Wall clock time and date at job start Tue Mar 31 2020 21:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58311 * 2 1 4 4 C 1.53188 * 109.58871 * 120.28713 * 2 1 3 5 5 H 1.09006 * 109.49706 * 294.41009 * 4 2 1 6 6 N 1.46499 * 109.49772 * 54.46909 * 4 2 1 7 7 C 1.34773 * 120.00006 * 204.93963 * 6 4 2 8 8 O 1.21537 * 120.00384 * 359.97438 * 7 6 4 9 9 C 1.48011 * 120.00190 * 180.02562 * 7 6 4 10 10 N 1.34189 * 126.69354 * 0.03568 * 9 7 6 11 11 N 1.28986 * 107.24871 * 179.70871 * 10 9 7 12 12 N 1.28724 * 108.98934 * 0.42428 * 11 10 9 13 13 C 1.46494 * 125.32244 * 179.82765 * 12 11 10 14 14 C 1.53003 * 109.47187 * 239.69747 * 13 12 11 15 15 C 1.53001 * 109.47373 * 119.69497 * 13 12 11 16 16 C 1.52999 * 109.47178 * 359.69393 * 13 12 11 17 17 N 1.28871 * 109.35441 * 359.56736 * 12 11 10 18 18 C 1.53038 * 109.34223 * 174.44133 * 4 2 1 19 19 C 1.53107 * 109.49935 * 298.65041 * 18 4 2 20 20 C 1.53194 * 109.33188 * 61.34484 * 19 18 4 21 21 N 1.46928 * 109.58426 * 239.57693 * 2 1 3 22 22 C 1.36931 * 120.63387 * 6.57857 * 21 2 1 23 23 H 1.07996 * 120.00038 * 330.17381 * 22 21 2 24 24 C 1.38812 * 119.99844 * 150.16868 * 22 21 2 25 25 N 1.31614 * 120.00396 * 344.50295 * 24 22 21 26 26 Si 1.86804 * 119.99914 * 164.50621 * 24 22 21 27 27 H 1.48500 * 109.47469 * 59.99646 * 26 24 22 28 28 H 1.48503 * 109.47350 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47033 * 299.99813 * 26 24 22 30 30 H 1.08996 * 109.47274 * 299.71405 * 1 2 3 31 31 H 1.09001 * 109.47346 * 59.71705 * 1 2 3 32 32 H 1.09001 * 109.47254 * 179.71569 * 1 2 3 33 33 H 0.96999 * 119.99824 * 24.94018 * 6 4 2 34 34 H 1.09000 * 109.46913 * 300.00121 * 14 13 12 35 35 H 1.09000 * 109.46814 * 179.97438 * 14 13 12 36 36 H 1.09007 * 109.47144 * 59.99722 * 14 13 12 37 37 H 1.08997 * 109.46905 * 179.97438 * 15 13 12 38 38 H 1.08996 * 109.46639 * 300.00431 * 15 13 12 39 39 H 1.08998 * 109.46385 * 60.00151 * 15 13 12 40 40 H 1.08999 * 109.47686 * 300.00578 * 16 13 12 41 41 H 1.09008 * 109.47068 * 59.99908 * 16 13 12 42 42 H 1.09000 * 109.47629 * 179.97438 * 16 13 12 43 43 H 1.08997 * 109.45935 * 58.63183 * 18 4 2 44 44 H 1.08999 * 109.46377 * 178.59815 * 18 4 2 45 45 H 1.08996 * 109.48985 * 301.38365 * 19 18 4 46 46 H 1.09003 * 109.51490 * 181.31247 * 19 18 4 47 47 H 1.08998 * 109.58456 * 185.57927 * 20 19 18 48 48 H 1.08993 * 109.58873 * 65.14907 * 20 19 18 49 49 H 0.97004 * 120.00631 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 1 1.7655 -0.1645 2.1371 6 7 1.4514 -2.0663 1.3096 7 6 1.3296 -2.6939 2.4961 8 8 1.7113 -2.1496 3.5135 9 6 0.7318 -4.0464 2.5600 10 7 0.2700 -4.7686 1.5276 11 7 -0.1604 -5.8867 2.0053 12 7 0.0041 -5.8879 3.2819 13 6 -0.3654 -6.9827 4.1826 14 6 -1.3804 -6.4775 5.2099 15 6 0.8830 -7.4910 4.9064 16 6 -0.9847 -8.1230 3.3720 17 7 0.5496 -4.7777 3.6433 18 6 3.5675 -0.8465 1.1720 19 6 3.9569 -1.6657 -0.0615 20 6 3.4650 -0.9485 -1.3226 21 7 2.0225 -0.7010 -1.1937 22 6 1.1536 -1.1161 -2.1672 23 1 0.1398 -1.3832 -1.9080 24 6 1.5759 -1.1936 -3.4872 25 7 2.6863 -0.5930 -3.8593 26 14 0.5681 -2.1503 -4.7356 27 1 -0.7926 -1.5628 -4.8282 28 1 1.2292 -2.0807 -6.0635 29 1 0.4667 -3.5687 -4.3075 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 1.1470 -2.5009 0.4976 34 1 -0.9392 -5.6651 5.7874 35 1 -1.6556 -7.2922 5.8797 36 1 -2.2699 -6.1153 4.6942 37 1 0.6080 -8.3052 5.5768 38 1 1.6061 -7.8509 4.1745 39 1 1.3241 -6.6786 5.4839 40 1 -1.8741 -7.7609 2.8562 41 1 -0.2616 -8.4829 2.6400 42 1 -1.2592 -8.9377 4.0420 43 1 4.0061 0.1488 1.0999 44 1 3.9374 -1.3420 2.0696 45 1 3.4983 -2.6527 -0.0021 46 1 5.0411 -1.7701 -0.1019 47 1 3.6518 -1.5744 -2.1952 48 1 3.9902 0.0003 -1.4317 49 1 2.9817 -0.6475 -4.7817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993336570.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:15 Heat of formation + Delta-G solvation = 110.959482 kcal Electronic energy + Delta-G solvation = -30677.303771 eV Core-core repulsion = 26678.361536 eV Total energy + Delta-G solvation = -3998.942235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.42513 -39.73987 -37.99279 -37.49424 -34.07669 -33.48290 -32.72089 -32.23019 -31.57651 -29.44239 -28.07572 -28.04437 -26.45677 -25.22906 -24.85334 -24.50649 -22.07886 -21.05454 -20.80874 -20.50007 -18.71910 -17.98938 -17.42647 -16.87932 -16.42131 -15.50435 -14.99994 -14.92362 -14.70578 -14.46998 -14.22412 -13.98436 -13.83726 -13.46082 -13.34384 -13.10154 -12.99494 -12.96117 -12.83918 -12.54905 -12.33326 -12.26085 -11.96986 -11.84083 -11.58034 -11.26696 -11.22619 -11.05033 -11.01811 -10.92687 -10.66800 -10.60419 -10.50031 -10.37361 -10.11281 -10.01567 -9.97331 -9.64587 -9.29351 -8.61775 -8.43132 -6.64242 -5.77180 -3.22643 1.02675 1.56491 1.58164 3.06429 3.32861 3.41321 3.46829 3.49471 3.78506 4.04078 4.13617 4.22011 4.50360 4.61347 4.93916 4.94864 4.96487 5.11589 5.15385 5.17637 5.28522 5.34056 5.36810 5.47479 5.55681 5.56597 5.59466 5.61890 5.73851 5.77482 5.96517 6.04095 6.13063 6.23633 6.30299 6.42411 6.52806 6.64802 6.69051 6.78940 6.93490 6.96164 7.07262 7.40951 7.68855 7.79860 7.83999 8.23167 8.40337 8.46512 9.22146 9.84723 10.41449 11.30934 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.003455 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.312481 B = 8102.910143 C = 9248.658245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.160 3.840 3 H 0.044 0.956 4 C 0.134 3.866 5 H 0.081 0.919 6 N -0.673 5.673 7 C 0.609 3.391 8 O -0.526 6.526 9 C 0.131 3.869 10 N -0.248 5.248 11 N -0.058 5.058 12 N -0.130 5.130 13 C 0.177 3.823 14 C -0.160 4.160 15 C -0.160 4.160 16 C -0.153 4.153 17 N -0.250 5.250 18 C -0.122 4.122 19 C -0.142 4.142 20 C 0.172 3.828 21 N -0.585 5.585 22 C -0.256 4.256 23 H 0.071 0.929 24 C 0.008 3.992 25 N -0.901 5.901 26 Si 0.899 3.101 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.420 0.580 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.086 0.914 48 H 0.019 0.981 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 -12.749 17.022 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.053 3.947 3 H 0.061 0.939 4 C 0.028 3.972 5 H 0.099 0.901 6 N -0.325 5.325 7 C 0.388 3.612 8 O -0.399 6.399 9 C -0.153 4.153 10 N -0.122 5.122 11 N -0.051 5.051 12 N -0.045 5.045 13 C 0.097 3.903 14 C -0.218 4.218 15 C -0.219 4.219 16 C -0.211 4.211 17 N -0.103 5.103 18 C -0.160 4.160 19 C -0.182 4.182 20 C 0.046 3.954 21 N -0.309 5.309 22 C -0.385 4.385 23 H 0.088 0.912 24 C -0.191 4.191 25 N -0.545 5.545 26 Si 0.729 3.271 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.258 0.742 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.037 0.963 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.158 -12.853 17.339 22.191 hybrid contribution -0.321 -0.341 -0.976 1.083 sum -5.479 -13.193 16.363 21.722 Atomic orbital electron populations 1.21810 0.95550 1.01666 1.00553 1.20716 0.93460 0.93931 0.86607 0.93870 1.21738 0.93176 0.81838 1.00473 0.90079 1.45803 1.59826 1.18523 1.08386 1.16179 0.79100 0.80951 0.84931 1.90797 1.49736 1.64955 1.34460 1.25509 1.04572 0.99715 0.85509 1.76263 1.12252 0.98299 1.25391 1.78912 1.16825 1.16144 0.93190 1.50730 1.35667 1.12179 1.05886 1.21463 0.97595 0.82710 0.88579 1.22254 0.98039 1.03397 0.98131 1.22256 0.95499 1.02937 1.01168 1.22106 1.02460 0.95918 1.00656 1.74951 1.13979 0.95034 1.26385 1.21801 0.95042 1.00772 0.98422 1.22178 0.99051 0.99636 0.97299 1.20795 0.83149 0.97160 0.94256 1.44153 1.03135 1.64690 1.18923 1.19109 0.95246 1.38022 0.86129 0.91187 1.25077 0.97774 0.99278 0.96984 1.70013 1.24081 1.43567 1.16793 0.86431 0.79616 0.80460 0.80629 1.20913 1.21796 1.20815 0.94141 0.91593 0.92665 0.74203 0.90234 0.89073 0.91273 0.89072 0.91259 0.90241 0.90449 0.90438 0.89200 0.91486 0.92979 0.92805 0.93333 0.89587 0.96274 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.72 37.16 0.29 -2.26 16 2 C 0.16 3.17 3.20 -67.60 -0.22 2.95 16 3 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 4 C 0.13 2.40 2.32 -67.81 -0.16 2.24 16 5 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 6 N -0.67 -12.20 3.46 -54.58 -0.19 -12.38 16 7 C 0.61 11.17 7.80 -12.26 -0.10 11.07 16 8 O -0.53 -10.57 16.76 5.33 0.09 -10.48 16 9 C 0.13 2.27 8.14 -156.25 -1.27 0.99 16 10 N -0.25 -4.27 12.26 32.10 0.39 -3.88 16 11 N -0.06 -0.86 12.21 60.35 0.74 -0.13 16 12 N -0.13 -1.67 3.72 0.52 0.00 -1.67 16 13 C 0.18 1.40 1.30 -131.82 -0.17 1.23 16 14 C -0.16 -1.01 8.66 37.16 0.32 -0.69 16 15 C -0.16 -1.03 8.66 37.16 0.32 -0.71 16 16 C -0.15 -0.92 7.90 37.16 0.29 -0.62 16 17 N -0.25 -3.87 11.85 32.11 0.38 -3.49 16 18 C -0.12 -2.16 5.58 -26.66 -0.15 -2.31 16 19 C -0.14 -2.74 5.93 -26.58 -0.16 -2.90 16 20 C 0.17 3.95 5.28 -3.71 -0.02 3.93 16 21 N -0.59 -13.61 2.64 -164.78 -0.44 -14.05 16 22 C -0.26 -6.54 8.58 -15.06 -0.13 -6.67 16 23 H 0.07 1.75 6.23 -52.49 -0.33 1.43 16 24 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 25 N -0.90 -25.38 11.23 55.49 0.62 -24.76 16 26 Si 0.90 21.35 29.58 -169.99 -5.03 16.32 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.30 7.67 -51.93 -0.40 0.90 16 32 H 0.05 1.03 6.37 -51.93 -0.33 0.70 16 33 H 0.42 8.07 7.52 -40.82 -0.31 7.76 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.05 1.08 7.53 -51.93 -0.39 0.69 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 2.23 6.15 -51.93 -0.32 1.91 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -30.99 390.54 -6.71 -37.71 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.94 Total: 4.53 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.23 Total: 6.39 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 1.51 Total: -60.35 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.99 -6.71 -37.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993336570.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.666 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds