Wall clock time and date at job start Tue Mar 31 2020 21:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.87184 * 2 1 4 4 C 1.54329 * 109.88290 * 121.17692 * 2 1 3 5 5 C 1.55152 * 102.94136 * 141.61035 * 4 2 1 6 6 H 1.09007 * 111.04050 * 82.58431 * 5 4 2 7 7 N 1.46504 * 111.00522 * 206.42473 * 5 4 2 8 8 C 1.36935 * 119.99849 * 198.65251 * 7 5 4 9 9 H 1.07997 * 120.00561 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99619 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00121 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 119.99829 * 12 10 8 15 15 H 1.48498 * 109.47295 * 240.00436 * 12 10 8 16 16 C 1.54915 * 101.58422 * 324.49604 * 5 4 2 17 17 N 1.47023 * 109.88399 * 238.98562 * 2 1 3 18 18 C 1.34777 * 125.64826 * 61.67575 * 17 2 1 19 19 O 1.21281 * 120.00040 * 359.97438 * 18 17 2 20 20 C 1.50704 * 120.00208 * 179.97438 * 18 17 2 21 21 C 1.50692 * 109.47285 * 180.02562 * 20 18 17 22 22 N 1.33321 * 126.54668 * 269.68344 * 21 20 18 23 23 N 1.29000 * 107.35402 * 179.83638 * 22 21 20 24 24 N 1.28785 * 108.72393 * 0.43070 * 23 22 21 25 25 C 1.46496 * 125.44672 * 179.72757 * 24 23 22 26 26 C 1.53003 * 109.46825 * 240.00094 * 25 24 23 27 27 C 1.52997 * 109.47139 * 359.97438 * 25 24 23 28 28 C 1.52997 * 109.47105 * 120.00350 * 25 24 23 29 29 N 1.28884 * 109.09998 * 359.72637 * 24 23 22 30 30 H 1.09003 * 109.46915 * 179.55834 * 1 2 3 31 31 H 1.09003 * 109.47320 * 299.56213 * 1 2 3 32 32 H 1.09001 * 109.47290 * 59.56563 * 1 2 3 33 33 H 1.08996 * 110.71726 * 23.24892 * 4 2 1 34 34 H 1.09001 * 110.71894 * 259.97327 * 4 2 1 35 35 H 0.96996 * 119.99617 * 18.64937 * 7 5 4 36 36 H 0.97000 * 119.99517 * 0.02562 * 11 10 8 37 37 H 1.09005 * 110.36569 * 155.84385 * 16 5 4 38 38 H 1.08992 * 110.36839 * 278.17371 * 16 5 4 39 39 H 1.09000 * 109.46374 * 300.00222 * 20 18 17 40 40 H 1.09001 * 109.46878 * 59.99434 * 20 18 17 41 41 H 1.09001 * 109.46864 * 60.00157 * 26 25 24 42 42 H 1.08997 * 109.47023 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47408 * 299.99996 * 26 25 24 44 44 H 1.09008 * 109.46982 * 60.00686 * 27 25 24 45 45 H 1.09007 * 109.46985 * 180.02562 * 27 25 24 46 46 H 1.08997 * 109.47927 * 300.00095 * 27 25 24 47 47 H 1.09002 * 109.47200 * 59.99960 * 28 25 24 48 48 H 1.09007 * 109.47069 * 179.97438 * 28 25 24 49 49 H 1.08999 * 109.47209 * 299.99642 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 6 3.2876 -1.5152 0.6903 6 1 4.1659 -0.8703 0.6591 7 7 3.5532 -2.7217 1.4778 8 6 4.7818 -3.3231 1.4157 9 1 5.5549 -2.9084 0.7859 10 6 5.0336 -4.4660 2.1623 11 7 4.0916 -4.9712 2.9302 12 14 6.7093 -5.2869 2.0771 13 1 7.5855 -4.5283 1.1486 14 1 7.3210 -5.3052 3.4302 15 1 6.5540 -6.6794 1.5852 16 6 2.8145 -1.8784 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.8085 -0.3578 -2.4662 19 8 1.1451 0.6260 -2.7171 20 6 2.3852 -1.1837 -3.5871 21 6 1.9945 -0.5774 -4.9102 22 7 0.9050 -0.8631 -5.6236 23 7 0.9372 -0.1309 -6.6851 24 7 2.0058 0.5874 -6.6597 25 6 2.4094 1.5468 -7.6906 26 6 3.7648 1.1345 -8.2683 27 6 1.3638 1.5653 -8.8074 28 6 2.5214 2.9421 -7.0729 29 7 2.6633 0.3271 -5.5822 30 1 -0.3633 -1.0277 -0.0079 31 1 -0.3634 0.5070 0.8939 32 1 -0.3634 0.5206 -0.8861 33 1 1.3051 -1.4482 1.6162 34 1 2.3529 -0.0488 2.0200 35 1 2.8587 -3.0944 2.0432 36 1 3.2213 -4.5451 2.9741 37 1 3.6716 -2.0318 -1.3952 38 1 2.1886 -2.7705 -0.7168 39 1 3.4718 -1.2019 -3.5029 40 1 1.9989 -2.2010 -3.5248 41 1 3.6849 0.1405 -8.7084 42 1 4.0653 1.8486 -9.0350 43 1 4.5099 1.1209 -7.4729 44 1 0.3980 1.8589 -8.3960 45 1 1.6644 2.2789 -9.5747 46 1 1.2843 0.5713 -9.2474 47 1 3.2666 2.9285 -6.2775 48 1 2.8222 3.6559 -7.8399 49 1 1.5559 3.2358 -6.6612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988873724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:35 Heat of formation + Delta-G solvation = 101.467118 kcal Electronic energy + Delta-G solvation = -29464.992351 eV Core-core repulsion = 25465.638496 eV Total energy + Delta-G solvation = -3999.353855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.39136 -40.03960 -38.03220 -37.46282 -34.53612 -33.65190 -33.30166 -31.86307 -31.41639 -29.30258 -28.19063 -28.03849 -27.85977 -25.51222 -24.69732 -23.81575 -23.03686 -21.46597 -20.80327 -20.45348 -18.81628 -17.59978 -17.40004 -17.27828 -16.79011 -16.07099 -15.35045 -14.98423 -14.75929 -14.60257 -14.55192 -14.06686 -13.86592 -13.67424 -13.45463 -13.42091 -13.10425 -12.96291 -12.85117 -12.81864 -12.62791 -12.34392 -12.30854 -12.11682 -11.95259 -11.94184 -11.76252 -11.50652 -11.13545 -10.93917 -10.91862 -10.87326 -10.73013 -10.57007 -10.35788 -10.27749 -10.09879 -9.65143 -9.27779 -9.06091 -8.43745 -7.19776 -6.20976 -3.23874 1.21269 1.70848 2.09797 2.72101 3.12534 3.47213 3.52949 3.62259 3.66743 3.97172 4.05307 4.15451 4.44898 4.50907 4.63665 4.89590 4.93062 4.98747 4.99981 5.03896 5.09688 5.13121 5.16275 5.16451 5.18682 5.37635 5.42317 5.45317 5.50565 5.57237 5.60024 5.62387 5.68578 5.69499 5.75212 5.84402 5.97742 6.01851 6.06616 6.16541 6.25847 6.35232 6.38425 6.57678 6.73288 7.68505 7.72001 8.25992 8.36476 8.64776 9.08177 9.94842 10.07978 11.26897 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.002474 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.623537 B =11314.849518 C =12481.491439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.178 3.822 6 H 0.066 0.934 7 N -0.724 5.724 8 C -0.340 4.340 9 H 0.068 0.932 10 C -0.040 4.040 11 N -0.940 5.940 12 Si 1.085 2.915 13 H -0.294 1.294 14 H -0.292 1.292 15 H -0.292 1.292 16 C 0.071 3.929 17 N -0.607 5.607 18 C 0.537 3.463 19 O -0.544 6.544 20 C -0.042 4.042 21 C 0.191 3.809 22 N -0.277 5.277 23 N -0.065 5.065 24 N -0.132 5.132 25 C 0.179 3.821 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.159 4.159 29 N -0.295 5.295 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.370 0.630 36 H 0.257 0.743 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 14.553 -20.796 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.066 3.934 6 H 0.084 0.916 7 N -0.365 5.365 8 C -0.471 4.471 9 H 0.086 0.914 10 C -0.238 4.238 11 N -0.584 5.584 12 Si 0.915 3.085 13 H -0.220 1.220 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.055 4.055 17 N -0.341 5.341 18 C 0.324 3.676 19 O -0.421 6.421 20 C -0.084 4.084 21 C -0.092 4.092 22 N -0.147 5.147 23 N -0.057 5.057 24 N -0.045 5.045 25 C 0.098 3.902 26 C -0.216 4.216 27 C -0.210 4.210 28 C -0.217 4.217 29 N -0.145 5.145 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.204 0.796 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.709 14.009 -21.122 25.490 hybrid contribution -0.838 0.982 0.015 1.291 sum -3.547 14.991 -21.107 26.131 Atomic orbital electron populations 1.22131 0.95051 1.02276 1.02436 1.21492 0.94304 0.96050 0.84384 0.90961 1.23015 0.98964 0.99657 0.95945 1.21214 0.94608 0.89054 0.88542 0.91591 1.42337 1.13904 1.28463 1.51825 1.20095 0.90466 1.09930 1.26567 0.91400 1.25802 1.05734 0.95855 0.96429 1.70831 1.04604 1.42525 1.40490 0.83162 0.73849 0.75701 0.75742 1.22005 1.21948 1.21911 1.23531 0.94524 0.87511 0.99917 1.48549 1.52183 1.29115 1.04289 1.19697 0.80562 0.85036 0.82309 1.90685 1.40304 1.27764 1.83397 1.19848 1.03885 1.00133 0.84581 1.24613 0.90457 0.95397 0.98757 1.75806 1.19536 1.19194 1.00208 1.78873 1.06832 1.02985 1.17030 1.50398 1.12377 1.27376 1.14380 1.21352 0.97388 0.86755 0.84687 1.22229 0.94113 1.02987 1.02320 1.22082 0.98186 1.04353 0.96406 1.22229 1.04194 0.92800 1.02483 1.74541 1.24677 1.17625 0.97671 0.92469 0.91901 0.91582 0.90450 0.90248 0.79567 0.93190 0.90976 0.91044 0.85953 0.85648 0.91416 0.89243 0.90368 0.90604 0.89340 0.90627 0.90374 0.89299 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.10 37.16 0.34 -1.91 16 2 C 0.14 2.08 3.46 -66.95 -0.23 1.85 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -2.08 6.10 -24.90 -0.15 -2.23 16 5 C 0.18 3.23 3.69 -65.78 -0.24 2.99 16 6 H 0.07 1.24 8.13 -51.92 -0.42 0.82 16 7 N -0.72 -16.58 5.27 -51.35 -0.27 -16.85 16 8 C -0.34 -8.87 9.98 -15.06 -0.15 -9.02 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.04 -1.10 5.50 -17.43 -0.10 -1.20 16 11 N -0.94 -27.77 13.70 55.49 0.76 -27.01 16 12 Si 1.08 24.83 29.92 -169.99 -5.09 19.75 16 13 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 16 C 0.07 1.15 6.39 -2.52 -0.02 1.13 16 17 N -0.61 -9.37 3.06 -163.01 -0.50 -9.86 16 18 C 0.54 8.62 7.64 -10.98 -0.08 8.54 16 19 O -0.54 -10.37 15.07 5.56 0.08 -10.29 16 20 C -0.04 -0.56 5.33 -29.04 -0.15 -0.72 16 21 C 0.19 2.90 6.86 -156.63 -1.07 1.82 16 22 N -0.28 -4.49 12.50 32.44 0.41 -4.08 16 23 N -0.06 -0.94 12.24 60.35 0.74 -0.20 16 24 N -0.13 -1.64 3.73 0.48 0.00 -1.64 16 25 C 0.18 1.41 1.30 -131.82 -0.17 1.24 16 26 C -0.16 -0.95 8.66 37.16 0.32 -0.63 16 27 C -0.15 -0.90 7.91 37.16 0.29 -0.60 16 28 C -0.16 -1.10 8.66 37.16 0.32 -0.78 16 29 N -0.30 -4.20 11.83 32.46 0.38 -3.82 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.03 6.88 -51.93 -0.36 0.67 16 33 H 0.08 1.19 7.70 -51.93 -0.40 0.79 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.37 8.80 6.54 -40.82 -0.27 8.53 16 36 H 0.26 7.43 6.77 -40.82 -0.28 7.15 16 37 H 0.07 1.10 7.48 -51.93 -0.39 0.71 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.12 1.39 7.85 -51.93 -0.41 0.99 16 40 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.34 8.14 -51.92 -0.42 -0.09 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -34.16 400.54 -6.61 -40.77 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -8.07 Total: 6.72 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.10 Total: 0.48 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 1.52 Total: -63.46 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.75 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.16 -6.61 -40.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988873724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.233 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds