Wall clock time and date at job start Tue Mar 31 2020 21:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.99581 * 2 1 4 4 C 1.54323 * 109.88160 * 238.90072 * 2 1 3 5 5 C 1.55153 * 103.10236 * 262.86369 * 4 2 1 6 6 H 1.09003 * 111.00505 * 82.48412 * 5 4 2 7 7 N 1.46498 * 111.00625 * 206.29678 * 5 4 2 8 8 C 1.36936 * 119.99985 * 204.99665 * 7 5 4 9 9 H 1.07998 * 120.00161 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99633 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99756 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00102 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.46889 * 89.99756 * 12 10 8 14 14 H 1.48497 * 109.47186 * 209.99701 * 12 10 8 15 15 H 1.48499 * 109.47159 * 329.99901 * 12 10 8 16 16 C 1.54915 * 101.58175 * 324.40929 * 5 4 2 17 17 N 1.47428 * 104.83102 * 37.00975 * 16 5 4 18 18 C 1.34778 * 125.64750 * 155.83142 * 17 16 5 19 19 O 1.21277 * 119.99734 * 180.02562 * 18 17 16 20 20 C 1.50696 * 119.99826 * 0.02562 * 18 17 16 21 21 C 1.50710 * 109.46864 * 180.02562 * 20 18 17 22 22 N 1.33316 * 126.54750 * 269.69343 * 21 20 18 23 23 N 1.28998 * 107.34911 * 179.83785 * 22 21 20 24 24 N 1.28784 * 108.72822 * 0.42829 * 23 22 21 25 25 C 1.46493 * 125.44905 * 179.72809 * 24 23 22 26 26 C 1.53002 * 109.46968 * 239.99995 * 25 24 23 27 27 C 1.52998 * 109.47472 * 0.02562 * 25 24 23 28 28 C 1.53006 * 109.47223 * 120.00160 * 25 24 23 29 29 N 1.28887 * 109.09860 * 359.72879 * 24 23 22 30 30 H 1.08999 * 109.47076 * 181.10096 * 1 2 3 31 31 H 1.09005 * 109.46826 * 301.09789 * 1 2 3 32 32 H 1.08995 * 109.47029 * 61.09517 * 1 2 3 33 33 H 1.09002 * 110.72057 * 144.41120 * 4 2 1 34 34 H 1.09003 * 110.71837 * 21.31694 * 4 2 1 35 35 H 0.96999 * 120.00058 * 25.00481 * 7 5 4 36 36 H 0.96991 * 119.99714 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.36497 * 155.84404 * 16 5 4 38 38 H 1.08998 * 110.36590 * 278.17045 * 16 5 4 39 39 H 1.08994 * 109.48030 * 300.00087 * 20 18 17 40 40 H 1.09004 * 109.46986 * 60.00494 * 20 18 17 41 41 H 1.08999 * 109.46698 * 60.00660 * 26 25 24 42 42 H 1.09006 * 109.46733 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.47528 * 300.00246 * 26 25 24 44 44 H 1.09003 * 109.47225 * 59.99488 * 27 25 24 45 45 H 1.09002 * 109.47521 * 180.02562 * 27 25 24 46 46 H 1.09003 * 109.46990 * 300.00023 * 27 25 24 47 47 H 1.09008 * 109.46752 * 59.99870 * 28 25 24 48 48 H 1.08998 * 109.47432 * 179.97438 * 28 25 24 49 49 H 1.09003 * 109.46703 * 300.00039 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 6 2.3510 -2.1714 -0.6967 6 1 1.4437 -2.7746 -0.6651 7 7 3.3902 -2.8325 -1.4898 8 6 3.4514 -4.1998 -1.5347 9 1 2.7332 -4.7908 -0.9857 10 6 4.4358 -4.8262 -2.2867 11 7 4.4943 -6.1404 -2.3302 12 14 5.6776 -3.8040 -3.2368 13 1 6.8569 -3.5321 -2.3762 14 1 6.1091 -4.5485 -4.4470 15 1 5.0539 -2.5188 -3.6424 16 6 2.8585 -1.8562 0.7326 17 7 2.0336 -0.7208 1.1841 18 6 1.7800 -0.3953 2.4672 19 8 1.0841 0.5644 2.7231 20 6 2.3612 -1.2239 3.5837 21 6 1.9293 -0.6532 4.9100 22 7 2.5732 0.2700 5.6245 23 7 1.8772 0.4873 6.6887 24 7 0.8361 -0.2704 6.6637 25 6 -0.2007 -0.3240 7.6973 26 6 -0.2763 -1.7405 8.2707 27 6 0.1427 0.6618 8.8158 28 6 -1.5516 0.0510 7.0846 29 7 0.8522 -0.9738 5.5838 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8996 33 1 2.9657 -0.2833 -1.6182 34 1 1.2928 -0.7864 -2.0212 35 1 4.0351 -2.3018 -1.9831 36 1 5.1824 -6.5781 -2.8553 37 1 2.7103 -2.7161 1.3859 38 1 3.9111 -1.5743 0.7079 39 1 2.0057 -2.2506 3.4973 40 1 3.4492 -1.2095 3.5185 41 1 0.6861 -2.0076 8.7072 42 1 -1.0474 -1.7803 9.0401 43 1 -0.5212 -2.4425 7.4737 44 1 0.1964 1.6709 8.4070 45 1 -0.6284 0.6216 9.5851 46 1 1.1052 0.3951 9.2524 47 1 -1.7965 -0.6511 6.2875 48 1 -2.3231 0.0107 7.8535 49 1 -1.4976 1.0602 6.6761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988873721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:20 Heat of formation + Delta-G solvation = 82.290213 kcal Electronic energy + Delta-G solvation = -29493.892154 eV Core-core repulsion = 25493.706726 eV Total energy + Delta-G solvation = -4000.185428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.41679 -41.28210 -39.00598 -38.51715 -36.06767 -34.72959 -34.27124 -33.49458 -32.91819 -30.49569 -30.17384 -28.53287 -28.41220 -26.76174 -25.68484 -25.52563 -24.19093 -22.76264 -21.74989 -21.53154 -20.11818 -19.65903 -18.57721 -18.01503 -17.85228 -17.21070 -16.69193 -16.44558 -15.76695 -15.70241 -15.25763 -15.19716 -15.07850 -14.88221 -14.64441 -14.44114 -14.31600 -14.14610 -13.92188 -13.47180 -13.43539 -13.34793 -13.23755 -13.14986 -13.02202 -12.88956 -12.86519 -12.81558 -12.57486 -12.26142 -12.17790 -12.14743 -11.96719 -11.92405 -11.87835 -11.78455 -11.43429 -11.35625 -11.02293 -10.78804 -9.73278 -9.30901 -7.97990 -5.33307 0.19227 0.89732 1.01130 1.44639 1.46773 1.51354 1.53985 1.93898 2.53109 2.75674 3.12249 3.29266 3.32175 3.51158 3.56961 3.65275 3.73320 3.82545 3.88078 4.07658 4.15766 4.33552 4.37420 4.43348 4.44550 4.47862 4.48576 4.51418 4.59174 4.60581 4.69714 4.70851 4.71895 4.74480 4.84242 4.92132 5.00865 5.02345 5.10162 5.14380 5.21040 5.24212 5.32393 5.34396 5.45212 5.82176 6.25353 6.45747 7.03796 7.11305 7.30545 7.84842 8.03677 9.22751 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.002406 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.390543 B =11636.903797 C =12259.476838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.129 4.129 5 C 0.171 3.829 6 H 0.068 0.932 7 N -0.737 5.737 8 C -0.229 4.229 9 H 0.063 0.937 10 C -0.060 4.060 11 N -0.982 5.982 12 Si 0.949 3.051 13 H -0.279 1.279 14 H -0.302 1.302 15 H -0.247 1.247 16 C 0.078 3.922 17 N -0.605 5.605 18 C 0.538 3.462 19 O -0.576 6.576 20 C -0.040 4.040 21 C 0.178 3.822 22 N -0.308 5.308 23 N -0.076 5.076 24 N -0.118 5.118 25 C 0.161 3.839 26 C -0.153 4.153 27 C -0.148 4.148 28 C -0.154 4.154 29 N -0.304 5.304 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.369 0.631 36 H 0.257 0.743 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.061 0.939 42 H 0.126 0.874 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.126 0.874 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.128 0.872 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 13.758 20.213 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.167 4.167 5 C 0.061 3.939 6 H 0.086 0.914 7 N -0.379 5.379 8 C -0.360 4.360 9 H 0.081 0.919 10 C -0.252 4.252 11 N -0.632 5.632 12 Si 0.777 3.223 13 H -0.206 1.206 14 H -0.230 1.230 15 H -0.171 1.171 16 C -0.047 4.047 17 N -0.338 5.338 18 C 0.326 3.674 19 O -0.456 6.456 20 C -0.082 4.082 21 C -0.105 4.105 22 N -0.178 5.178 23 N -0.068 5.068 24 N -0.034 5.034 25 C 0.082 3.918 26 C -0.211 4.211 27 C -0.206 4.206 28 C -0.213 4.213 29 N -0.155 5.155 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.203 0.797 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.144 0.856 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.146 0.854 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.082 14.439 21.027 28.224 hybrid contribution 1.106 -0.232 -1.307 1.727 sum -10.976 14.208 19.720 26.669 Atomic orbital electron populations 1.22058 0.94283 1.02176 1.02619 1.21662 0.94954 0.95932 0.83851 0.90668 1.22989 1.02678 0.94646 0.96409 1.21376 0.91200 0.92412 0.88948 0.91438 1.42594 1.35443 1.02729 1.57163 1.19023 1.10923 0.82453 1.23635 0.91858 1.25460 1.01518 0.96292 1.01902 1.69875 1.37495 1.09115 1.46708 0.85497 0.79666 0.79066 0.78060 1.20572 1.22972 1.17143 1.23270 0.95116 0.87722 0.98572 1.48631 1.50186 1.30570 1.04446 1.20037 0.80173 0.84464 0.82720 1.90671 1.40657 1.30604 1.83675 1.19960 1.04703 1.00598 0.82946 1.24931 0.89967 0.96243 0.99403 1.75747 1.25132 1.15950 1.00983 1.78779 0.96097 1.15076 1.16860 1.50975 1.17089 1.21149 1.14209 1.22029 0.84152 1.01322 0.84304 1.22255 1.04770 0.91390 1.02706 1.22135 1.04714 0.97421 0.96354 1.22258 0.93985 1.01805 1.03227 1.74516 1.22105 1.20710 0.98185 0.92646 0.93435 0.89689 0.89838 0.88519 0.79655 0.93438 0.89962 0.90564 0.84000 0.83891 0.91998 0.85573 0.91645 0.91902 0.85564 0.91251 0.91973 0.85395 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.06 71.98 0.65 -3.14 16 2 C 0.14 3.59 3.52 45.25 0.16 3.75 16 3 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.13 -3.28 6.13 31.78 0.19 -3.09 16 5 C 0.17 5.50 3.71 46.38 0.17 5.67 16 6 H 0.07 2.32 8.09 -2.39 -0.02 2.31 16 7 N -0.74 -30.08 5.05 -316.37 -1.60 -31.68 16 8 C -0.23 -11.88 10.44 84.04 0.88 -11.01 16 9 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 10 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 11 N -0.98 -60.15 13.97 21.65 0.30 -59.85 16 12 Si 0.95 42.60 27.74 68.60 1.90 44.51 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 14 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 15 H -0.25 -9.77 6.52 99.48 0.65 -9.12 16 16 C 0.08 2.23 6.39 86.86 0.55 2.79 16 17 N -0.60 -16.81 3.09 -786.94 -2.44 -19.25 16 18 C 0.54 16.24 7.63 87.66 0.67 16.91 16 19 O -0.58 -21.32 14.96 -3.02 -0.05 -21.36 16 20 C -0.04 -1.01 5.33 29.10 0.16 -0.85 16 21 C 0.18 5.29 6.86 138.56 0.95 6.25 16 22 N -0.31 -9.95 12.50 -51.26 -0.64 -10.59 16 23 N -0.08 -2.20 12.24 37.02 0.45 -1.75 16 24 N -0.12 -2.90 3.73 -152.40 -0.57 -3.47 16 25 C 0.16 2.30 1.30 3.61 0.00 2.30 16 26 C -0.15 -1.54 8.66 71.98 0.62 -0.92 16 27 C -0.15 -1.47 7.91 71.98 0.57 -0.90 16 28 C -0.15 -1.89 8.66 71.98 0.62 -1.27 16 29 N -0.30 -8.57 11.83 -51.20 -0.61 -9.17 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.37 6.79 -2.38 -0.02 1.36 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 2.02 8.00 -2.39 -0.02 2.01 16 34 H 0.10 2.24 7.83 -2.39 -0.02 2.22 16 35 H 0.37 14.47 5.63 -92.71 -0.52 13.95 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 37 H 0.08 2.25 7.48 -2.39 -0.02 2.23 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.14 2.99 7.85 -2.39 -0.02 2.97 16 40 H 0.14 3.05 8.14 -2.38 -0.02 3.03 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.13 0.33 8.14 -2.38 -0.02 0.32 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -75.90 398.96 3.80 -72.09 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.36 Total: 26.87 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.67 Total: 13.64 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -5.09 Total: -135.75 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.90 Total: 44.51 kcal Total: -75.90 3.80 -72.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988873721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.382 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds