Wall clock time and date at job start Tue Mar 31 2020 21:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.87184 * 2 1 4 4 C 1.54329 * 109.88290 * 121.17692 * 2 1 3 5 5 C 1.55152 * 102.94136 * 141.61035 * 4 2 1 6 6 H 1.09007 * 111.04050 * 82.58431 * 5 4 2 7 7 N 1.46504 * 111.00522 * 206.42473 * 5 4 2 8 8 C 1.36935 * 119.99849 * 198.65251 * 7 5 4 9 9 H 1.07997 * 120.00561 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99619 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00121 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 119.99829 * 12 10 8 15 15 H 1.48498 * 109.47295 * 240.00436 * 12 10 8 16 16 C 1.54915 * 101.58422 * 324.49604 * 5 4 2 17 17 N 1.47023 * 109.88399 * 238.98562 * 2 1 3 18 18 C 1.34777 * 125.64826 * 61.67575 * 17 2 1 19 19 O 1.21281 * 120.00040 * 359.97438 * 18 17 2 20 20 C 1.50704 * 120.00208 * 179.97438 * 18 17 2 21 21 C 1.50692 * 109.47285 * 180.02562 * 20 18 17 22 22 N 1.33321 * 126.54668 * 269.68344 * 21 20 18 23 23 N 1.29000 * 107.35402 * 179.83638 * 22 21 20 24 24 N 1.28785 * 108.72393 * 0.43070 * 23 22 21 25 25 C 1.46496 * 125.44672 * 179.72757 * 24 23 22 26 26 C 1.53003 * 109.46825 * 240.00094 * 25 24 23 27 27 C 1.52997 * 109.47139 * 359.97438 * 25 24 23 28 28 C 1.52997 * 109.47105 * 120.00350 * 25 24 23 29 29 N 1.28884 * 109.09998 * 359.72637 * 24 23 22 30 30 H 1.09003 * 109.46915 * 179.55834 * 1 2 3 31 31 H 1.09003 * 109.47320 * 299.56213 * 1 2 3 32 32 H 1.09001 * 109.47290 * 59.56563 * 1 2 3 33 33 H 1.08996 * 110.71726 * 23.24892 * 4 2 1 34 34 H 1.09001 * 110.71894 * 259.97327 * 4 2 1 35 35 H 0.96996 * 119.99617 * 18.64937 * 7 5 4 36 36 H 0.97000 * 119.99517 * 0.02562 * 11 10 8 37 37 H 1.09005 * 110.36569 * 155.84385 * 16 5 4 38 38 H 1.08992 * 110.36839 * 278.17371 * 16 5 4 39 39 H 1.09000 * 109.46374 * 300.00222 * 20 18 17 40 40 H 1.09001 * 109.46878 * 59.99434 * 20 18 17 41 41 H 1.09001 * 109.46864 * 60.00157 * 26 25 24 42 42 H 1.08997 * 109.47023 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47408 * 299.99996 * 26 25 24 44 44 H 1.09008 * 109.46982 * 60.00686 * 27 25 24 45 45 H 1.09007 * 109.46985 * 180.02562 * 27 25 24 46 46 H 1.08997 * 109.47927 * 300.00095 * 27 25 24 47 47 H 1.09002 * 109.47200 * 59.99960 * 28 25 24 48 48 H 1.09007 * 109.47069 * 179.97438 * 28 25 24 49 49 H 1.08999 * 109.47209 * 299.99642 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 6 3.2876 -1.5152 0.6903 6 1 4.1659 -0.8703 0.6591 7 7 3.5532 -2.7217 1.4778 8 6 4.7818 -3.3231 1.4157 9 1 5.5549 -2.9084 0.7859 10 6 5.0336 -4.4660 2.1623 11 7 4.0916 -4.9712 2.9302 12 14 6.7093 -5.2869 2.0771 13 1 7.5855 -4.5283 1.1486 14 1 7.3210 -5.3052 3.4302 15 1 6.5540 -6.6794 1.5852 16 6 2.8145 -1.8784 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.8085 -0.3578 -2.4662 19 8 1.1451 0.6260 -2.7171 20 6 2.3852 -1.1837 -3.5871 21 6 1.9945 -0.5774 -4.9102 22 7 0.9050 -0.8631 -5.6236 23 7 0.9372 -0.1309 -6.6851 24 7 2.0058 0.5874 -6.6597 25 6 2.4094 1.5468 -7.6906 26 6 3.7648 1.1345 -8.2683 27 6 1.3638 1.5653 -8.8074 28 6 2.5214 2.9421 -7.0729 29 7 2.6633 0.3271 -5.5822 30 1 -0.3633 -1.0277 -0.0079 31 1 -0.3634 0.5070 0.8939 32 1 -0.3634 0.5206 -0.8861 33 1 1.3051 -1.4482 1.6162 34 1 2.3529 -0.0488 2.0200 35 1 2.8587 -3.0944 2.0432 36 1 3.2213 -4.5451 2.9741 37 1 3.6716 -2.0318 -1.3952 38 1 2.1886 -2.7705 -0.7168 39 1 3.4718 -1.2019 -3.5029 40 1 1.9989 -2.2010 -3.5248 41 1 3.6849 0.1405 -8.7084 42 1 4.0653 1.8486 -9.0350 43 1 4.5099 1.1209 -7.4729 44 1 0.3980 1.8589 -8.3960 45 1 1.6644 2.2789 -9.5747 46 1 1.2843 0.5713 -9.2474 47 1 3.2666 2.9285 -6.2775 48 1 2.8222 3.6559 -7.8399 49 1 1.5559 3.2358 -6.6612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988873724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:34 Heat of formation + Delta-G solvation = 78.642855 kcal Electronic energy + Delta-G solvation = -29465.982086 eV Core-core repulsion = 25465.638496 eV Total energy + Delta-G solvation = -4000.343589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.43975 -41.34292 -39.03921 -38.53856 -36.31346 -34.76030 -34.29504 -33.30750 -32.91367 -30.38802 -29.77824 -28.54382 -28.42353 -26.78803 -25.72606 -25.63093 -24.27510 -22.73090 -21.91199 -21.59982 -20.10416 -19.37494 -18.61195 -18.07285 -17.94747 -17.37255 -16.78828 -16.23656 -16.11506 -15.72523 -15.38193 -15.20603 -15.16350 -15.01085 -14.66445 -14.36104 -14.33915 -14.16898 -13.82655 -13.49579 -13.45942 -13.25128 -13.24450 -13.11148 -12.89819 -12.87526 -12.75334 -12.60360 -12.57975 -12.31073 -12.19413 -12.03423 -11.98833 -11.90503 -11.81427 -11.74729 -11.38325 -11.19053 -11.00573 -10.82529 -9.76767 -9.12935 -8.33609 -5.30576 0.17006 0.87322 0.98585 1.45896 1.64377 1.74142 1.85338 1.89908 2.71563 2.75549 3.10061 3.28262 3.41655 3.50001 3.54970 3.63791 3.71905 3.77244 3.88824 4.05618 4.11924 4.24278 4.32304 4.38223 4.41937 4.42637 4.46481 4.50383 4.56692 4.58225 4.65442 4.69800 4.70656 4.71047 4.76260 4.79778 4.99682 5.00700 5.04360 5.09140 5.16665 5.19959 5.31900 5.32117 5.34610 5.67316 6.40704 6.55188 6.98446 7.11101 7.28233 8.00738 8.11405 9.18087 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.002474 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.623537 B =11314.849518 C =12481.491439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.124 4.124 5 C 0.170 3.830 6 H 0.063 0.937 7 N -0.735 5.735 8 C -0.327 4.327 9 H 0.073 0.927 10 C -0.101 4.101 11 N -0.977 5.977 12 Si 1.128 2.872 13 H -0.269 1.269 14 H -0.296 1.296 15 H -0.294 1.294 16 C 0.084 3.916 17 N -0.604 5.604 18 C 0.538 3.462 19 O -0.576 6.576 20 C -0.039 4.039 21 C 0.177 3.823 22 N -0.309 5.309 23 N -0.076 5.076 24 N -0.118 5.118 25 C 0.161 3.839 26 C -0.153 4.153 27 C -0.149 4.149 28 C -0.155 4.155 29 N -0.303 5.303 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.364 0.636 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.061 0.939 42 H 0.126 0.874 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.126 0.874 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.128 0.872 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 15.921 -22.595 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.163 4.163 5 C 0.060 3.940 6 H 0.081 0.919 7 N -0.376 5.376 8 C -0.459 4.459 9 H 0.091 0.909 10 C -0.292 4.292 11 N -0.625 5.625 12 Si 0.954 3.046 13 H -0.193 1.193 14 H -0.223 1.223 15 H -0.221 1.221 16 C -0.041 4.041 17 N -0.337 5.337 18 C 0.326 3.674 19 O -0.456 6.456 20 C -0.081 4.081 21 C -0.106 4.106 22 N -0.179 5.179 23 N -0.068 5.068 24 N -0.034 5.034 25 C 0.082 3.918 26 C -0.211 4.211 27 C -0.206 4.206 28 C -0.213 4.213 29 N -0.154 5.154 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.197 0.803 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.080 0.920 42 H 0.145 0.855 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.145 0.855 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.147 0.853 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.549 15.421 -22.961 27.702 hybrid contribution -1.224 0.732 0.476 1.503 sum -2.773 16.153 -22.485 27.824 Atomic orbital electron populations 1.22052 0.94314 1.02058 1.02644 1.21562 0.94865 0.96059 0.83838 0.90585 1.22919 0.97475 0.99487 0.96383 1.21372 0.95821 0.87617 0.89233 0.91860 1.42459 1.12896 1.29697 1.52580 1.20406 0.91458 1.09165 1.24844 0.90925 1.27048 1.08104 0.97311 0.96775 1.70936 1.04932 1.43743 1.42899 0.82601 0.71009 0.75068 0.75961 1.19338 1.22313 1.22131 1.23223 0.94839 0.87310 0.98759 1.48537 1.51905 1.28779 1.04512 1.20082 0.79930 0.84712 0.82708 1.90672 1.41805 1.29319 1.83798 1.19935 1.05062 1.00127 0.82953 1.24889 0.90471 0.95839 0.99369 1.75755 1.20524 1.20501 1.01088 1.78785 1.07672 1.03479 1.16838 1.50990 1.11319 1.26751 1.14316 1.22043 0.99092 0.86336 0.84361 1.22257 0.92361 1.03796 1.02682 1.22139 0.97020 1.05109 0.96383 1.22258 1.02827 0.93002 1.03203 1.74505 1.25061 1.17545 0.98283 0.92829 0.89707 0.93350 0.90502 0.88912 0.80340 0.94262 0.89733 0.91788 0.83770 0.84144 0.91971 0.85543 0.91600 0.91952 0.85522 0.91233 0.91939 0.85346 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.10 71.98 0.66 -3.44 16 2 C 0.14 3.94 3.46 45.34 0.16 4.10 16 3 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.12 -3.59 6.10 31.78 0.19 -3.40 16 5 C 0.17 5.96 3.69 46.38 0.17 6.13 16 6 H 0.06 2.28 8.13 -2.38 -0.02 2.26 16 7 N -0.74 -33.32 5.27 -316.36 -1.67 -34.99 16 8 C -0.33 -16.82 9.98 84.03 0.84 -15.99 16 9 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 10 C -0.10 -5.51 5.50 84.86 0.47 -5.04 16 11 N -0.98 -58.40 13.70 21.65 0.30 -58.11 16 12 Si 1.13 49.55 29.92 68.60 2.05 51.60 16 13 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 14 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 16 C 0.08 2.61 6.39 86.86 0.55 3.16 16 17 N -0.60 -17.94 3.06 -788.02 -2.41 -20.36 16 18 C 0.54 16.88 7.64 87.66 0.67 17.55 16 19 O -0.58 -21.95 15.07 -3.03 -0.05 -22.00 16 20 C -0.04 -1.00 5.33 29.10 0.16 -0.85 16 21 C 0.18 5.35 6.86 138.55 0.95 6.30 16 22 N -0.31 -10.12 12.50 -51.27 -0.64 -10.76 16 23 N -0.08 -2.21 12.24 37.02 0.45 -1.76 16 24 N -0.12 -2.89 3.73 -152.40 -0.57 -3.46 16 25 C 0.16 2.28 1.30 3.60 0.00 2.28 16 26 C -0.15 -1.49 8.66 71.98 0.62 -0.86 16 27 C -0.15 -1.47 7.91 71.98 0.57 -0.90 16 28 C -0.15 -1.88 8.66 71.98 0.62 -1.26 16 29 N -0.30 -8.54 11.83 -51.21 -0.61 -9.14 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.49 6.88 -2.39 -0.02 1.47 16 33 H 0.08 2.27 7.70 -2.39 -0.02 2.25 16 34 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.36 17.39 6.54 -92.71 -0.61 16.79 16 36 H 0.25 14.59 6.77 -92.71 -0.63 13.97 16 37 H 0.08 2.42 7.48 -2.38 -0.02 2.40 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.14 3.04 7.85 -2.39 -0.02 3.02 16 40 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.13 0.27 8.14 -2.38 -0.02 0.25 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 49 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -74.92 400.54 3.97 -70.94 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.48 Total: 30.23 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.63 Total: 7.79 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -5.15 Total: -138.57 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Total: -74.92 3.97 -70.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988873724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.585 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds