Wall clock time and date at job start Tue Mar 31 2020 21:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58311 * 2 1 4 4 C 1.53188 * 109.58871 * 120.28713 * 2 1 3 5 5 H 1.09006 * 109.49706 * 294.41009 * 4 2 1 6 6 N 1.46499 * 109.49772 * 54.46909 * 4 2 1 7 7 C 1.34773 * 120.00006 * 204.93963 * 6 4 2 8 8 O 1.21537 * 120.00384 * 359.97438 * 7 6 4 9 9 C 1.48011 * 120.00190 * 180.02562 * 7 6 4 10 10 N 1.34189 * 126.69354 * 0.03568 * 9 7 6 11 11 N 1.28986 * 107.24871 * 179.70871 * 10 9 7 12 12 N 1.28724 * 108.98934 * 0.42428 * 11 10 9 13 13 C 1.46494 * 125.32244 * 179.82765 * 12 11 10 14 14 C 1.53003 * 109.47187 * 239.69747 * 13 12 11 15 15 C 1.53001 * 109.47373 * 119.69497 * 13 12 11 16 16 C 1.52999 * 109.47178 * 359.69393 * 13 12 11 17 17 N 1.28871 * 109.35441 * 359.56736 * 12 11 10 18 18 C 1.53038 * 109.34223 * 174.44133 * 4 2 1 19 19 C 1.53107 * 109.49935 * 298.65041 * 18 4 2 20 20 C 1.53194 * 109.33188 * 61.34484 * 19 18 4 21 21 N 1.46928 * 109.58426 * 239.57693 * 2 1 3 22 22 C 1.36931 * 120.63387 * 6.57857 * 21 2 1 23 23 H 1.07996 * 120.00038 * 330.17381 * 22 21 2 24 24 C 1.38812 * 119.99844 * 150.16868 * 22 21 2 25 25 N 1.31614 * 120.00396 * 344.50295 * 24 22 21 26 26 Si 1.86804 * 119.99914 * 164.50621 * 24 22 21 27 27 H 1.48500 * 109.47469 * 59.99646 * 26 24 22 28 28 H 1.48503 * 109.47350 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47033 * 299.99813 * 26 24 22 30 30 H 1.08996 * 109.47274 * 299.71405 * 1 2 3 31 31 H 1.09001 * 109.47346 * 59.71705 * 1 2 3 32 32 H 1.09001 * 109.47254 * 179.71569 * 1 2 3 33 33 H 0.96999 * 119.99824 * 24.94018 * 6 4 2 34 34 H 1.09000 * 109.46913 * 300.00121 * 14 13 12 35 35 H 1.09000 * 109.46814 * 179.97438 * 14 13 12 36 36 H 1.09007 * 109.47144 * 59.99722 * 14 13 12 37 37 H 1.08997 * 109.46905 * 179.97438 * 15 13 12 38 38 H 1.08996 * 109.46639 * 300.00431 * 15 13 12 39 39 H 1.08998 * 109.46385 * 60.00151 * 15 13 12 40 40 H 1.08999 * 109.47686 * 300.00578 * 16 13 12 41 41 H 1.09008 * 109.47068 * 59.99908 * 16 13 12 42 42 H 1.09000 * 109.47629 * 179.97438 * 16 13 12 43 43 H 1.08997 * 109.45935 * 58.63183 * 18 4 2 44 44 H 1.08999 * 109.46377 * 178.59815 * 18 4 2 45 45 H 1.08996 * 109.48985 * 301.38365 * 19 18 4 46 46 H 1.09003 * 109.51490 * 181.31247 * 19 18 4 47 47 H 1.08998 * 109.58456 * 185.57927 * 20 19 18 48 48 H 1.08993 * 109.58873 * 65.14907 * 20 19 18 49 49 H 0.97004 * 120.00631 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 1 1.7655 -0.1645 2.1371 6 7 1.4514 -2.0663 1.3096 7 6 1.3296 -2.6939 2.4961 8 8 1.7113 -2.1496 3.5135 9 6 0.7318 -4.0464 2.5600 10 7 0.2700 -4.7686 1.5276 11 7 -0.1604 -5.8867 2.0053 12 7 0.0041 -5.8879 3.2819 13 6 -0.3654 -6.9827 4.1826 14 6 -1.3804 -6.4775 5.2099 15 6 0.8830 -7.4910 4.9064 16 6 -0.9847 -8.1230 3.3720 17 7 0.5496 -4.7777 3.6433 18 6 3.5675 -0.8465 1.1720 19 6 3.9569 -1.6657 -0.0615 20 6 3.4650 -0.9485 -1.3226 21 7 2.0225 -0.7010 -1.1937 22 6 1.1536 -1.1161 -2.1672 23 1 0.1398 -1.3832 -1.9080 24 6 1.5759 -1.1936 -3.4872 25 7 2.6863 -0.5930 -3.8593 26 14 0.5681 -2.1503 -4.7356 27 1 -0.7926 -1.5628 -4.8282 28 1 1.2292 -2.0807 -6.0635 29 1 0.4667 -3.5687 -4.3075 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 1.1470 -2.5009 0.4976 34 1 -0.9392 -5.6651 5.7874 35 1 -1.6556 -7.2922 5.8797 36 1 -2.2699 -6.1153 4.6942 37 1 0.6080 -8.3052 5.5768 38 1 1.6061 -7.8509 4.1745 39 1 1.3241 -6.6786 5.4839 40 1 -1.8741 -7.7609 2.8562 41 1 -0.2616 -8.4829 2.6400 42 1 -1.2592 -8.9377 4.0420 43 1 4.0061 0.1488 1.0999 44 1 3.9374 -1.3420 2.0696 45 1 3.4983 -2.6527 -0.0021 46 1 5.0411 -1.7701 -0.1019 47 1 3.6518 -1.5744 -2.1952 48 1 3.9902 0.0003 -1.4317 49 1 2.9817 -0.6475 -4.7817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993336570.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:14 Heat of formation + Delta-G solvation = 91.415316 kcal Electronic energy + Delta-G solvation = -30678.151269 eV Core-core repulsion = 26678.361536 eV Total energy + Delta-G solvation = -3999.789734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.58371 -41.23120 -39.24777 -38.58372 -35.73255 -34.68338 -34.17284 -33.64453 -33.20155 -31.15447 -28.64875 -28.53619 -28.01361 -26.89452 -26.29590 -25.61006 -23.74628 -22.50029 -22.17984 -21.70224 -20.31877 -19.22468 -18.54592 -18.26074 -17.74709 -17.18693 -16.66252 -16.32428 -15.79936 -15.68010 -15.29896 -15.25629 -15.13155 -15.01651 -14.69914 -14.58285 -14.24623 -14.02542 -13.55857 -13.47970 -13.26926 -13.22370 -12.96598 -12.87347 -12.85338 -12.69413 -12.63899 -12.45265 -12.35245 -12.32324 -12.17963 -12.11318 -12.09404 -11.93688 -11.67163 -11.50657 -11.46097 -11.37375 -11.02793 -10.46389 -10.08733 -8.58065 -7.79638 -5.25617 -0.14965 0.27906 0.67256 1.50468 1.53526 1.58460 1.76614 1.93096 2.55930 2.85815 2.98883 3.36854 3.48621 3.57374 3.60944 3.64571 3.95194 4.04408 4.06189 4.20829 4.30547 4.40080 4.42115 4.52412 4.56478 4.59756 4.60213 4.67766 4.71865 4.72330 4.75276 4.95684 4.99793 5.01604 5.02664 5.10825 5.11476 5.18874 5.21117 5.21427 5.35343 5.43011 5.51783 5.60019 5.77186 5.81822 6.34225 6.47402 6.88624 7.07104 7.22823 7.92271 8.44581 9.26706 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.003455 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.312481 B = 8102.910143 C = 9248.658245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.158 3.842 3 H 0.045 0.955 4 C 0.140 3.860 5 H 0.095 0.905 6 N -0.671 5.671 7 C 0.615 3.385 8 O -0.545 6.545 9 C 0.113 3.887 10 N -0.273 5.273 11 N -0.061 5.061 12 N -0.109 5.109 13 C 0.158 3.842 14 C -0.156 4.156 15 C -0.157 4.157 16 C -0.150 4.150 17 N -0.254 5.254 18 C -0.116 4.116 19 C -0.129 4.129 20 C 0.180 3.820 21 N -0.597 5.597 22 C -0.247 4.247 23 H 0.075 0.925 24 C -0.045 4.045 25 N -0.933 5.933 26 Si 0.954 3.046 27 H -0.277 1.277 28 H -0.299 1.299 29 H -0.282 1.282 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.414 0.586 34 H 0.064 0.936 35 H 0.131 0.869 36 H 0.060 0.940 37 H 0.131 0.869 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.002 0.998 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 -14.439 19.396 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.051 3.949 3 H 0.062 0.938 4 C 0.035 3.965 5 H 0.113 0.887 6 N -0.322 5.322 7 C 0.395 3.605 8 O -0.421 6.421 9 C -0.170 4.170 10 N -0.147 5.147 11 N -0.054 5.054 12 N -0.026 5.026 13 C 0.079 3.921 14 C -0.214 4.214 15 C -0.215 4.215 16 C -0.208 4.208 17 N -0.108 5.108 18 C -0.154 4.154 19 C -0.168 4.168 20 C 0.054 3.946 21 N -0.321 5.321 22 C -0.378 4.378 23 H 0.093 0.907 24 C -0.240 4.240 25 N -0.579 5.579 26 Si 0.783 3.217 27 H -0.203 1.203 28 H -0.226 1.226 29 H -0.208 1.208 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.252 0.748 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.148 0.852 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.020 0.980 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.323 -14.551 19.731 25.319 hybrid contribution -0.016 0.089 -1.569 1.572 sum -6.339 -14.463 18.161 24.066 Atomic orbital electron populations 1.21731 0.94441 1.01463 1.01185 1.20861 0.94416 0.93792 0.85788 0.93785 1.21638 0.93286 0.81827 0.99769 0.88737 1.45763 1.59760 1.18485 1.08188 1.16198 0.78573 0.81226 0.84459 1.90777 1.50712 1.65649 1.34914 1.25282 1.05871 0.99739 0.86146 1.76223 1.13221 0.99089 1.26150 1.78834 1.16928 1.15430 0.94167 1.51378 1.33330 1.12097 1.05825 1.22247 0.99014 0.82040 0.88765 1.22306 0.96861 1.04410 0.97857 1.22310 0.94435 1.03599 1.01164 1.22182 1.01529 0.96071 1.01057 1.74913 1.14166 0.95732 1.25973 1.21760 0.94872 1.01181 0.97600 1.21989 0.99890 0.98797 0.96141 1.20574 0.83274 0.95957 0.94794 1.44320 1.02981 1.65334 1.19463 1.19390 0.95551 1.36318 0.86505 0.90748 1.25695 0.98918 1.00742 0.98682 1.70153 1.25743 1.45522 1.16515 0.85548 0.78509 0.79245 0.78385 1.20266 1.22600 1.20784 0.91315 0.93150 0.93215 0.74813 0.91652 0.85089 0.92061 0.85066 0.92198 0.91675 0.91312 0.91433 0.85244 0.90259 0.92227 0.93711 0.91672 0.92948 0.98012 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.72 71.98 0.56 -4.11 16 2 C 0.16 6.12 3.20 44.97 0.14 6.26 16 3 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.14 4.86 2.32 45.07 0.10 4.97 16 5 H 0.09 3.10 7.58 -2.38 -0.02 3.08 16 6 N -0.67 -23.86 3.46 -444.89 -1.54 -25.40 16 7 C 0.62 22.18 7.80 86.84 0.68 22.85 16 8 O -0.55 -21.38 16.76 -3.83 -0.06 -21.44 16 9 C 0.11 3.88 8.14 137.15 1.12 5.00 16 10 N -0.27 -9.41 12.26 -52.36 -0.64 -10.06 16 11 N -0.06 -1.80 12.21 37.02 0.45 -1.35 16 12 N -0.11 -2.69 3.72 -152.26 -0.57 -3.26 16 13 C 0.16 2.14 1.30 3.61 0.00 2.14 16 14 C -0.16 -1.55 8.66 71.98 0.62 -0.93 16 15 C -0.16 -1.61 8.66 71.98 0.62 -0.99 16 16 C -0.15 -1.39 7.90 71.98 0.57 -0.83 16 17 N -0.25 -7.67 11.85 -52.31 -0.62 -8.29 16 18 C -0.12 -3.93 5.58 30.64 0.17 -3.76 16 19 C -0.13 -4.91 5.93 30.70 0.18 -4.73 16 20 C 0.18 8.40 5.28 86.36 0.46 8.85 16 21 N -0.60 -27.94 2.64 -675.24 -1.78 -29.72 16 22 C -0.25 -12.77 8.58 84.03 0.72 -12.05 16 23 H 0.07 3.73 6.23 -2.91 -0.02 3.71 16 24 C -0.04 -2.44 4.94 84.86 0.42 -2.02 16 25 N -0.93 -54.10 11.23 21.65 0.24 -53.85 16 26 Si 0.95 44.65 29.58 68.60 2.03 46.68 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.94 7.67 -2.39 -0.02 1.92 16 32 H 0.05 1.82 6.37 -2.39 -0.02 1.80 16 33 H 0.41 15.88 7.52 -92.71 -0.70 15.19 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.04 1.78 7.53 -2.39 -0.02 1.77 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 2.81 6.15 -2.39 -0.01 2.79 16 48 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -68.45 390.54 4.13 -64.32 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.26 Total: 21.72 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.37 Total: 20.66 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -4.46 Total: -131.93 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -68.45 4.13 -64.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993336570.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.736 kcal (2) G-P(sol) polarization free energy of solvation -68.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds