Wall clock time and date at job start Tue Mar 31 2020 21:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46971 * 60.00379 * 11 9 7 13 13 H 1.48499 * 109.47124 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46925 * 300.00310 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34774 * 125.64831 * 61.61497 * 17 2 1 19 19 O 1.21288 * 119.99873 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00024 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.47069 * 180.02562 * 20 18 17 22 22 N 1.33318 * 126.55124 * 90.02618 * 21 20 18 23 23 N 1.28998 * 107.35610 * 179.97438 * 22 21 20 24 24 N 1.28782 * 108.72629 * 0.02562 * 23 22 21 25 25 C 1.46499 * 125.44725 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.47398 * 359.97438 * 25 24 23 27 27 C 1.53000 * 109.46776 * 119.97490 * 25 24 23 28 28 C 1.52996 * 109.47170 * 239.97324 * 25 24 23 29 29 N 1.28879 * 109.09937 * 359.72883 * 24 23 22 30 30 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 31 31 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 32 32 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 33 33 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 34 34 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 35 35 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 36 36 H 1.09000 * 111.01035 * 206.42671 * 15 4 2 37 37 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 38 38 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 39 39 H 1.08999 * 109.46936 * 300.00137 * 20 18 17 40 40 H 1.08993 * 109.47167 * 60.00346 * 20 18 17 41 41 H 1.09002 * 109.47439 * 59.99945 * 26 25 24 42 42 H 1.08997 * 109.47240 * 180.02562 * 26 25 24 43 43 H 1.09005 * 109.46947 * 299.99640 * 26 25 24 44 44 H 1.09006 * 109.47037 * 60.00370 * 27 25 24 45 45 H 1.08999 * 109.47205 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.47658 * 299.99793 * 27 25 24 47 47 H 1.09005 * 109.47218 * 60.00333 * 28 25 24 48 48 H 1.08997 * 109.47259 * 180.02562 * 28 25 24 49 49 H 1.08998 * 109.47569 * 300.00479 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 3.7724 -0.9661 6.5562 13 1 3.2831 1.3114 7.2312 14 1 1.4709 -0.2343 6.7768 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8076 -0.3652 -2.4652 19 8 1.1439 0.6178 -2.7189 20 6 2.3835 -1.1947 -3.5838 21 6 1.9917 -0.5928 -4.9086 22 7 2.6720 0.3248 -5.5960 23 7 2.0044 0.5733 -6.6715 24 7 0.9408 -0.1528 -6.6749 25 6 -0.0787 -0.1614 -7.7269 26 6 0.3138 0.8283 -8.8256 27 6 -0.1861 -1.5671 -8.3213 28 6 -1.4284 0.2454 -7.1324 29 7 0.9200 -0.8752 -5.6077 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 -1.0275 -0.0183 32 1 -0.3634 0.5296 -0.8807 33 1 2.7188 1.1016 2.0480 34 1 3.4616 2.5588 4.9552 35 1 4.1655 -0.8679 0.6615 36 1 3.4853 -2.4093 1.2828 37 1 3.6716 -2.0356 -1.3896 38 1 2.1903 -2.7735 -0.7093 39 1 3.4701 -1.2128 -3.5005 40 1 1.9971 -2.2118 -3.5180 41 1 1.2755 0.5385 -9.2492 42 1 -0.4449 0.8222 -9.6081 43 1 0.3903 1.8298 -8.4021 44 1 -0.4658 -2.2723 -7.5385 45 1 -0.9449 -1.5737 -9.1038 46 1 0.7755 -1.8571 -8.7449 47 1 -1.3519 1.2469 -6.7089 48 1 -2.1870 0.2386 -7.9151 49 1 -1.7081 -0.4596 -6.3496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986304550.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:59 Heat of formation + Delta-G solvation = 78.859643 kcal Electronic energy + Delta-G solvation = -29392.887685 eV Core-core repulsion = 25392.553496 eV Total energy + Delta-G solvation = -4000.334189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.39460 -41.27037 -38.97774 -38.49749 -35.90933 -34.69653 -34.24155 -33.35987 -32.29078 -31.22667 -29.88296 -28.52286 -28.39474 -26.83634 -25.64244 -24.94037 -24.30424 -23.10085 -21.69092 -21.52573 -20.13912 -19.14881 -18.51936 -18.02512 -17.83235 -17.27346 -16.69275 -16.47570 -15.62400 -15.52429 -15.41963 -15.17488 -15.12812 -14.80183 -14.74491 -14.55977 -14.07861 -13.94851 -13.60716 -13.44181 -13.39304 -13.23320 -13.16279 -13.06267 -12.90342 -12.85841 -12.84746 -12.61777 -12.57290 -12.50856 -12.20036 -12.16226 -12.08073 -11.95445 -11.86299 -11.70419 -11.52159 -11.33190 -10.91091 -10.77322 -9.67780 -9.01280 -7.92493 -5.22597 0.21014 0.91028 1.03432 1.50019 1.53016 1.55612 1.58849 1.96642 2.58694 2.78788 3.15370 3.37348 3.49240 3.52315 3.59014 3.66684 3.78862 3.83313 4.04087 4.19564 4.20861 4.36305 4.40915 4.45338 4.46568 4.51259 4.52636 4.54887 4.60378 4.63624 4.67337 4.71522 4.72803 4.75988 4.82390 4.96682 5.01540 5.06299 5.11238 5.21591 5.22248 5.28912 5.34357 5.36119 5.49523 5.56822 6.27441 6.53682 7.08382 7.32806 7.33649 8.06416 8.29824 9.30879 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030302 B = 0.002082 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.817724 B =13447.471026 C =13592.695707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 H 0.039 0.961 4 C 0.170 3.830 5 H 0.075 0.925 6 N -0.730 5.730 7 C -0.235 4.235 8 H 0.085 0.915 9 C -0.079 4.079 10 N -0.973 5.973 11 Si 0.975 3.025 12 H -0.274 1.274 13 H -0.302 1.302 14 H -0.278 1.278 15 C -0.149 4.149 16 C 0.100 3.900 17 N -0.605 5.605 18 C 0.531 3.469 19 O -0.586 6.586 20 C -0.031 4.031 21 C 0.175 3.825 22 N -0.311 5.311 23 N -0.079 5.079 24 N -0.119 5.119 25 C 0.161 3.839 26 C -0.149 4.149 27 C -0.151 4.151 28 C -0.156 4.156 29 N -0.303 5.303 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.125 0.875 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.128 0.872 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -13.474 -28.308 32.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.057 0.943 4 C 0.060 3.940 5 H 0.093 0.907 6 N -0.369 5.369 7 C -0.367 4.367 8 H 0.103 0.897 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.804 3.196 12 H -0.200 1.200 13 H -0.229 1.229 14 H -0.204 1.204 15 C -0.190 4.190 16 C -0.021 4.021 17 N -0.338 5.338 18 C 0.320 3.680 19 O -0.466 6.466 20 C -0.073 4.073 21 C -0.108 4.108 22 N -0.181 5.181 23 N -0.071 5.071 24 N -0.035 5.035 25 C 0.082 3.918 26 C -0.207 4.207 27 C -0.209 4.209 28 C -0.214 4.214 29 N -0.153 5.153 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.169 0.831 40 H 0.177 0.823 41 H 0.089 0.911 42 H 0.144 0.856 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.143 0.857 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.146 0.854 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.587 -12.662 -28.932 32.480 hybrid contribution 0.293 0.786 1.826 2.009 sum -7.294 -11.876 -27.106 30.479 Atomic orbital electron populations 1.21912 0.94459 1.02458 1.01212 1.21646 0.94713 0.95357 0.85507 0.94257 1.21459 0.95265 0.90985 0.86244 0.90685 1.42541 1.79662 1.12162 1.02521 1.19607 1.36074 0.97071 0.83939 0.89686 1.25610 1.03073 0.96100 1.02307 1.69837 1.53387 1.05896 1.33211 0.85194 0.78028 0.76566 0.79851 1.19963 1.22870 1.20364 1.23396 0.98766 1.01306 0.95506 1.22684 0.96180 0.87790 0.95440 1.48515 1.52156 1.29256 1.03877 1.20382 0.80014 0.84862 0.82791 1.90703 1.42295 1.29827 1.83817 1.19992 1.05308 1.00328 0.81716 1.25075 0.89662 0.96500 0.99576 1.75761 1.25912 1.15297 1.01144 1.78803 0.96056 1.15883 1.16361 1.50969 1.16312 1.21539 1.14644 1.22016 0.84576 1.01543 0.83651 1.22136 1.04508 0.97313 0.96765 1.22241 1.04715 0.91325 1.02611 1.22261 0.94159 1.01539 1.03428 1.74485 1.22554 1.20042 0.98263 0.92588 0.90859 0.93546 0.79862 0.94190 0.92687 0.88930 0.87344 0.87937 0.83144 0.82321 0.91089 0.85598 0.92273 0.91343 0.85703 0.91800 0.93385 0.85403 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.09 71.98 0.65 -4.22 16 2 C 0.13 4.75 3.21 45.34 0.15 4.90 16 3 H 0.04 1.71 7.71 -2.38 -0.02 1.69 16 4 C 0.17 6.28 3.14 46.18 0.14 6.42 16 5 H 0.08 2.67 7.80 -2.39 -0.02 2.65 16 6 N -0.73 -35.86 5.22 -317.33 -1.66 -37.52 16 7 C -0.24 -12.53 9.96 84.03 0.84 -11.69 16 8 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 9 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 10 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 11 Si 0.97 45.37 29.55 68.60 2.03 47.39 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 C -0.15 -4.33 6.77 31.99 0.22 -4.11 16 16 C 0.10 2.03 6.69 86.86 0.58 2.61 16 17 N -0.60 -17.28 3.07 -788.04 -2.42 -19.69 16 18 C 0.53 16.08 7.64 87.66 0.67 16.75 16 19 O -0.59 -23.74 15.08 -3.05 -0.05 -23.79 16 20 C -0.03 -0.66 5.33 29.10 0.16 -0.50 16 21 C 0.17 4.84 6.86 138.55 0.95 5.80 16 22 N -0.31 -9.85 12.50 -51.26 -0.64 -10.49 16 23 N -0.08 -2.26 12.24 37.02 0.45 -1.80 16 24 N -0.12 -2.80 3.73 -152.40 -0.57 -3.37 16 25 C 0.16 2.18 1.30 3.60 0.00 2.19 16 26 C -0.15 -1.46 7.91 71.98 0.57 -0.89 16 27 C -0.15 -1.23 8.66 71.98 0.62 -0.60 16 28 C -0.16 -1.91 8.67 71.98 0.62 -1.28 16 29 N -0.30 -7.91 11.83 -51.20 -0.61 -8.51 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.71 6.90 -2.38 -0.02 1.69 16 33 H 0.37 20.33 7.56 -92.71 -0.70 19.63 16 34 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 37 H 0.11 1.49 7.48 -2.39 -0.02 1.47 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.15 2.34 7.85 -2.39 -0.02 2.32 16 40 H 0.16 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -81.38 401.90 3.72 -77.67 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.24 Total: 28.33 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.64 Total: 11.36 kcal Atomic # 7 Polarization: -135.81 SS G_CDS: -5.15 Total: -140.96 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -81.38 3.72 -77.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986304550.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.526 kcal (2) G-P(sol) polarization free energy of solvation -81.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds