Wall clock time and date at job start Tue Mar 31 2020 21:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.58330 * 2 1 4 4 C 1.53198 * 109.58519 * 239.72046 * 2 1 3 5 5 H 1.08994 * 109.49590 * 305.38428 * 4 2 1 6 6 N 1.46504 * 109.49491 * 65.48307 * 4 2 1 7 7 C 1.34775 * 119.99600 * 204.83508 * 6 4 2 8 8 O 1.21536 * 120.00287 * 0.02562 * 7 6 4 9 9 C 1.47999 * 119.99936 * 179.97438 * 7 6 4 10 10 N 1.34191 * 126.69785 * 0.02977 * 9 7 6 11 11 N 1.28988 * 107.25278 * 179.97438 * 10 9 7 12 12 N 1.28728 * 108.98580 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.31631 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47222 * 359.96860 * 13 12 11 15 15 C 1.53001 * 109.47154 * 119.97237 * 13 12 11 16 16 C 1.53006 * 109.46842 * 239.97234 * 13 12 11 17 17 N 1.28863 * 109.35901 * 359.72249 * 12 11 10 18 18 C 1.53036 * 109.31072 * 185.43502 * 4 2 1 19 19 C 1.53037 * 109.52881 * 61.37065 * 18 4 2 20 20 C 1.53195 * 109.31482 * 298.61596 * 19 18 4 21 21 N 1.46922 * 108.76344 * 54.65437 * 20 19 18 22 22 C 1.36935 * 120.63068 * 126.40955 * 21 20 19 23 23 H 1.08007 * 119.99995 * 208.62778 * 22 21 20 24 24 C 1.38809 * 120.00043 * 28.62709 * 22 21 20 25 25 N 1.31618 * 120.00290 * 14.72263 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 194.71749 * 24 22 21 27 27 H 1.48502 * 109.46833 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47183 * 119.99971 * 26 24 22 29 29 H 1.48500 * 109.47259 * 240.00056 * 26 24 22 30 30 H 1.09001 * 109.46644 * 180.27811 * 1 2 3 31 31 H 1.08992 * 109.46834 * 300.27614 * 1 2 3 32 32 H 1.08997 * 109.47144 * 60.28271 * 1 2 3 33 33 H 0.96997 * 120.00343 * 24.83706 * 6 4 2 34 34 H 1.09001 * 109.46636 * 60.00595 * 14 13 12 35 35 H 1.09004 * 109.46958 * 179.97438 * 14 13 12 36 36 H 1.08991 * 109.47268 * 300.00399 * 14 13 12 37 37 H 1.08999 * 109.47073 * 59.99929 * 15 13 12 38 38 H 1.08997 * 109.47001 * 179.97438 * 15 13 12 39 39 H 1.08996 * 109.46875 * 299.99677 * 15 13 12 40 40 H 1.09004 * 109.47217 * 60.00127 * 16 13 12 41 41 H 1.08997 * 109.46990 * 179.97438 * 16 13 12 42 42 H 1.08999 * 109.47231 * 299.99976 * 16 13 12 43 43 H 1.08999 * 109.45734 * 181.38742 * 18 4 2 44 44 H 1.09009 * 109.45700 * 301.35793 * 18 4 2 45 45 H 1.09000 * 109.49834 * 58.57896 * 19 18 4 46 46 H 1.08997 * 109.49748 * 178.67757 * 19 18 4 47 47 H 1.09005 * 109.59696 * 294.86535 * 20 19 18 48 48 H 1.08992 * 109.70447 * 174.50559 * 20 19 18 49 49 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.6050 -1.7245 -1.2923 6 7 1.6676 0.0282 -2.4437 7 6 1.5473 -0.6025 -3.6287 8 8 1.7504 -1.7984 -3.7040 9 6 1.1669 0.1611 -4.8381 10 7 0.9125 1.4767 -4.9088 11 7 0.6196 1.7444 -6.1361 12 7 0.6799 0.6599 -6.8271 13 6 0.4127 0.5551 -8.2637 14 6 0.0499 1.9347 -8.8170 15 6 1.6604 0.0313 -8.9776 16 6 -0.7514 -0.4101 -8.4968 17 7 1.0170 -0.3181 -6.0586 18 6 3.5678 -0.8433 -1.1730 19 6 3.9601 -1.6610 0.0597 20 6 3.4686 -0.9437 1.3210 21 7 2.0255 -0.6992 1.1935 22 6 1.1587 -1.1145 2.1689 23 1 0.1393 -1.3651 1.9145 24 6 1.5900 -1.2136 3.4845 25 7 2.7190 -0.6452 3.8515 26 14 0.5683 -2.1536 4.7342 27 1 -0.6468 -2.6946 4.0737 28 1 1.3707 -3.2740 5.2875 29 1 0.1689 -1.2400 5.8347 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3633 0.5181 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.5052 0.9826 -2.3836 34 1 0.8792 2.6223 -8.6509 35 1 -0.1484 1.8567 -9.8860 36 1 -0.8389 2.3078 -8.3084 37 1 1.9189 -0.9515 -8.5834 38 1 1.4615 -0.0471 -10.0464 39 1 2.4896 0.7189 -8.8115 40 1 -1.6403 -0.0369 -7.9882 41 1 -0.9504 -0.4878 -9.5657 42 1 -0.4929 -1.3929 -8.1027 43 1 3.9380 -1.3389 -2.0705 44 1 4.0045 0.1530 -1.1020 45 1 3.5033 -2.6489 0.0014 46 1 5.0446 -1.7628 0.0987 47 1 3.9921 0.0064 1.4288 48 1 3.6579 -1.5664 2.1952 49 1 3.0203 -0.7141 4.7709 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993336566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:11 Heat of formation + Delta-G solvation = 109.423807 kcal Electronic energy + Delta-G solvation = -29868.692497 eV Core-core repulsion = 25869.683670 eV Total energy + Delta-G solvation = -3999.008827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.59444 -39.76241 -38.08352 -37.56759 -34.47125 -33.65914 -32.85285 -32.38536 -31.60994 -29.30311 -28.18053 -28.13406 -26.50022 -25.32198 -24.83532 -24.63435 -22.17137 -21.10643 -20.68594 -20.43532 -19.50242 -17.95791 -17.58201 -16.96794 -16.45043 -15.77583 -15.06526 -14.96744 -14.79913 -14.49685 -14.33873 -14.10527 -13.73666 -13.63626 -13.48424 -13.33977 -13.08051 -12.94871 -12.79964 -12.54712 -12.42812 -12.42103 -12.08360 -11.73056 -11.69481 -11.52869 -11.23077 -11.18337 -11.10597 -10.91397 -10.74560 -10.57199 -10.52180 -10.32975 -10.25817 -10.06440 -10.00428 -9.69307 -9.38815 -8.75215 -8.44649 -6.67056 -5.77555 -3.21910 0.87386 1.37599 1.43263 2.86595 3.16709 3.38630 3.46834 3.48716 3.65461 3.93626 3.97898 4.05385 4.42162 4.52580 4.83765 4.85497 4.86695 5.02271 5.05830 5.07631 5.12815 5.30086 5.34468 5.40310 5.46033 5.50875 5.52032 5.58954 5.64331 5.79115 5.89041 5.97773 6.07622 6.22778 6.33544 6.44007 6.53259 6.57425 6.69846 6.77077 6.84920 6.99569 7.07336 7.42673 7.55139 7.71308 7.83569 8.03192 8.20967 8.46094 9.21778 9.84183 10.39879 11.30954 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.002357 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.152715 B =11878.042037 C =12194.726137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.168 3.832 3 H 0.031 0.969 4 C 0.131 3.869 5 H 0.091 0.909 6 N -0.692 5.692 7 C 0.612 3.388 8 O -0.511 6.511 9 C 0.131 3.869 10 N -0.256 5.256 11 N -0.058 5.058 12 N -0.127 5.127 13 C 0.177 3.823 14 C -0.153 4.153 15 C -0.161 4.161 16 C -0.161 4.161 17 N -0.247 5.247 18 C -0.119 4.119 19 C -0.139 4.139 20 C 0.167 3.833 21 N -0.582 5.582 22 C -0.249 4.249 23 H 0.072 0.928 24 C 0.003 3.997 25 N -0.903 5.903 26 Si 0.902 3.098 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.291 1.291 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.407 0.593 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.092 0.908 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 4.373 -26.573 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.060 3.940 3 H 0.049 0.951 4 C 0.026 3.974 5 H 0.109 0.891 6 N -0.343 5.343 7 C 0.391 3.609 8 O -0.383 6.383 9 C -0.153 4.153 10 N -0.131 5.131 11 N -0.050 5.050 12 N -0.042 5.042 13 C 0.096 3.904 14 C -0.211 4.211 15 C -0.219 4.219 16 C -0.219 4.219 17 N -0.100 5.100 18 C -0.157 4.157 19 C -0.179 4.179 20 C 0.042 3.958 21 N -0.305 5.305 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.196 4.196 25 N -0.547 5.547 26 Si 0.732 3.268 27 H -0.202 1.202 28 H -0.216 1.216 29 H -0.218 1.218 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.242 0.758 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.038 0.962 48 H 0.110 0.890 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.474 3.981 -26.774 27.291 hybrid contribution -0.340 -0.313 0.907 1.018 sum -3.814 3.668 -25.867 26.403 Atomic orbital electron populations 1.21840 0.95551 1.01779 1.00458 1.20558 0.93339 0.93722 0.86391 0.95110 1.21982 0.95487 0.96903 0.83008 0.89115 1.45906 1.68150 1.13082 1.07163 1.16142 0.78430 0.85659 0.80655 1.90847 1.49714 1.13304 1.84451 1.25519 1.05643 0.89961 0.94199 1.76153 1.15068 1.12699 1.09141 1.78872 1.15887 1.12251 0.98019 1.50741 1.39775 1.02067 1.11616 1.21508 0.98593 0.99998 0.70293 1.22108 1.04040 0.92885 1.02072 1.22261 0.95212 1.03135 1.01283 1.22265 0.96075 0.99481 1.04087 1.74992 1.16267 1.17131 1.01630 1.21793 0.94967 1.00398 0.98585 1.22186 0.99321 0.99697 0.96720 1.20894 0.82949 0.97381 0.94603 1.44056 1.03199 1.65096 1.18126 1.19229 0.94729 1.37711 0.86217 0.91038 1.25067 0.97790 0.99797 0.96936 1.70021 1.22896 1.44908 1.16922 0.86224 0.79680 0.79468 0.81414 1.20239 1.21596 1.21770 0.92601 0.91624 0.94131 0.75791 0.90480 0.89099 0.90453 0.90171 0.88968 0.91270 0.91243 0.88966 0.90167 0.93048 0.92452 0.92423 0.92880 0.96244 0.88990 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.84 37.16 0.29 -2.32 16 2 C 0.17 3.39 3.03 -67.59 -0.20 3.19 16 3 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.13 2.41 1.99 -67.81 -0.14 2.27 16 5 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 6 N -0.69 -10.99 4.57 -54.58 -0.25 -11.24 16 7 C 0.61 10.34 7.80 -12.26 -0.10 10.24 16 8 O -0.51 -10.14 16.76 5.33 0.09 -10.05 16 9 C 0.13 2.00 8.14 -156.24 -1.27 0.73 16 10 N -0.26 -3.67 12.26 32.10 0.39 -3.27 16 11 N -0.06 -0.72 12.21 60.35 0.74 0.01 16 12 N -0.13 -1.41 3.72 0.53 0.00 -1.41 16 13 C 0.18 1.16 1.30 -131.82 -0.17 0.98 16 14 C -0.15 -0.68 7.90 37.16 0.29 -0.39 16 15 C -0.16 -0.84 8.66 37.16 0.32 -0.52 16 16 C -0.16 -0.85 8.66 37.16 0.32 -0.53 16 17 N -0.25 -3.46 11.85 32.11 0.38 -3.08 16 18 C -0.12 -2.15 5.46 -26.69 -0.15 -2.30 16 19 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 20 C 0.17 3.94 5.29 -3.71 -0.02 3.92 16 21 N -0.58 -14.11 2.99 -164.77 -0.49 -14.60 16 22 C -0.25 -6.60 8.63 -15.06 -0.13 -6.73 16 23 H 0.07 1.86 6.20 -52.48 -0.33 1.53 16 24 C 0.00 0.07 4.97 -17.43 -0.09 -0.02 16 25 N -0.90 -25.73 11.09 55.49 0.62 -25.12 16 26 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.05 1.09 7.41 -51.93 -0.39 0.71 16 31 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 32 H 0.04 0.65 7.78 -51.93 -0.40 0.24 16 33 H 0.41 5.76 8.35 -40.82 -0.34 5.42 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.09 2.43 6.01 -51.93 -0.31 2.11 16 49 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -32.02 393.53 -6.85 -38.87 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.03 Total: 1.82 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.19 Total: 5.63 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 1.39 Total: -58.71 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.02 -6.85 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993336566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.298 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds