Wall clock time and date at job start Tue Mar 31 2020 21:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.69966 * 2 1 4 4 C 1.53191 * 109.58369 * 239.64287 * 2 1 3 5 5 H 1.09004 * 109.52363 * 65.60972 * 4 2 1 6 6 N 1.46497 * 109.49995 * 305.52986 * 4 2 1 7 7 C 1.34774 * 119.99693 * 155.44057 * 6 4 2 8 8 O 1.21528 * 120.00596 * 359.71993 * 7 6 4 9 9 C 1.48010 * 119.99411 * 179.72398 * 7 6 4 10 10 N 1.34180 * 126.70195 * 359.68726 * 9 7 6 11 11 N 1.28988 * 107.25264 * 179.89762 * 10 9 7 12 12 N 1.28721 * 108.98715 * 0.36811 * 11 10 9 13 13 C 1.46493 * 125.31947 * 179.80041 * 12 11 10 14 14 C 1.52996 * 109.47487 * 239.95863 * 13 12 11 15 15 C 1.52999 * 109.47219 * 359.96077 * 13 12 11 16 16 C 1.53003 * 109.47109 * 119.96003 * 13 12 11 17 17 N 1.28866 * 109.35960 * 359.76532 * 12 11 10 18 18 C 1.53043 * 109.31150 * 185.57733 * 4 2 1 19 19 C 1.53033 * 109.53642 * 61.36589 * 18 4 2 20 20 C 1.53198 * 109.31384 * 298.63383 * 19 18 4 21 21 N 1.46922 * 108.77523 * 54.63874 * 20 19 18 22 22 C 1.36937 * 120.63487 * 126.41006 * 21 20 19 23 23 H 1.08001 * 120.00243 * 208.99623 * 22 21 20 24 24 C 1.38812 * 119.99770 * 28.99975 * 22 21 20 25 25 N 1.31618 * 120.00102 * 15.03386 * 24 22 21 26 26 Si 1.86800 * 119.99858 * 195.03546 * 24 22 21 27 27 H 1.48496 * 109.47124 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47055 * 120.00064 * 26 24 22 29 29 H 1.48501 * 109.47052 * 239.99882 * 26 24 22 30 30 H 1.09000 * 109.47129 * 180.35512 * 1 2 3 31 31 H 1.08997 * 109.47140 * 300.35612 * 1 2 3 32 32 H 1.08998 * 109.47116 * 60.35336 * 1 2 3 33 33 H 0.96999 * 119.99834 * 335.15935 * 6 4 2 34 34 H 1.09009 * 109.46967 * 60.00188 * 14 13 12 35 35 H 1.08995 * 109.47602 * 179.97438 * 14 13 12 36 36 H 1.08994 * 109.47337 * 300.00596 * 14 13 12 37 37 H 1.09002 * 109.47305 * 59.99885 * 15 13 12 38 38 H 1.09007 * 109.47420 * 179.97438 * 15 13 12 39 39 H 1.09001 * 109.47366 * 299.99948 * 15 13 12 40 40 H 1.08993 * 109.47132 * 59.99856 * 16 13 12 41 41 H 1.09007 * 109.47182 * 180.02562 * 16 13 12 42 42 H 1.09002 * 109.47004 * 299.99863 * 16 13 12 43 43 H 1.08995 * 109.45932 * 181.38960 * 18 4 2 44 44 H 1.09007 * 109.45786 * 301.36191 * 18 4 2 45 45 H 1.09001 * 109.49935 * 58.58874 * 19 18 4 46 46 H 1.09006 * 109.50014 * 178.65238 * 19 18 4 47 47 H 1.09001 * 109.58429 * 174.42472 * 20 19 18 48 48 H 1.09002 * 109.58809 * 294.84920 * 20 19 18 49 49 H 0.97003 * 120.00443 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 1 1.7659 -0.1674 -2.1371 6 7 1.4514 -2.0680 -1.3071 7 6 1.3365 -2.7000 -2.4919 8 8 1.7194 -2.1575 -3.5097 9 6 0.7438 -4.0548 -2.5534 10 7 0.2852 -4.7772 -1.5198 11 7 -0.1490 -5.8943 -1.9965 12 7 0.0255 -5.9015 -3.2718 13 6 -0.3372 -7.0004 -4.1701 14 6 0.9153 -7.5066 -4.8883 15 6 -0.9552 -8.1402 -3.3579 16 6 -1.3506 -6.5019 -5.2024 17 7 0.5684 -4.7906 -3.6349 18 6 3.5675 -0.8480 -1.1702 19 6 3.9569 -1.6657 0.0634 20 6 3.4651 -0.9469 1.3237 21 7 2.0226 -0.6995 1.1945 22 6 1.1538 -1.1127 2.1690 23 1 0.1359 -1.3669 1.9126 24 6 1.5813 -1.2046 3.4864 25 7 2.7045 -0.6265 3.8557 26 14 0.5624 -2.1491 4.7352 27 1 -0.6466 -2.7003 4.0723 28 1 1.3716 -3.2616 5.2945 29 1 0.1520 -1.2356 5.8317 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5193 0.8867 32 1 -0.3633 0.5083 -0.8931 33 1 1.1457 -2.5010 -0.4947 34 1 1.6373 -7.8618 -4.1528 35 1 0.6456 -8.3245 -5.5563 36 1 1.3556 -6.6946 -5.4668 37 1 -1.8476 -7.7796 -2.8463 38 1 -1.2255 -8.9577 -4.0264 39 1 -0.2333 -8.4953 -2.6225 40 1 -0.9103 -5.6899 -5.7810 41 1 -1.6208 -7.3197 -5.8705 42 1 -2.2429 -6.1413 -4.6908 43 1 3.9378 -1.3448 -2.0669 44 1 4.0061 0.1474 -1.0991 45 1 3.4983 -2.6528 0.0052 46 1 5.0412 -1.7701 0.1033 47 1 3.6519 -1.5717 2.1971 48 1 3.9904 0.0021 1.4316 49 1 3.0035 -0.6910 4.7763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993336562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:07 Heat of formation + Delta-G solvation = 111.231620 kcal Electronic energy + Delta-G solvation = -30681.685430 eV Core-core repulsion = 26682.754995 eV Total energy + Delta-G solvation = -3998.930434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.42592 -39.74320 -37.99433 -37.49830 -34.08217 -33.48448 -32.72211 -32.23143 -31.58235 -29.43393 -28.07591 -28.04490 -26.45880 -25.23295 -24.86072 -24.50713 -22.07753 -21.05385 -20.80827 -20.50206 -18.71912 -17.99018 -17.42735 -16.87979 -16.42683 -15.51040 -15.00437 -14.92904 -14.70634 -14.47124 -14.22401 -13.98122 -13.82250 -13.46600 -13.34194 -13.10216 -12.99800 -12.96116 -12.83904 -12.55707 -12.33362 -12.26165 -11.97017 -11.84175 -11.58089 -11.27158 -11.23337 -11.05104 -11.01846 -10.94414 -10.66478 -10.61818 -10.47403 -10.37401 -10.09911 -10.01523 -9.95600 -9.64413 -9.29045 -8.61987 -8.43994 -6.65455 -5.77062 -3.22213 1.02621 1.56374 1.58204 3.06360 3.32857 3.39574 3.48248 3.50338 3.78476 4.04038 4.13584 4.21948 4.50038 4.61297 4.93887 4.94790 4.96447 5.11567 5.15372 5.17605 5.28398 5.33963 5.36802 5.47448 5.55581 5.56501 5.59447 5.61775 5.74063 5.77440 5.96421 6.04034 6.12851 6.23139 6.30263 6.42065 6.53052 6.64741 6.69185 6.79033 6.93608 6.95523 7.06798 7.41926 7.70662 7.79820 7.84148 8.23115 8.40255 8.46073 9.22090 9.84690 10.40692 11.30861 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.003459 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.981014 B = 8092.226168 C = 9236.875301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.160 3.840 3 H 0.044 0.956 4 C 0.134 3.866 5 H 0.081 0.919 6 N -0.674 5.674 7 C 0.609 3.391 8 O -0.526 6.526 9 C 0.131 3.869 10 N -0.248 5.248 11 N -0.058 5.058 12 N -0.130 5.130 13 C 0.177 3.823 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.160 4.160 17 N -0.250 5.250 18 C -0.122 4.122 19 C -0.142 4.142 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.253 4.253 23 H 0.072 0.928 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.899 3.101 27 H -0.276 1.276 28 H -0.290 1.290 29 H -0.292 1.292 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.420 0.580 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.019 0.981 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -12.735 -17.052 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.053 3.947 3 H 0.061 0.939 4 C 0.028 3.972 5 H 0.099 0.901 6 N -0.325 5.325 7 C 0.388 3.612 8 O -0.399 6.399 9 C -0.153 4.153 10 N -0.122 5.122 11 N -0.051 5.051 12 N -0.045 5.045 13 C 0.097 3.903 14 C -0.219 4.219 15 C -0.211 4.211 16 C -0.218 4.218 17 N -0.104 5.104 18 C -0.161 4.161 19 C -0.182 4.182 20 C 0.045 3.955 21 N -0.310 5.310 22 C -0.382 4.382 23 H 0.090 0.910 24 C -0.193 4.193 25 N -0.545 5.545 26 Si 0.729 3.271 27 H -0.201 1.201 28 H -0.216 1.216 29 H -0.219 1.219 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.258 0.742 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.037 0.963 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.193 -12.849 -17.381 22.230 hybrid contribution -0.300 -0.329 0.985 1.081 sum -5.493 -13.179 -16.396 21.741 Atomic orbital electron populations 1.21812 0.95537 1.01687 1.00555 1.20722 0.93455 0.93943 0.86609 0.93852 1.21737 0.93174 0.81843 1.00462 0.90076 1.45804 1.59842 1.18417 1.08483 1.16177 0.79093 0.80950 0.84934 1.90795 1.49610 1.65161 1.34373 1.25512 1.04663 0.99643 0.85493 1.76258 1.12219 0.98397 1.25328 1.78913 1.16696 1.16205 0.93264 1.50726 1.35621 1.12133 1.05972 1.21461 0.97670 0.82578 0.88637 1.22254 0.95434 1.02942 1.01222 1.22106 1.02470 0.95923 1.00640 1.22255 0.98061 1.03435 0.98079 1.74957 1.14184 0.94837 1.26375 1.21795 0.95045 1.00779 0.98442 1.22168 0.99053 0.99637 0.97307 1.20825 0.83060 0.97210 0.94377 1.44186 1.03196 1.64812 1.18790 1.19219 0.94850 1.37894 0.86255 0.91016 1.25068 0.97708 0.99547 0.96973 1.70027 1.23274 1.44471 1.16776 0.86274 0.79832 0.79504 0.81503 1.20087 1.21642 1.21888 0.92639 0.91606 0.94120 0.74202 0.91263 0.89069 0.90235 0.90449 0.89200 0.90436 0.90235 0.89076 0.91274 0.92991 0.91491 0.92819 0.93335 0.89320 0.96324 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.72 37.16 0.29 -2.25 16 2 C 0.16 3.16 3.20 -67.59 -0.22 2.94 16 3 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 4 C 0.13 2.40 2.32 -67.81 -0.16 2.24 16 5 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 6 N -0.67 -12.19 3.47 -54.58 -0.19 -12.38 16 7 C 0.61 11.17 7.80 -12.26 -0.10 11.07 16 8 O -0.53 -10.57 16.76 5.34 0.09 -10.48 16 9 C 0.13 2.26 8.14 -156.24 -1.27 0.99 16 10 N -0.25 -4.27 12.26 32.10 0.39 -3.88 16 11 N -0.06 -0.86 12.21 60.35 0.74 -0.13 16 12 N -0.13 -1.67 3.72 0.52 0.00 -1.66 16 13 C 0.18 1.40 1.30 -131.82 -0.17 1.23 16 14 C -0.16 -1.03 8.66 37.16 0.32 -0.71 16 15 C -0.15 -0.92 7.90 37.16 0.29 -0.62 16 16 C -0.16 -1.01 8.66 37.16 0.32 -0.69 16 17 N -0.25 -3.87 11.85 32.11 0.38 -3.49 16 18 C -0.12 -2.17 5.57 -26.69 -0.15 -2.32 16 19 C -0.14 -2.75 5.93 -26.61 -0.16 -2.91 16 20 C 0.17 3.93 5.29 -3.71 -0.02 3.91 16 21 N -0.59 -13.62 2.65 -164.77 -0.44 -14.05 16 22 C -0.25 -6.46 8.61 -15.06 -0.13 -6.59 16 23 H 0.07 1.80 6.20 -52.49 -0.33 1.48 16 24 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 25 N -0.90 -25.38 11.14 55.49 0.62 -24.76 16 26 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.05 1.04 6.37 -51.93 -0.33 0.71 16 31 H 0.06 1.28 7.66 -51.93 -0.40 0.89 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.42 8.06 7.52 -40.82 -0.31 7.75 16 34 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 1.08 7.53 -51.93 -0.39 0.69 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -31.01 390.37 -6.72 -37.73 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.94 Total: 4.51 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.23 Total: 6.37 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 1.51 Total: -60.34 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.01 -6.72 -37.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993336562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.957 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds