Wall clock time and date at job start Tue Mar 31 2020 21:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.58330 * 2 1 4 4 C 1.53198 * 109.58519 * 239.72046 * 2 1 3 5 5 H 1.08994 * 109.49590 * 305.38428 * 4 2 1 6 6 N 1.46504 * 109.49491 * 65.48307 * 4 2 1 7 7 C 1.34775 * 119.99600 * 204.83508 * 6 4 2 8 8 O 1.21536 * 120.00287 * 0.02562 * 7 6 4 9 9 C 1.47999 * 119.99936 * 179.97438 * 7 6 4 10 10 N 1.34191 * 126.69785 * 0.02977 * 9 7 6 11 11 N 1.28988 * 107.25278 * 179.97438 * 10 9 7 12 12 N 1.28728 * 108.98580 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.31631 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47222 * 359.96860 * 13 12 11 15 15 C 1.53001 * 109.47154 * 119.97237 * 13 12 11 16 16 C 1.53006 * 109.46842 * 239.97234 * 13 12 11 17 17 N 1.28863 * 109.35901 * 359.72249 * 12 11 10 18 18 C 1.53036 * 109.31072 * 185.43502 * 4 2 1 19 19 C 1.53037 * 109.52881 * 61.37065 * 18 4 2 20 20 C 1.53195 * 109.31482 * 298.61596 * 19 18 4 21 21 N 1.46922 * 108.76344 * 54.65437 * 20 19 18 22 22 C 1.36935 * 120.63068 * 126.40955 * 21 20 19 23 23 H 1.08007 * 119.99995 * 208.62778 * 22 21 20 24 24 C 1.38809 * 120.00043 * 28.62709 * 22 21 20 25 25 N 1.31618 * 120.00290 * 14.72263 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 194.71749 * 24 22 21 27 27 H 1.48502 * 109.46833 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47183 * 119.99971 * 26 24 22 29 29 H 1.48500 * 109.47259 * 240.00056 * 26 24 22 30 30 H 1.09001 * 109.46644 * 180.27811 * 1 2 3 31 31 H 1.08992 * 109.46834 * 300.27614 * 1 2 3 32 32 H 1.08997 * 109.47144 * 60.28271 * 1 2 3 33 33 H 0.96997 * 120.00343 * 24.83706 * 6 4 2 34 34 H 1.09001 * 109.46636 * 60.00595 * 14 13 12 35 35 H 1.09004 * 109.46958 * 179.97438 * 14 13 12 36 36 H 1.08991 * 109.47268 * 300.00399 * 14 13 12 37 37 H 1.08999 * 109.47073 * 59.99929 * 15 13 12 38 38 H 1.08997 * 109.47001 * 179.97438 * 15 13 12 39 39 H 1.08996 * 109.46875 * 299.99677 * 15 13 12 40 40 H 1.09004 * 109.47217 * 60.00127 * 16 13 12 41 41 H 1.08997 * 109.46990 * 179.97438 * 16 13 12 42 42 H 1.08999 * 109.47231 * 299.99976 * 16 13 12 43 43 H 1.08999 * 109.45734 * 181.38742 * 18 4 2 44 44 H 1.09009 * 109.45700 * 301.35793 * 18 4 2 45 45 H 1.09000 * 109.49834 * 58.57896 * 19 18 4 46 46 H 1.08997 * 109.49748 * 178.67757 * 19 18 4 47 47 H 1.09005 * 109.59696 * 294.86535 * 20 19 18 48 48 H 1.08992 * 109.70447 * 174.50559 * 20 19 18 49 49 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.6050 -1.7245 -1.2923 6 7 1.6676 0.0282 -2.4437 7 6 1.5473 -0.6025 -3.6287 8 8 1.7504 -1.7984 -3.7040 9 6 1.1669 0.1611 -4.8381 10 7 0.9125 1.4767 -4.9088 11 7 0.6196 1.7444 -6.1361 12 7 0.6799 0.6599 -6.8271 13 6 0.4127 0.5551 -8.2637 14 6 0.0499 1.9347 -8.8170 15 6 1.6604 0.0313 -8.9776 16 6 -0.7514 -0.4101 -8.4968 17 7 1.0170 -0.3181 -6.0586 18 6 3.5678 -0.8433 -1.1730 19 6 3.9601 -1.6610 0.0597 20 6 3.4686 -0.9437 1.3210 21 7 2.0255 -0.6992 1.1935 22 6 1.1587 -1.1145 2.1689 23 1 0.1393 -1.3651 1.9145 24 6 1.5900 -1.2136 3.4845 25 7 2.7190 -0.6452 3.8515 26 14 0.5683 -2.1536 4.7342 27 1 -0.6468 -2.6946 4.0737 28 1 1.3707 -3.2740 5.2875 29 1 0.1689 -1.2400 5.8347 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3633 0.5181 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.5052 0.9826 -2.3836 34 1 0.8792 2.6223 -8.6509 35 1 -0.1484 1.8567 -9.8860 36 1 -0.8389 2.3078 -8.3084 37 1 1.9189 -0.9515 -8.5834 38 1 1.4615 -0.0471 -10.0464 39 1 2.4896 0.7189 -8.8115 40 1 -1.6403 -0.0369 -7.9882 41 1 -0.9504 -0.4878 -9.5657 42 1 -0.4929 -1.3929 -8.1027 43 1 3.9380 -1.3389 -2.0705 44 1 4.0045 0.1530 -1.1020 45 1 3.5033 -2.6489 0.0014 46 1 5.0446 -1.7628 0.0987 47 1 3.9921 0.0064 1.4288 48 1 3.6579 -1.5664 2.1952 49 1 3.0203 -0.7141 4.7709 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993336566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:10 Heat of formation + Delta-G solvation = 88.142132 kcal Electronic energy + Delta-G solvation = -29869.615340 eV Core-core repulsion = 25869.683670 eV Total energy + Delta-G solvation = -3999.931670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.60271 -41.19040 -39.31130 -38.59220 -36.06817 -34.70382 -34.35191 -33.67059 -33.27806 -31.01979 -28.64817 -28.53361 -28.04084 -26.98499 -26.24782 -25.61072 -23.77429 -22.34686 -22.13812 -21.57258 -21.14256 -19.16471 -18.55448 -18.25982 -17.74024 -17.42173 -16.78371 -16.21364 -15.88538 -15.57187 -15.38170 -15.26095 -15.19696 -15.08729 -14.90265 -14.53425 -14.29070 -14.04459 -13.48102 -13.34890 -13.28302 -13.26914 -13.22171 -12.84313 -12.82793 -12.72568 -12.63644 -12.51213 -12.37638 -12.35614 -12.11564 -12.10852 -11.98883 -11.87657 -11.79122 -11.70394 -11.47492 -11.44615 -11.13887 -10.51536 -10.18675 -8.65043 -7.83313 -5.29253 -0.16711 0.25112 0.63751 1.47482 1.50313 1.59301 1.65626 1.87775 2.52910 2.78402 2.94642 3.32239 3.48960 3.55631 3.62903 3.67219 3.85408 3.97217 4.02506 4.20684 4.29873 4.37094 4.41917 4.49445 4.53027 4.59935 4.60890 4.61996 4.73462 4.73619 4.75106 4.88966 4.91876 5.02765 5.03683 5.11520 5.12697 5.15319 5.18170 5.22929 5.25524 5.39673 5.45784 5.59945 5.73014 5.80361 6.23402 6.43795 6.84476 7.03870 7.18604 7.87949 8.39116 9.23711 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.002357 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.152715 B =11878.042037 C =12194.726137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.165 3.835 3 H 0.036 0.964 4 C 0.147 3.853 5 H 0.070 0.930 6 N -0.681 5.681 7 C 0.618 3.382 8 O -0.544 6.544 9 C 0.116 3.884 10 N -0.266 5.266 11 N -0.057 5.057 12 N -0.109 5.109 13 C 0.159 3.841 14 C -0.150 4.150 15 C -0.158 4.158 16 C -0.158 4.158 17 N -0.257 5.257 18 C -0.112 4.112 19 C -0.128 4.128 20 C 0.173 3.827 21 N -0.599 5.599 22 C -0.250 4.250 23 H 0.074 0.926 24 C -0.050 4.050 25 N -0.934 5.934 26 Si 0.961 3.039 27 H -0.268 1.268 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.130 0.870 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.004 0.996 48 H 0.060 0.940 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 4.943 -29.628 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 H 0.053 0.947 4 C 0.041 3.959 5 H 0.088 0.912 6 N -0.332 5.332 7 C 0.399 3.601 8 O -0.419 6.419 9 C -0.168 4.168 10 N -0.140 5.140 11 N -0.049 5.049 12 N -0.026 5.026 13 C 0.080 3.920 14 C -0.208 4.208 15 C -0.216 4.216 16 C -0.216 4.216 17 N -0.111 5.111 18 C -0.151 4.151 19 C -0.168 4.168 20 C 0.047 3.953 21 N -0.323 5.323 22 C -0.380 4.380 23 H 0.092 0.908 24 C -0.245 4.245 25 N -0.580 5.580 26 Si 0.790 3.210 27 H -0.193 1.193 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.148 0.852 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.022 0.978 48 H 0.078 0.922 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.389 4.587 -29.865 30.532 hybrid contribution -0.099 -0.445 1.661 1.722 sum -4.488 4.142 -28.204 28.858 Atomic orbital electron populations 1.21756 0.94443 1.01298 1.01302 1.20689 0.94299 0.93606 0.85581 0.94669 1.21554 0.95525 0.95754 0.83050 0.91163 1.45660 1.67836 1.13369 1.06323 1.16214 0.77564 0.85246 0.81093 1.90828 1.51204 1.14762 1.85056 1.25098 1.07324 0.90316 0.94051 1.76119 1.15561 1.12213 1.10121 1.78807 1.15838 1.12631 0.97619 1.51337 1.37506 1.00972 1.12766 1.22234 0.99836 1.01920 0.67962 1.22182 1.03361 0.91114 1.04099 1.22311 0.94260 1.01757 1.03258 1.22315 0.94984 0.97925 1.06398 1.74956 1.16473 1.18150 1.01553 1.21726 0.94690 1.00737 0.97916 1.22016 1.00503 0.98801 0.95433 1.20703 0.82948 0.96336 0.95271 1.44281 1.03255 1.65824 1.18907 1.19500 0.95057 1.36663 0.86771 0.90839 1.25748 0.99006 1.01108 0.98676 1.70161 1.24454 1.46541 1.16873 0.85290 0.78536 0.77971 0.79168 1.19262 1.21994 1.22023 0.93666 0.92928 0.91113 0.74506 0.91111 0.85422 0.91144 0.91888 0.85211 0.91909 0.91960 0.85198 0.91902 0.92259 0.91378 0.93330 0.90697 0.97772 0.92201 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 7.84 71.98 0.56 -4.25 16 2 C 0.17 6.61 3.03 44.98 0.14 6.75 16 3 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.15 5.30 1.99 45.07 0.09 5.39 16 5 H 0.07 2.88 7.58 -2.39 -0.02 2.87 16 6 N -0.68 -20.93 4.57 -444.89 -2.03 -22.96 16 7 C 0.62 20.52 7.80 86.83 0.68 21.20 16 8 O -0.54 -21.52 16.76 -3.83 -0.06 -21.58 16 9 C 0.12 3.45 8.14 137.15 1.12 4.56 16 10 N -0.27 -7.33 12.26 -52.36 -0.64 -7.98 16 11 N -0.06 -1.35 12.21 37.02 0.45 -0.90 16 12 N -0.11 -2.27 3.72 -152.25 -0.57 -2.84 16 13 C 0.16 1.70 1.30 3.61 0.00 1.71 16 14 C -0.15 -0.88 7.90 71.98 0.57 -0.31 16 15 C -0.16 -1.25 8.66 71.98 0.62 -0.63 16 16 C -0.16 -1.29 8.66 71.98 0.62 -0.66 16 17 N -0.26 -7.00 11.85 -52.31 -0.62 -7.62 16 18 C -0.11 -3.94 5.46 30.62 0.17 -3.78 16 19 C -0.13 -4.99 6.08 30.67 0.19 -4.80 16 20 C 0.17 8.30 5.29 86.36 0.46 8.75 16 21 N -0.60 -29.39 2.99 -675.21 -2.02 -31.42 16 22 C -0.25 -13.38 8.63 84.03 0.73 -12.66 16 23 H 0.07 3.84 6.20 -2.91 -0.02 3.82 16 24 C -0.05 -2.78 4.97 84.86 0.42 -2.36 16 25 N -0.93 -54.60 11.09 21.65 0.24 -54.36 16 26 Si 0.96 45.00 29.58 68.60 2.03 47.03 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 29 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 30 H 0.04 1.75 7.41 -2.39 -0.02 1.73 16 31 H 0.05 2.06 7.66 -2.39 -0.02 2.04 16 32 H 0.07 2.15 7.78 -2.39 -0.02 2.13 16 33 H 0.42 11.20 8.35 -92.71 -0.77 10.43 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.13 -0.17 8.14 -2.38 -0.02 -0.19 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 48 H 0.06 3.26 6.01 -2.39 -0.01 3.25 16 49 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -70.87 393.53 3.32 -67.55 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.18 Total: 16.15 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.36 Total: 18.92 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -5.19 Total: -128.07 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.06 Total: -21.58 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.87 3.32 -67.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993336566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.694 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds