Wall clock time and date at job start Tue Mar 31 2020 21:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.99581 * 2 1 4 4 C 1.54323 * 109.88160 * 238.90072 * 2 1 3 5 5 C 1.55153 * 103.10236 * 262.86369 * 4 2 1 6 6 H 1.09003 * 111.00505 * 82.48412 * 5 4 2 7 7 N 1.46498 * 111.00625 * 206.29678 * 5 4 2 8 8 C 1.36936 * 119.99985 * 204.99665 * 7 5 4 9 9 H 1.07998 * 120.00161 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99633 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99756 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00102 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.46889 * 89.99756 * 12 10 8 14 14 H 1.48497 * 109.47186 * 209.99701 * 12 10 8 15 15 H 1.48499 * 109.47159 * 329.99901 * 12 10 8 16 16 C 1.54915 * 101.58175 * 324.40929 * 5 4 2 17 17 N 1.47428 * 104.83102 * 37.00975 * 16 5 4 18 18 C 1.34778 * 125.64750 * 155.83142 * 17 16 5 19 19 O 1.21277 * 119.99734 * 180.02562 * 18 17 16 20 20 C 1.50696 * 119.99826 * 0.02562 * 18 17 16 21 21 C 1.50710 * 109.46864 * 180.02562 * 20 18 17 22 22 N 1.33316 * 126.54750 * 269.69343 * 21 20 18 23 23 N 1.28998 * 107.34911 * 179.83785 * 22 21 20 24 24 N 1.28784 * 108.72822 * 0.42829 * 23 22 21 25 25 C 1.46493 * 125.44905 * 179.72809 * 24 23 22 26 26 C 1.53002 * 109.46968 * 239.99995 * 25 24 23 27 27 C 1.52998 * 109.47472 * 0.02562 * 25 24 23 28 28 C 1.53006 * 109.47223 * 120.00160 * 25 24 23 29 29 N 1.28887 * 109.09860 * 359.72879 * 24 23 22 30 30 H 1.08999 * 109.47076 * 181.10096 * 1 2 3 31 31 H 1.09005 * 109.46826 * 301.09789 * 1 2 3 32 32 H 1.08995 * 109.47029 * 61.09517 * 1 2 3 33 33 H 1.09002 * 110.72057 * 144.41120 * 4 2 1 34 34 H 1.09003 * 110.71837 * 21.31694 * 4 2 1 35 35 H 0.96999 * 120.00058 * 25.00481 * 7 5 4 36 36 H 0.96991 * 119.99714 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.36497 * 155.84404 * 16 5 4 38 38 H 1.08998 * 110.36590 * 278.17045 * 16 5 4 39 39 H 1.08994 * 109.48030 * 300.00087 * 20 18 17 40 40 H 1.09004 * 109.46986 * 60.00494 * 20 18 17 41 41 H 1.08999 * 109.46698 * 60.00660 * 26 25 24 42 42 H 1.09006 * 109.46733 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.47528 * 300.00246 * 26 25 24 44 44 H 1.09003 * 109.47225 * 59.99488 * 27 25 24 45 45 H 1.09002 * 109.47521 * 180.02562 * 27 25 24 46 46 H 1.09003 * 109.46990 * 300.00023 * 27 25 24 47 47 H 1.09008 * 109.46752 * 59.99870 * 28 25 24 48 48 H 1.08998 * 109.47432 * 179.97438 * 28 25 24 49 49 H 1.09003 * 109.46703 * 300.00039 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 6 2.3510 -2.1714 -0.6967 6 1 1.4437 -2.7746 -0.6651 7 7 3.3902 -2.8325 -1.4898 8 6 3.4514 -4.1998 -1.5347 9 1 2.7332 -4.7908 -0.9857 10 6 4.4358 -4.8262 -2.2867 11 7 4.4943 -6.1404 -2.3302 12 14 5.6776 -3.8040 -3.2368 13 1 6.8569 -3.5321 -2.3762 14 1 6.1091 -4.5485 -4.4470 15 1 5.0539 -2.5188 -3.6424 16 6 2.8585 -1.8562 0.7326 17 7 2.0336 -0.7208 1.1841 18 6 1.7800 -0.3953 2.4672 19 8 1.0841 0.5644 2.7231 20 6 2.3612 -1.2239 3.5837 21 6 1.9293 -0.6532 4.9100 22 7 2.5732 0.2700 5.6245 23 7 1.8772 0.4873 6.6887 24 7 0.8361 -0.2704 6.6637 25 6 -0.2007 -0.3240 7.6973 26 6 -0.2763 -1.7405 8.2707 27 6 0.1427 0.6618 8.8158 28 6 -1.5516 0.0510 7.0846 29 7 0.8522 -0.9738 5.5838 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8996 33 1 2.9657 -0.2833 -1.6182 34 1 1.2928 -0.7864 -2.0212 35 1 4.0351 -2.3018 -1.9831 36 1 5.1824 -6.5781 -2.8553 37 1 2.7103 -2.7161 1.3859 38 1 3.9111 -1.5743 0.7079 39 1 2.0057 -2.2506 3.4973 40 1 3.4492 -1.2095 3.5185 41 1 0.6861 -2.0076 8.7072 42 1 -1.0474 -1.7803 9.0401 43 1 -0.5212 -2.4425 7.4737 44 1 0.1964 1.6709 8.4070 45 1 -0.6284 0.6216 9.5851 46 1 1.1052 0.3951 9.2524 47 1 -1.7965 -0.6511 6.2875 48 1 -2.3231 0.0107 7.8535 49 1 -1.4976 1.0602 6.6761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988873721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:21 Heat of formation + Delta-G solvation = 105.703598 kcal Electronic energy + Delta-G solvation = -29492.876873 eV Core-core repulsion = 25493.706726 eV Total energy + Delta-G solvation = -3999.170147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.38238 -40.04623 -38.02855 -37.48636 -34.36094 -33.64378 -33.29532 -31.90248 -31.50100 -29.32364 -28.79314 -28.02534 -27.86812 -25.58305 -24.69419 -23.86336 -22.93336 -21.49136 -20.80409 -20.27849 -18.89136 -17.81911 -17.46454 -17.26903 -16.69857 -15.92237 -15.48354 -14.97238 -14.76982 -14.57207 -14.33928 -14.18006 -13.84417 -13.62089 -13.41833 -13.28940 -13.10589 -12.95582 -12.82745 -12.78850 -12.66395 -12.38854 -12.33101 -12.08642 -11.95501 -11.91524 -11.82036 -11.56440 -11.49137 -11.12667 -10.92904 -10.87991 -10.86793 -10.68777 -10.39728 -10.29314 -10.09095 -9.70652 -9.64454 -9.08427 -8.46422 -7.43947 -5.88114 -3.26524 1.22277 1.71849 2.10553 2.72086 3.10467 3.30971 3.33675 3.40022 3.67653 3.97925 4.06489 4.16652 4.46116 4.49034 4.53498 4.90449 4.94472 4.98446 5.00158 5.01335 5.10990 5.12212 5.14741 5.17516 5.19696 5.28952 5.38661 5.46497 5.47260 5.52251 5.58811 5.61503 5.69403 5.73929 5.75172 5.84943 5.85954 6.01147 6.08508 6.16082 6.17900 6.31917 6.41798 6.53713 6.69635 7.67748 7.85836 8.25397 8.30526 8.37381 9.06851 9.79030 9.96828 11.29384 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.002406 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.390543 B =11636.903797 C =12259.476838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.071 0.929 4 C -0.142 4.142 5 C 0.180 3.820 6 H 0.077 0.923 7 N -0.736 5.736 8 C -0.254 4.254 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.069 3.931 17 N -0.608 5.608 18 C 0.538 3.462 19 O -0.543 6.543 20 C -0.042 4.042 21 C 0.191 3.809 22 N -0.277 5.277 23 N -0.065 5.065 24 N -0.131 5.131 25 C 0.179 3.821 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.159 4.159 29 N -0.295 5.295 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.365 0.635 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 12.211 19.405 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.089 0.911 4 C -0.181 4.181 5 C 0.068 3.932 6 H 0.095 0.905 7 N -0.377 5.377 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.057 4.057 17 N -0.343 5.343 18 C 0.325 3.675 19 O -0.421 6.421 20 C -0.085 4.085 21 C -0.093 4.093 22 N -0.148 5.148 23 N -0.058 5.058 24 N -0.045 5.045 25 C 0.098 3.902 26 C -0.217 4.217 27 C -0.210 4.210 28 C -0.217 4.217 29 N -0.144 5.144 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.372 12.826 20.196 26.489 hybrid contribution 1.077 0.234 -1.189 1.621 sum -10.295 13.060 19.007 25.255 Atomic orbital electron populations 1.22124 0.94878 1.02464 1.02408 1.21564 0.94477 0.95834 0.84317 0.91068 1.23071 1.01779 0.97096 0.96158 1.21231 0.92652 0.91149 0.88186 0.90497 1.42673 1.34255 1.04456 1.56296 1.19069 1.12839 0.80503 1.25975 0.88950 1.24691 0.98828 0.95307 0.99833 1.69697 1.36126 1.06956 1.44712 0.86576 0.82199 0.79741 0.80142 1.20910 1.21644 1.20203 1.23506 0.95029 0.87298 0.99848 1.48642 1.50494 1.30859 1.04283 1.19696 0.80780 0.84795 0.82259 1.90685 1.39094 1.29036 1.83238 1.19860 1.03752 1.00362 0.84518 1.24623 0.89736 0.96132 0.98764 1.75800 1.23927 1.14932 1.00143 1.78869 0.95377 1.14480 1.17028 1.50397 1.17182 1.22683 1.14257 1.21352 0.84796 0.99422 0.84609 1.22229 1.03824 0.93243 1.02361 1.22081 1.03652 0.98901 0.96391 1.22231 0.93540 1.03404 1.02529 1.74549 1.22216 1.20143 0.97538 0.92251 0.91543 0.91929 0.90797 0.89870 0.80198 0.92866 0.90552 0.91000 0.85837 0.85633 0.91423 0.89247 0.90328 0.90617 0.89345 0.90637 0.90353 0.89306 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.06 37.16 0.34 -1.78 16 2 C 0.14 1.97 3.52 -66.70 -0.23 1.73 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.01 6.13 -24.90 -0.15 -2.17 16 5 C 0.18 3.06 3.71 -65.78 -0.24 2.81 16 6 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 7 N -0.74 -15.68 5.05 -51.35 -0.26 -15.94 16 8 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 11 N -0.93 -27.80 13.97 55.49 0.78 -27.03 16 12 Si 0.88 20.88 27.74 -169.99 -4.71 16.17 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.09 6.52 56.52 0.37 -5.72 16 16 C 0.07 1.04 6.39 -2.52 -0.02 1.02 16 17 N -0.61 -8.91 3.09 -162.66 -0.50 -9.41 16 18 C 0.54 8.32 7.63 -10.99 -0.08 8.24 16 19 O -0.54 -10.07 14.96 5.56 0.08 -9.98 16 20 C -0.04 -0.55 5.33 -29.03 -0.15 -0.70 16 21 C 0.19 2.84 6.86 -156.63 -1.07 1.77 16 22 N -0.28 -4.43 12.50 32.45 0.41 -4.02 16 23 N -0.07 -0.93 12.24 60.35 0.74 -0.19 16 24 N -0.13 -1.62 3.73 0.48 0.00 -1.62 16 25 C 0.18 1.40 1.30 -131.82 -0.17 1.23 16 26 C -0.16 -0.95 8.66 37.16 0.32 -0.63 16 27 C -0.15 -0.89 7.91 37.16 0.29 -0.59 16 28 C -0.16 -1.09 8.66 37.16 0.32 -0.77 16 29 N -0.29 -4.14 11.83 32.47 0.38 -3.76 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.99 6.79 -51.93 -0.35 0.63 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 34 H 0.08 1.10 7.83 -51.93 -0.41 0.69 16 35 H 0.36 7.68 5.63 -40.82 -0.23 7.45 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.10 7.48 -51.93 -0.39 0.71 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.12 1.37 7.85 -51.93 -0.41 0.96 16 40 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 48 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -34.07 398.96 -6.32 -40.39 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.13 Total: 5.81 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.11 Total: 3.58 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 1.54 Total: -61.98 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.71 Total: 16.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.07 -6.32 -40.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988873721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.096 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds