Wall clock time and date at job start Tue Mar 31 2020 21:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.69966 * 2 1 4 4 C 1.53191 * 109.58369 * 239.64287 * 2 1 3 5 5 H 1.09004 * 109.52363 * 65.60972 * 4 2 1 6 6 N 1.46497 * 109.49995 * 305.52986 * 4 2 1 7 7 C 1.34774 * 119.99693 * 155.44057 * 6 4 2 8 8 O 1.21528 * 120.00596 * 359.71993 * 7 6 4 9 9 C 1.48010 * 119.99411 * 179.72398 * 7 6 4 10 10 N 1.34180 * 126.70195 * 359.68726 * 9 7 6 11 11 N 1.28988 * 107.25264 * 179.89762 * 10 9 7 12 12 N 1.28721 * 108.98715 * 0.36811 * 11 10 9 13 13 C 1.46493 * 125.31947 * 179.80041 * 12 11 10 14 14 C 1.52996 * 109.47487 * 239.95863 * 13 12 11 15 15 C 1.52999 * 109.47219 * 359.96077 * 13 12 11 16 16 C 1.53003 * 109.47109 * 119.96003 * 13 12 11 17 17 N 1.28866 * 109.35960 * 359.76532 * 12 11 10 18 18 C 1.53043 * 109.31150 * 185.57733 * 4 2 1 19 19 C 1.53033 * 109.53642 * 61.36589 * 18 4 2 20 20 C 1.53198 * 109.31384 * 298.63383 * 19 18 4 21 21 N 1.46922 * 108.77523 * 54.63874 * 20 19 18 22 22 C 1.36937 * 120.63487 * 126.41006 * 21 20 19 23 23 H 1.08001 * 120.00243 * 208.99623 * 22 21 20 24 24 C 1.38812 * 119.99770 * 28.99975 * 22 21 20 25 25 N 1.31618 * 120.00102 * 15.03386 * 24 22 21 26 26 Si 1.86800 * 119.99858 * 195.03546 * 24 22 21 27 27 H 1.48496 * 109.47124 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47055 * 120.00064 * 26 24 22 29 29 H 1.48501 * 109.47052 * 239.99882 * 26 24 22 30 30 H 1.09000 * 109.47129 * 180.35512 * 1 2 3 31 31 H 1.08997 * 109.47140 * 300.35612 * 1 2 3 32 32 H 1.08998 * 109.47116 * 60.35336 * 1 2 3 33 33 H 0.96999 * 119.99834 * 335.15935 * 6 4 2 34 34 H 1.09009 * 109.46967 * 60.00188 * 14 13 12 35 35 H 1.08995 * 109.47602 * 179.97438 * 14 13 12 36 36 H 1.08994 * 109.47337 * 300.00596 * 14 13 12 37 37 H 1.09002 * 109.47305 * 59.99885 * 15 13 12 38 38 H 1.09007 * 109.47420 * 179.97438 * 15 13 12 39 39 H 1.09001 * 109.47366 * 299.99948 * 15 13 12 40 40 H 1.08993 * 109.47132 * 59.99856 * 16 13 12 41 41 H 1.09007 * 109.47182 * 180.02562 * 16 13 12 42 42 H 1.09002 * 109.47004 * 299.99863 * 16 13 12 43 43 H 1.08995 * 109.45932 * 181.38960 * 18 4 2 44 44 H 1.09007 * 109.45786 * 301.36191 * 18 4 2 45 45 H 1.09001 * 109.49935 * 58.58874 * 19 18 4 46 46 H 1.09006 * 109.50014 * 178.65238 * 19 18 4 47 47 H 1.09001 * 109.58429 * 174.42472 * 20 19 18 48 48 H 1.09002 * 109.58809 * 294.84920 * 20 19 18 49 49 H 0.97003 * 120.00443 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 1 1.7659 -0.1674 -2.1371 6 7 1.4514 -2.0680 -1.3071 7 6 1.3365 -2.7000 -2.4919 8 8 1.7194 -2.1575 -3.5097 9 6 0.7438 -4.0548 -2.5534 10 7 0.2852 -4.7772 -1.5198 11 7 -0.1490 -5.8943 -1.9965 12 7 0.0255 -5.9015 -3.2718 13 6 -0.3372 -7.0004 -4.1701 14 6 0.9153 -7.5066 -4.8883 15 6 -0.9552 -8.1402 -3.3579 16 6 -1.3506 -6.5019 -5.2024 17 7 0.5684 -4.7906 -3.6349 18 6 3.5675 -0.8480 -1.1702 19 6 3.9569 -1.6657 0.0634 20 6 3.4651 -0.9469 1.3237 21 7 2.0226 -0.6995 1.1945 22 6 1.1538 -1.1127 2.1690 23 1 0.1359 -1.3669 1.9126 24 6 1.5813 -1.2046 3.4864 25 7 2.7045 -0.6265 3.8557 26 14 0.5624 -2.1491 4.7352 27 1 -0.6466 -2.7003 4.0723 28 1 1.3716 -3.2616 5.2945 29 1 0.1520 -1.2356 5.8317 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5193 0.8867 32 1 -0.3633 0.5083 -0.8931 33 1 1.1457 -2.5010 -0.4947 34 1 1.6373 -7.8618 -4.1528 35 1 0.6456 -8.3245 -5.5563 36 1 1.3556 -6.6946 -5.4668 37 1 -1.8476 -7.7796 -2.8463 38 1 -1.2255 -8.9577 -4.0264 39 1 -0.2333 -8.4953 -2.6225 40 1 -0.9103 -5.6899 -5.7810 41 1 -1.6208 -7.3197 -5.8705 42 1 -2.2429 -6.1413 -4.6908 43 1 3.9378 -1.3448 -2.0669 44 1 4.0061 0.1474 -1.0991 45 1 3.4983 -2.6528 0.0052 46 1 5.0412 -1.7701 0.1033 47 1 3.6519 -1.5717 2.1971 48 1 3.9904 0.0021 1.4316 49 1 3.0035 -0.6910 4.7763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993336562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:06 Heat of formation + Delta-G solvation = 91.675229 kcal Electronic energy + Delta-G solvation = -30682.533458 eV Core-core repulsion = 26682.754995 eV Total energy + Delta-G solvation = -3999.778463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.58308 -41.23355 -39.25151 -38.58387 -35.73823 -34.68269 -34.17193 -33.64772 -33.20212 -31.14575 -28.64814 -28.53608 -28.01349 -26.90392 -26.29585 -25.60918 -23.74405 -22.49871 -22.18042 -21.70130 -20.31845 -19.22417 -18.54581 -18.26561 -17.74658 -17.19622 -16.66334 -16.32598 -15.79947 -15.66273 -15.30134 -15.25325 -15.13089 -15.02003 -14.69831 -14.58334 -14.25303 -14.02453 -13.56014 -13.47964 -13.26873 -13.22301 -12.96485 -12.89852 -12.85326 -12.73322 -12.63860 -12.42832 -12.33624 -12.30571 -12.18130 -12.11277 -12.09276 -11.90043 -11.67084 -11.50464 -11.46115 -11.37357 -11.02621 -10.47899 -10.08594 -8.59194 -7.79379 -5.25001 -0.14892 0.28022 0.67343 1.48508 1.52779 1.61012 1.76645 1.93246 2.55639 2.85884 2.98981 3.37115 3.48659 3.57424 3.60835 3.64631 3.95212 4.04385 4.06169 4.21084 4.30630 4.40073 4.42098 4.52489 4.56542 4.59816 4.60231 4.67531 4.71905 4.72399 4.75441 4.95762 5.00042 5.01660 5.02751 5.10866 5.11490 5.18919 5.21166 5.21484 5.35319 5.43005 5.51780 5.61145 5.77465 5.83035 6.34298 6.47366 6.88723 7.07195 7.22797 7.92356 8.43958 9.27029 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.003459 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.981014 B = 8092.226168 C = 9236.875301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.158 3.842 3 H 0.045 0.955 4 C 0.140 3.860 5 H 0.095 0.905 6 N -0.671 5.671 7 C 0.615 3.385 8 O -0.545 6.545 9 C 0.113 3.887 10 N -0.273 5.273 11 N -0.061 5.061 12 N -0.109 5.109 13 C 0.158 3.842 14 C -0.157 4.157 15 C -0.150 4.150 16 C -0.156 4.156 17 N -0.254 5.254 18 C -0.116 4.116 19 C -0.129 4.129 20 C 0.179 3.821 21 N -0.598 5.598 22 C -0.243 4.243 23 H 0.076 0.924 24 C -0.047 4.047 25 N -0.934 5.934 26 Si 0.954 3.046 27 H -0.267 1.267 28 H -0.296 1.296 29 H -0.297 1.297 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.415 0.585 34 H 0.059 0.941 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.001 0.999 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -14.427 -19.454 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.051 3.949 3 H 0.063 0.937 4 C 0.035 3.965 5 H 0.113 0.887 6 N -0.322 5.322 7 C 0.395 3.605 8 O -0.420 6.420 9 C -0.170 4.170 10 N -0.147 5.147 11 N -0.054 5.054 12 N -0.026 5.026 13 C 0.079 3.921 14 C -0.215 4.215 15 C -0.208 4.208 16 C -0.214 4.214 17 N -0.108 5.108 18 C -0.154 4.154 19 C -0.168 4.168 20 C 0.053 3.947 21 N -0.322 5.322 22 C -0.374 4.374 23 H 0.094 0.906 24 C -0.242 4.242 25 N -0.580 5.580 26 Si 0.783 3.217 27 H -0.191 1.191 28 H -0.224 1.224 29 H -0.224 1.224 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.252 0.748 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.019 0.981 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.368 -14.551 -19.802 25.385 hybrid contribution 0.011 0.103 1.589 1.592 sum -6.357 -14.448 -18.213 24.102 Atomic orbital electron populations 1.21735 0.94404 1.01473 1.01233 1.20870 0.94428 0.93808 0.85760 0.93740 1.21639 0.93261 0.81834 0.99783 0.88722 1.45764 1.59773 1.18382 1.08283 1.16196 0.78563 0.81230 0.84462 1.90774 1.50588 1.65854 1.34830 1.25285 1.05970 0.99662 0.86131 1.76218 1.13185 0.99185 1.26079 1.78835 1.16792 1.15494 0.94237 1.51374 1.33286 1.12061 1.05905 1.22245 0.99096 0.81891 0.88832 1.22308 0.94359 1.03620 1.01214 1.22182 1.01536 0.96088 1.01033 1.22307 0.96881 1.04463 0.97795 1.74918 1.14371 0.95535 1.25971 1.21753 0.94901 1.01183 0.97599 1.21979 0.99871 0.98803 0.96168 1.20599 0.83208 0.96002 0.94898 1.44351 1.03027 1.65447 1.19340 1.19486 0.95140 1.36138 0.86601 0.90603 1.25681 0.98848 1.01041 0.98673 1.70163 1.24903 1.46417 1.16568 0.85399 0.78772 0.78007 0.79473 1.19089 1.22366 1.22425 0.93222 0.93091 0.91287 0.74808 0.92202 0.85065 0.91672 0.91310 0.85248 0.91426 0.91654 0.85095 0.92062 0.92258 0.90266 0.93720 0.91712 0.92699 0.98065 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.72 71.98 0.56 -4.10 16 2 C 0.16 6.09 3.20 44.98 0.14 6.24 16 3 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.14 4.85 2.32 45.07 0.10 4.96 16 5 H 0.09 3.09 7.58 -2.38 -0.02 3.08 16 6 N -0.67 -23.83 3.47 -444.89 -1.54 -25.37 16 7 C 0.62 22.16 7.80 86.84 0.68 22.83 16 8 O -0.55 -21.36 16.76 -3.80 -0.06 -21.42 16 9 C 0.11 3.88 8.14 137.15 1.12 4.99 16 10 N -0.27 -9.39 12.26 -52.36 -0.64 -10.03 16 11 N -0.06 -1.79 12.21 37.02 0.45 -1.34 16 12 N -0.11 -2.69 3.72 -152.27 -0.57 -3.25 16 13 C 0.16 2.13 1.30 3.60 0.00 2.14 16 14 C -0.16 -1.61 8.66 71.98 0.62 -0.99 16 15 C -0.15 -1.39 7.90 71.98 0.57 -0.82 16 16 C -0.16 -1.55 8.66 71.98 0.62 -0.93 16 17 N -0.25 -7.67 11.85 -52.31 -0.62 -8.29 16 18 C -0.12 -3.94 5.57 30.62 0.17 -3.77 16 19 C -0.13 -4.92 5.93 30.67 0.18 -4.74 16 20 C 0.18 8.35 5.29 86.37 0.46 8.81 16 21 N -0.60 -27.92 2.65 -675.20 -1.79 -29.71 16 22 C -0.24 -12.54 8.61 84.03 0.72 -11.81 16 23 H 0.08 3.80 6.20 -2.91 -0.02 3.78 16 24 C -0.05 -2.56 4.96 84.86 0.42 -2.14 16 25 N -0.93 -54.10 11.14 21.65 0.24 -53.86 16 26 Si 0.95 44.71 29.58 68.60 2.03 46.73 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 30 H 0.05 1.81 6.37 -2.39 -0.02 1.80 16 31 H 0.05 1.95 7.66 -2.39 -0.02 1.93 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.41 15.86 7.52 -92.71 -0.70 15.16 16 34 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.13 0.29 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.13 0.18 8.14 -2.38 -0.02 0.16 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.13 0.26 8.14 -2.38 -0.02 0.24 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 45 H 0.04 1.78 7.53 -2.39 -0.02 1.76 16 46 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 47 H 0.05 2.95 6.06 -2.39 -0.01 2.94 16 48 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -68.48 390.37 4.13 -64.35 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.26 Total: 21.53 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.37 Total: 20.66 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -4.47 Total: -131.86 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.48 4.13 -64.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993336562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.021 kcal (2) G-P(sol) polarization free energy of solvation -68.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds