.4111 1.2797 37 1 3.6716 -2.0339 -1.3922 38 1 2.1901 -2.7726 -0.7130 39 1 3.4721 -1.2071 -3.5011 40 1 1.9988 -2.2058 -3.5218 41 1 3.6860 0.1282 -8.7083 42 1 4.0664 1.8353 -9.0378 43 1 4.5111 1.1101 -7.4740 44 1 0.3993 1.8492 -8.3974 45 1 1.6651 2.2674 -9.5767 46 1 1.2843 0.5599 -9.2477 47 1 3.2681 2.9197 -6.2812 48 1 2.8241 3.6449 -7.8446 49 1 1.5575 3.2268 -6.6656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986304546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:56 Heat of formation + Delta-G solvation = 107.491428 kcal Electronic energy + Delta-G solvation = -29781.931663 eV Core-core repulsion = 25782.839042 eV Total energy + Delta-G solvation = -3999.092621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.34114 -39.87392 -37.99510 -37.38270 -33.99987 -33.56105 -33.21131 -31.58829 -30.72679 -29.73577 -28.39740 -28.01881 -27.76113 -25.21596 -24.65057 -23.45502 -23.05599 -21.89552 -20.78074 -19.83005 -18.50224 -17.57212 -17.29241 -17.22232 -16.51329 -15.96501 -15.12451 -14.89239 -14.65226 -14.53338 -14.35413 -13.89355 -13.77239 -13.50742 -13.41991 -13.36772 -12.96809 -12.89109 -12.79281 -12.56865 -12.47938 -12.32004 -12.18231 -11.96620 -11.91509 -11.50108 -11.42489 -11.30074 -10.89854 -10.86629 -10.82939 -10.82299 -10.59041 -10.49694 -10.25149 -10.14269 -10.05922 -9.66524 -9.42530 -8.94474 -8.22677 -7.03091 -5.80809 -3.10110 1.25854 1.75100 2.16315 2.89451 3.31332 3.42996 3.48307 3.48533 3.71312 4.02261 4.07983 4.18235 4.48594 4.55906 4.70512 4.91945 4.94899 4.99046 5.01969 5.10721 5.13799 5.18845 5.19236 5.29365 5.36877 5.44577 5.47826 5.57161 5.60044 5.63053 5.70471 5.73947 5.79338 5.87736 5.90371 6.11484 6.20832 6.25625 6.31430 6.47338 6.58904 6.68375 6.87384 7.07499 7.38457 7.66478 7.90368 8.36540 8.41737 8.46293 9.48740 10.02508 10.37677 11.41154 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.002341 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.137565 B =11958.762182 C =12262.267381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.110 3.890 3 H 0.059 0.941 4 C 0.171 3.829 5 H 0.074 0.926 6 N -0.708 5.708 7 C -0.240 4.240 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.292 1.292 13 H -0.286 1.286 14 H -0.286 1.286 15 C -0.145 4.145 16 C 0.099 3.901 17 N -0.602 5.602 18 C 0.533 3.467 19 O -0.539 6.539 20 C -0.042 4.042 21 C 0.191 3.809 22 N -0.274 5.274 23 N -0.064 5.064 24 N -0.132 5.132 25 C 0.179 3.821 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.159 4.159 29 N -0.298 5.298 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.402 7.832 -21.628 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.005 3.995 3 H 0.077 0.923 4 C 0.058 3.942 5 H 0.092 0.908 6 N -0.347 5.347 7 C -0.371 4.371 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.736 3.264 12 H -0.218 1.218 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.184 4.184 16 C -0.024 4.024 17 N -0.336 5.336 18 C 0.319 3.681 19 O -0.416 6.416 20 C -0.085 4.085 21 C -0.092 4.092 22 N -0.145 5.145 23 N -0.057 5.057 24 N -0.046 5.046 25 C 0.098 3.902 26 C -0.215 4.215 27 C -0.211 4.211 28 C -0.217 4.217 29 N -0.148 5.148 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.552 8.553 -22.246 26.936 hybrid contribution -0.484 -0.200 1.070 1.191 sum 12.068 8.353 -21.176 25.765 Atomic orbital electron populations 1.21755 0.93694 1.02630 1.00907 1.22744 0.96213 0.95309 0.85251 0.92330 1.21249 0.88495 0.92232 0.92244 0.90760 1.42316 1.37526 1.13938 1.40964 1.19134 1.10231 0.98324 1.09447 0.91135 1.24718 0.99704 0.96134 0.99944 1.69633 1.37438 1.06178 1.44488 0.86307 0.80710 0.77285 0.82109 1.21751 1.21264 1.21225 1.23145 0.98562 1.01829 0.94877 1.22360 0.94595 0.89216 0.96232 1.48556 1.51876 1.28403 1.04794 1.19630 0.80906 0.85251 0.82280 1.90704 1.39904 1.27834 1.83145 1.19876 1.03389 1.00285 0.84908 1.24629 0.90455 0.95397 0.98730 1.75828 1.19358 1.19203 1.00123 1.78890 1.06745 1.02985 1.17071 1.50385 1.12411 1.27460 1.14335 1.21340 0.97319 0.86825 0.84686 1.22216 0.94142 1.02938 1.02247 1.22083 0.98257 1.04309 0.96408 1.22230 1.04272 0.92788 1.02445 1.74515 1.24883 1.17655 0.97706 0.91314 0.94391 0.91676 0.78047 0.93390 0.91033 0.89437 0.91389 0.90840 0.86368 0.85804 0.91467 0.89284 0.90438 0.90551 0.89373 0.90637 0.90412 0.89340 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.02 37.15 0.30 -2.51 16 2 C 0.11 2.03 3.44 -66.95 -0.23 1.80 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.17 3.11 3.52 -66.09 -0.23 2.87 16 5 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 6 N -0.71 -16.18 3.91 -51.65 -0.20 -16.38 16 7 C -0.24 -6.23 8.40 -15.06 -0.13 -6.36 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 11 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 C -0.14 -2.04 6.69 -24.58 -0.16 -2.20 16 16 C 0.10 1.32 6.63 -2.52 -0.02 1.30 16 17 N -0.60 -9.83 3.06 -163.02 -0.50 -10.33 16 18 C 0.53 9.08 7.64 -10.99 -0.08 9.00 16 19 O -0.54 -11.37 15.18 5.55 0.08 -11.29 16 20 C -0.04 -0.54 5.33 -29.04 -0.15 -0.70 16 21 C 0.19 2.93 6.86 -156.62 -1.07 1.86 16 22 N -0.27 -4.63 12.50 32.45 0.41 -4.22 16 23 N -0.06 -0.97 12.24 60.35 0.74 -0.23 16 24 N -0.13 -1.68 3.73 0.48 0.00 -1.68 16 25 C 0.18 1.44 1.30 -131.82 -0.17 1.27 16 26 C -0.16 -0.91 8.67 37.16 0.32 -0.59 16 27 C -0.15 -0.95 7.91 37.16 0.29 -0.65 16 28 C -0.16 -1.15 8.66 37.16 0.32 -0.83 16 29 N -0.30 -4.24 11.83 32.47 0.38 -3.85 16 30 H 0.07 1.53 7.12 -51.93 -0.37 1.16 16 31 H 0.04 0.82 7.08 -51.93 -0.37 0.46 16 32 H 0.06 1.54 7.63 -51.93 -0.40 1.15 16 33 H 0.39 9.44 7.84 -40.82 -0.32 9.12 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.07 0.67 7.47 -51.93 -0.39 0.28 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.12 1.16 7.85 -51.92 -0.41 0.75 16 40 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -34.44 398.12 -6.63 -41.07 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.13 Total: 6.36 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.12 Total: 3.93 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 1.55 Total: -62.98 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.44 -6.63 -41.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986304546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.564 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds