Wall clock time and date at job start Tue Mar 31 2020 21:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46971 * 60.00379 * 11 9 7 13 13 H 1.48499 * 109.47124 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46925 * 300.00310 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34774 * 125.64831 * 61.61497 * 17 2 1 19 19 O 1.21288 * 119.99873 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00024 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.47069 * 180.02562 * 20 18 17 22 22 N 1.33318 * 126.55124 * 90.02618 * 21 20 18 23 23 N 1.28998 * 107.35610 * 179.97438 * 22 21 20 24 24 N 1.28782 * 108.72629 * 0.02562 * 23 22 21 25 25 C 1.46499 * 125.44725 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.47398 * 359.97438 * 25 24 23 27 27 C 1.53000 * 109.46776 * 119.97490 * 25 24 23 28 28 C 1.52996 * 109.47170 * 239.97324 * 25 24 23 29 29 N 1.28879 * 109.09937 * 359.72883 * 24 23 22 30 30 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 31 31 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 32 32 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 33 33 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 34 34 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 35 35 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 36 36 H 1.09000 * 111.01035 * 206.42671 * 15 4 2 37 37 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 38 38 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 39 39 H 1.08999 * 109.46936 * 300.00137 * 20 18 17 40 40 H 1.08993 * 109.47167 * 60.00346 * 20 18 17 41 41 H 1.09002 * 109.47439 * 59.99945 * 26 25 24 42 42 H 1.08997 * 109.47240 * 180.02562 * 26 25 24 43 43 H 1.09005 * 109.46947 * 299.99640 * 26 25 24 44 44 H 1.09006 * 109.47037 * 60.00370 * 27 25 24 45 45 H 1.08999 * 109.47205 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.47658 * 299.99793 * 27 25 24 47 47 H 1.09005 * 109.47218 * 60.00333 * 28 25 24 48 48 H 1.08997 * 109.47259 * 180.02562 * 28 25 24 49 49 H 1.08998 * 109.47569 * 300.00479 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 3.7724 -0.9661 6.5562 13 1 3.2831 1.3114 7.2312 14 1 1.4709 -0.2343 6.7768 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8076 -0.3652 -2.4652 19 8 1.1439 0.6178 -2.7189 20 6 2.3835 -1.1947 -3.5838 21 6 1.9917 -0.5928 -4.9086 22 7 2.6720 0.3248 -5.5960 23 7 2.0044 0.5733 -6.6715 24 7 0.9408 -0.1528 -6.6749 25 6 -0.0787 -0.1614 -7.7269 26 6 0.3138 0.8283 -8.8256 27 6 -0.1861 -1.5671 -8.3213 28 6 -1.4284 0.2454 -7.1324 29 7 0.9200 -0.8752 -5.6077 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 -1.0275 -0.0183 32 1 -0.3634 0.5296 -0.8807 33 1 2.7188 1.1016 2.0480 34 1 3.4616 2.5588 4.9552 35 1 4.1655 -0.8679 0.6615 36 1 3.4853 -2.4093 1.2828 37 1 3.6716 -2.0356 -1.3896 38 1 2.1903 -2.7735 -0.7093 39 1 3.4701 -1.2128 -3.5005 40 1 1.9971 -2.2118 -3.5180 41 1 1.2755 0.5385 -9.2492 42 1 -0.4449 0.8222 -9.6081 43 1 0.3903 1.8298 -8.4021 44 1 -0.4658 -2.2723 -7.5385 45 1 -0.9449 -1.5737 -9.1038 46 1 0.7755 -1.8571 -8.7449 47 1 -1.3519 1.2469 -6.7089 48 1 -2.1870 0.2386 -7.9151 49 1 -1.7081 -0.4596 -6.3496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986304550.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:00 Heat of formation + Delta-G solvation = 103.573003 kcal Electronic energy + Delta-G solvation = -29391.816033 eV Core-core repulsion = 25392.553496 eV Total energy + Delta-G solvation = -3999.262537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.41452 -39.99076 -38.03551 -37.40086 -34.14119 -33.65462 -33.30011 -31.72520 -30.91662 -29.84658 -28.65225 -28.05329 -27.84632 -25.21038 -24.71988 -23.42406 -22.92683 -21.95398 -20.83921 -20.13649 -18.85709 -17.52240 -17.30708 -17.22727 -16.67033 -16.00524 -15.48157 -14.84649 -14.72137 -14.63586 -14.27983 -14.13955 -13.77399 -13.57110 -13.43276 -13.36185 -13.01303 -12.95889 -12.83937 -12.67292 -12.46694 -12.35415 -12.05765 -12.04398 -11.96203 -11.81479 -11.61131 -11.51587 -11.16737 -11.03054 -10.96820 -10.89559 -10.83203 -10.58986 -10.31710 -10.26615 -10.04188 -9.76973 -9.54748 -8.94460 -8.41397 -7.03818 -5.81422 -3.12147 1.19168 1.68922 2.07411 2.74625 3.13617 3.41496 3.46145 3.47403 3.64429 3.94209 4.03984 4.14364 4.41105 4.54655 4.57455 4.88031 4.91370 4.98381 5.01118 5.05165 5.07646 5.14017 5.15603 5.25173 5.27967 5.39196 5.43679 5.48437 5.51973 5.58438 5.60469 5.65571 5.68843 5.80106 5.82823 5.94619 6.09309 6.13366 6.14521 6.29942 6.46463 6.58861 6.62095 6.73391 6.92009 7.64722 7.72759 8.29647 8.34352 8.35918 9.47071 10.01636 10.36229 11.40565 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030302 B = 0.002082 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.817724 B =13447.471026 C =13592.695707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.078 0.922 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.095 3.905 17 N -0.607 5.607 18 C 0.534 3.466 19 O -0.535 6.535 20 C -0.040 4.040 21 C 0.189 3.811 22 N -0.276 5.276 23 N -0.063 5.063 24 N -0.131 5.131 25 C 0.179 3.821 26 C -0.153 4.153 27 C -0.157 4.157 28 C -0.159 4.159 29 N -0.296 5.296 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 -10.011 -26.563 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.096 0.904 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.028 4.028 17 N -0.341 5.341 18 C 0.321 3.679 19 O -0.412 6.412 20 C -0.083 4.083 21 C -0.094 4.094 22 N -0.146 5.146 23 N -0.056 5.056 24 N -0.045 5.045 25 C 0.098 3.902 26 C -0.211 4.211 27 C -0.216 4.216 28 C -0.218 4.218 29 N -0.146 5.146 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.896 -9.117 -27.149 29.458 hybrid contribution 0.185 -0.281 1.421 1.460 sum -6.711 -9.397 -25.728 28.201 Atomic orbital electron populations 1.22033 0.94947 1.01524 1.02639 1.21971 0.94408 0.96982 0.84320 0.90439 1.21240 0.93565 0.91576 0.87147 0.91430 1.42347 1.79253 1.11884 1.01907 1.19162 1.38605 0.96912 0.82903 0.91020 1.24776 1.01896 0.95875 0.98125 1.69656 1.50923 1.04601 1.32509 0.86252 0.77731 0.77221 0.84841 1.21188 1.21698 1.21202 1.23582 1.01464 1.01793 0.92935 1.22447 0.94638 0.88266 0.97450 1.48494 1.52175 1.28757 1.04686 1.19667 0.80869 0.85243 0.82164 1.90720 1.39944 1.27469 1.83087 1.19844 1.03898 0.99793 0.84782 1.24606 0.89579 0.96537 0.98710 1.75814 1.24494 1.14126 1.00208 1.78888 0.95167 1.15163 1.16374 1.50398 1.16476 1.23048 1.14557 1.21357 0.85331 0.99417 0.84082 1.22085 1.03421 0.98926 0.96634 1.22222 1.03734 0.93451 1.02162 1.22232 0.93528 1.03385 1.02609 1.74520 1.22776 1.19536 0.97789 0.91146 0.93108 0.92172 0.77951 0.93300 0.90560 0.90472 0.91113 0.91440 0.85782 0.86176 0.90642 0.89327 0.90540 0.90424 0.89245 0.91465 0.91244 0.89285 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.09 37.16 0.34 -2.27 16 2 C 0.13 2.26 3.21 -66.95 -0.21 2.04 16 3 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 4 C 0.18 3.32 3.14 -66.10 -0.21 3.11 16 5 H 0.07 1.27 7.80 -51.93 -0.41 0.86 16 6 N -0.71 -17.22 5.22 -51.65 -0.27 -17.49 16 7 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 11 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 15 C -0.16 -2.45 6.77 -24.58 -0.17 -2.61 16 16 C 0.10 1.16 6.69 -2.53 -0.02 1.14 16 17 N -0.61 -9.19 3.07 -163.01 -0.50 -9.69 16 18 C 0.53 8.40 7.64 -10.99 -0.08 8.32 16 19 O -0.54 -10.63 15.08 5.55 0.08 -10.54 16 20 C -0.04 -0.47 5.33 -29.04 -0.15 -0.63 16 21 C 0.19 2.70 6.86 -156.62 -1.07 1.62 16 22 N -0.28 -4.34 12.50 32.45 0.41 -3.94 16 23 N -0.06 -0.90 12.24 60.35 0.74 -0.16 16 24 N -0.13 -1.57 3.73 0.48 0.00 -1.57 16 25 C 0.18 1.34 1.30 -131.82 -0.17 1.17 16 26 C -0.15 -0.87 7.91 37.16 0.29 -0.57 16 27 C -0.16 -0.84 8.66 37.16 0.32 -0.52 16 28 C -0.16 -1.08 8.67 37.16 0.32 -0.76 16 29 N -0.30 -3.99 11.83 32.47 0.38 -3.61 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.08 6.90 -51.93 -0.36 0.72 16 33 H 0.39 10.13 7.56 -40.82 -0.31 9.82 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.12 1.19 7.85 -51.93 -0.41 0.78 16 40 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -34.91 401.90 -6.61 -41.52 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.16 Total: 6.50 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.06 Total: 3.00 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: 1.49 Total: -63.39 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.91 -6.61 -41.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986304550.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.097 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds