Wall clock time and date at job start Tue Mar 31 2020 21:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.00500 * 2 1 4 4 C 1.54325 * 109.88206 * 121.09617 * 2 1 3 5 5 H 1.08998 * 110.87292 * 260.04523 * 4 2 1 6 6 N 1.46498 * 110.71803 * 23.24684 * 4 2 1 7 7 C 1.36941 * 119.99923 * 264.40528 * 6 4 2 8 8 H 1.08003 * 119.99943 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00010 * 180.02562 * 7 6 4 10 10 N 1.31621 * 120.00451 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00169 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47116 * 179.97438 * 11 9 7 13 13 H 1.48499 * 109.46673 * 299.99472 * 11 9 7 14 14 H 1.48497 * 109.47120 * 59.99215 * 11 9 7 15 15 C 1.55160 * 102.94487 * 141.60932 * 4 2 1 16 16 C 1.54916 * 101.57987 * 324.49849 * 15 4 2 17 17 N 1.47023 * 109.88440 * 238.90325 * 2 1 3 18 18 C 1.34775 * 125.65027 * 61.68761 * 17 2 1 19 19 O 1.21285 * 119.99757 * 359.97438 * 18 17 2 20 20 C 1.50696 * 120.00361 * 179.97438 * 18 17 2 21 21 C 1.50702 * 109.47354 * 180.02562 * 20 18 17 22 22 N 1.33311 * 126.54891 * 269.68899 * 21 20 18 23 23 N 1.29003 * 107.35077 * 179.83075 * 22 21 20 24 24 N 1.28785 * 108.72612 * 0.43565 * 23 22 21 25 25 C 1.46499 * 125.44828 * 179.72033 * 24 23 22 26 26 C 1.52997 * 109.47271 * 239.99879 * 25 24 23 27 27 C 1.53006 * 109.46898 * 0.02562 * 25 24 23 28 28 C 1.53000 * 109.46828 * 119.99640 * 25 24 23 29 29 N 1.28877 * 109.10274 * 359.72135 * 24 23 22 30 30 H 1.09002 * 109.47324 * 293.64361 * 1 2 3 31 31 H 1.09004 * 109.47034 * 53.64398 * 1 2 3 32 32 H 1.08997 * 109.47287 * 173.63575 * 1 2 3 33 33 H 0.97004 * 120.00262 * 84.40767 * 6 4 2 34 34 H 0.96992 * 120.00542 * 180.02562 * 10 9 7 35 35 H 1.08996 * 111.00597 * 82.57140 * 15 4 2 36 36 H 1.08998 * 111.00401 * 206.42449 * 15 4 2 37 37 H 1.08998 * 110.36283 * 155.84689 * 16 15 4 38 38 H 1.08997 * 110.36500 * 278.06285 * 16 15 4 39 39 H 1.09008 * 109.47070 * 300.00378 * 20 18 17 40 40 H 1.08998 * 109.47167 * 60.00163 * 20 18 17 41 41 H 1.08999 * 109.46643 * 60.00343 * 26 25 24 42 42 H 1.08997 * 109.46651 * 179.97438 * 26 25 24 43 43 H 1.08999 * 109.47139 * 300.00277 * 26 25 24 44 44 H 1.09004 * 109.46713 * 60.00089 * 27 25 24 45 45 H 1.08999 * 109.46476 * 179.97438 * 27 25 24 46 46 H 1.08992 * 109.47010 * 299.99698 * 27 25 24 47 47 H 1.09002 * 109.47108 * 60.00624 * 28 25 24 48 48 H 1.08999 * 109.47062 * 179.97438 * 28 25 24 49 49 H 1.08995 * 109.47633 * 300.00591 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3524 -0.0483 2.0223 6 7 1.0471 -1.6855 1.7474 7 6 0.2101 -1.3082 2.7635 8 1 0.2933 -0.3208 3.1931 9 6 -0.7443 -2.1952 3.2420 10 7 -0.8453 -3.3988 2.7189 11 14 -1.8865 -1.6804 4.6276 12 1 -2.8069 -2.7996 4.9521 13 1 -1.0837 -1.3351 5.8283 14 1 -2.6770 -0.4970 4.2036 15 6 3.2876 -1.5143 0.6924 16 6 2.8145 -1.8795 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8087 -0.3612 -2.4657 19 8 1.1454 0.6223 -2.7180 20 6 2.3854 -1.1887 -3.5854 21 6 1.9949 -0.5842 -4.9094 22 7 0.9055 -0.8706 -5.6224 23 7 0.9380 -0.1397 -6.6849 24 7 2.0068 0.5783 -6.6604 25 6 2.4108 1.5362 -7.6925 26 6 3.7661 1.1228 -8.2696 27 6 1.3647 1.5544 -8.8089 28 6 2.5230 2.9323 -7.0768 29 7 2.6642 0.3193 -5.5825 30 1 -0.3634 0.4121 0.9414 31 1 -0.3633 0.6092 -0.8277 32 1 -0.3634 -1.0213 -0.1139 33 1 0.9727 -2.5725 1.3618 34 1 -1.5125 -4.0185 3.0530 35 1 4.1654 -0.8690 0.6604 36 1 3.4851 -2.4111 1.2797 37 1 3.6716 -2.0339 -1.3922 38 1 2.1901 -2.7726 -0.7130 39 1 3.4721 -1.2071 -3.5011 40 1 1.9988 -2.2058 -3.5218 41 1 3.6860 0.1282 -8.7083 42 1 4.0664 1.8353 -9.0378 43 1 4.5111 1.1101 -7.4740 44 1 0.3993 1.8492 -8.3974 45 1 1.6651 2.2674 -9.5767 46 1 1.2843 0.5599 -9.2477 47 1 3.2681 2.9197 -6.2812 48 1 2.8241 3.6449 -7.8446 49 1 1.5575 3.2268 -6.6656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986304546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:55 Heat of formation + Delta-G solvation = 83.561671 kcal Electronic energy + Delta-G solvation = -29782.969335 eV Core-core repulsion = 25782.839042 eV Total energy + Delta-G solvation = -4000.130293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.39607 -41.23564 -39.01653 -38.50571 -35.74325 -34.68197 -34.22282 -33.27333 -32.15612 -31.13750 -29.73130 -28.52274 -28.39087 -26.80434 -25.64038 -25.28547 -24.32791 -23.08836 -21.65336 -21.19862 -19.86545 -19.34594 -18.48415 -18.01367 -17.78077 -17.32405 -16.52144 -16.26597 -15.86584 -15.38391 -15.31472 -15.18313 -15.14327 -15.00838 -14.71134 -14.53510 -14.09556 -13.97895 -13.77037 -13.44013 -13.30438 -13.23571 -13.09025 -13.01069 -12.86235 -12.84472 -12.75245 -12.57072 -12.39165 -12.27643 -12.22708 -12.16265 -11.95677 -11.86784 -11.82666 -11.66798 -11.47594 -11.31990 -10.93560 -10.74483 -9.59869 -8.97033 -7.89980 -5.16283 0.20606 0.91513 1.03889 1.48685 1.50591 1.55451 1.59615 2.08013 2.58572 2.78866 3.15501 3.40045 3.51819 3.55069 3.60115 3.66755 3.77364 3.92921 4.07351 4.20835 4.31232 4.39371 4.44319 4.45399 4.49373 4.52480 4.57987 4.60225 4.63017 4.68700 4.71219 4.72560 4.76000 4.83310 4.85839 5.01250 5.03669 5.11207 5.15679 5.21315 5.29931 5.35579 5.36202 5.49795 5.52697 5.60159 6.31654 6.61183 7.14127 7.32547 7.39851 8.13713 8.37046 9.32667 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.002341 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.137565 B =11958.762182 C =12262.267381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.116 3.884 3 H 0.064 0.936 4 C 0.162 3.838 5 H 0.078 0.922 6 N -0.716 5.716 7 C -0.226 4.226 8 H 0.075 0.925 9 C -0.071 4.071 10 N -0.965 5.965 11 Si 0.959 3.041 12 H -0.300 1.300 13 H -0.276 1.276 14 H -0.286 1.286 15 C -0.130 4.130 16 C 0.097 3.903 17 N -0.601 5.601 18 C 0.529 3.471 19 O -0.588 6.588 20 C -0.033 4.033 21 C 0.176 3.824 22 N -0.313 5.313 23 N -0.080 5.080 24 N -0.118 5.118 25 C 0.161 3.839 26 C -0.150 4.150 27 C -0.149 4.149 28 C -0.155 4.155 29 N -0.301 5.301 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.376 0.624 34 H 0.248 0.752 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.063 0.937 39 H 0.159 0.841 40 H 0.143 0.857 41 H 0.062 0.938 42 H 0.126 0.874 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.127 0.873 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.128 0.872 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.404 8.756 -23.097 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.009 3.991 3 H 0.082 0.918 4 C 0.051 3.949 5 H 0.096 0.904 6 N -0.354 5.354 7 C -0.358 4.358 8 H 0.093 0.907 9 C -0.263 4.263 10 N -0.616 5.616 11 Si 0.790 3.210 12 H -0.227 1.227 13 H -0.202 1.202 14 H -0.213 1.213 15 C -0.168 4.168 16 C -0.025 4.025 17 N -0.334 5.334 18 C 0.317 3.683 19 O -0.469 6.469 20 C -0.075 4.075 21 C -0.107 4.107 22 N -0.183 5.183 23 N -0.072 5.072 24 N -0.034 5.034 25 C 0.082 3.918 26 C -0.209 4.209 27 C -0.207 4.207 28 C -0.213 4.213 29 N -0.152 5.152 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.208 0.792 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.177 0.823 40 H 0.160 0.840 41 H 0.081 0.919 42 H 0.144 0.856 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.145 0.855 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.147 0.853 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.599 9.492 -23.721 29.935 hybrid contribution -1.362 -0.322 1.414 1.989 sum 14.237 9.170 -22.307 28.007 Atomic orbital electron populations 1.21549 0.96356 1.00086 0.99386 1.22477 0.93852 0.96065 0.86666 0.91819 1.21483 0.89177 0.92154 0.92082 0.90410 1.42418 1.38261 1.14266 1.40435 1.19460 1.09502 0.97912 1.08893 0.90739 1.25370 1.01798 0.96547 1.02611 1.69769 1.38393 1.07170 1.46242 0.85420 0.79028 0.76347 0.80229 1.22708 1.20207 1.21324 1.23081 0.97314 1.01802 0.94651 1.22589 0.95634 0.87400 0.96856 1.48581 1.51781 1.28889 1.04131 1.20322 0.80075 0.84892 0.83016 1.90683 1.42102 1.30192 1.83905 1.19988 1.05585 0.99838 0.82119 1.25044 0.90293 0.95808 0.99535 1.75775 1.20647 1.20725 1.01168 1.78802 1.07742 1.03641 1.16987 1.50987 1.11309 1.26770 1.14357 1.22036 0.99186 0.86341 0.84278 1.22241 0.92137 1.03789 1.02708 1.22139 0.96996 1.05101 0.96498 1.22262 1.02701 0.93124 1.03258 1.74476 1.25158 1.17383 0.98153 0.92900 0.95659 0.94611 0.79155 0.94304 0.87779 0.89247 0.86374 0.91868 0.82296 0.83956 0.91883 0.85606 0.91303 0.92310 0.85511 0.91166 0.91738 0.85325 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 8.02 71.98 0.58 -4.50 16 2 C 0.12 4.19 3.44 45.34 0.16 4.35 16 3 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.16 5.67 3.52 46.18 0.16 5.84 16 5 H 0.08 2.69 8.06 -2.39 -0.02 2.67 16 6 N -0.72 -32.68 3.91 -317.32 -1.24 -33.93 16 7 C -0.23 -11.76 8.40 84.03 0.71 -11.05 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 10 N -0.96 -57.41 13.06 21.65 0.28 -57.13 16 11 Si 0.96 45.81 29.55 68.60 2.03 47.84 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 15 C -0.13 -3.22 6.69 31.99 0.21 -3.00 16 16 C 0.10 2.27 6.63 86.86 0.58 2.84 16 17 N -0.60 -18.62 3.06 -788.05 -2.41 -21.03 16 18 C 0.53 17.46 7.64 87.66 0.67 18.13 16 19 O -0.59 -25.14 15.18 -3.04 -0.05 -25.19 16 20 C -0.03 -0.80 5.33 29.10 0.16 -0.64 16 21 C 0.18 5.30 6.86 138.55 0.95 6.25 16 22 N -0.31 -10.70 12.50 -51.26 -0.64 -11.34 16 23 N -0.08 -2.43 12.24 37.02 0.45 -1.97 16 24 N -0.12 -2.95 3.73 -152.39 -0.57 -3.52 16 25 C 0.16 2.32 1.30 3.60 0.00 2.33 16 26 C -0.15 -1.34 8.67 71.98 0.62 -0.72 16 27 C -0.15 -1.61 7.91 71.98 0.57 -1.04 16 28 C -0.16 -1.99 8.66 71.98 0.62 -1.37 16 29 N -0.30 -8.32 11.83 -51.20 -0.61 -8.93 16 30 H 0.05 2.43 7.12 -2.39 -0.02 2.41 16 31 H 0.02 1.13 7.08 -2.39 -0.02 1.12 16 32 H 0.03 1.75 7.63 -2.39 -0.02 1.73 16 33 H 0.38 18.59 7.84 -92.71 -0.73 17.86 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.12 1.67 7.47 -2.39 -0.02 1.65 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.16 2.44 7.85 -2.38 -0.02 2.42 16 40 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -79.61 398.12 3.92 -75.69 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.22 Total: 25.59 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.45 Total: 13.93 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -4.73 Total: -137.86 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -79.61 3.92 -75.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986304546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.251 kcal (2) G-P(sol) polarization free energy of solvation -79.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds