Wall clock time and date at job start Tue Mar 31 2020 21:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.58301 * 2 1 4 4 C 1.53193 * 109.58587 * 120.43023 * 2 1 3 5 5 H 1.08996 * 109.49752 * 54.47198 * 4 2 1 6 6 N 1.46494 * 109.49855 * 294.40385 * 4 2 1 7 7 C 1.34777 * 120.00349 * 154.99894 * 6 4 2 8 8 O 1.21538 * 119.99346 * 0.02562 * 7 6 4 9 9 C 1.47999 * 120.00264 * 179.97438 * 7 6 4 10 10 N 1.34189 * 126.70074 * 0.03064 * 9 7 6 11 11 N 1.28976 * 107.25134 * 179.97438 * 10 9 7 12 12 N 1.28718 * 108.99451 * 359.97438 * 11 10 9 13 13 C 1.46497 * 125.32593 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47073 * 359.97438 * 13 12 11 15 15 C 1.53000 * 109.47225 * 119.97607 * 13 12 11 16 16 C 1.52995 * 109.47656 * 239.97928 * 13 12 11 17 17 N 1.28873 * 109.35355 * 359.73118 * 12 11 10 18 18 C 1.53044 * 109.31142 * 174.42054 * 4 2 1 19 19 C 1.53043 * 109.53900 * 298.63512 * 18 4 2 20 20 C 1.52762 * 109.38024 * 61.24120 * 19 18 4 21 21 N 1.46923 * 109.00850 * 305.58475 * 20 19 18 22 22 C 1.36936 * 120.63133 * 233.58986 * 21 20 19 23 23 H 1.08002 * 120.00023 * 150.98059 * 22 21 20 24 24 C 1.38812 * 119.99954 * 330.97980 * 22 21 20 25 25 N 1.31617 * 120.00004 * 343.83473 * 24 22 21 26 26 Si 1.86802 * 119.99969 * 163.83966 * 24 22 21 27 27 H 1.48501 * 109.47353 * 84.97960 * 26 24 22 28 28 H 1.48495 * 109.47319 * 324.97580 * 26 24 22 29 29 H 1.48501 * 109.47125 * 204.97810 * 26 24 22 30 30 H 1.09002 * 109.46963 * 180.28259 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.28088 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.28497 * 1 2 3 33 33 H 0.96998 * 120.00016 * 335.00693 * 6 4 2 34 34 H 1.09000 * 109.47221 * 59.99163 * 14 13 12 35 35 H 1.08995 * 109.47351 * 179.97438 * 14 13 12 36 36 H 1.09001 * 109.46935 * 300.00321 * 14 13 12 37 37 H 1.09001 * 109.47053 * 59.99864 * 15 13 12 38 38 H 1.08995 * 109.47537 * 180.02562 * 15 13 12 39 39 H 1.09011 * 109.47148 * 300.00474 * 15 13 12 40 40 H 1.09002 * 109.47314 * 59.99743 * 16 13 12 41 41 H 1.09000 * 109.47367 * 179.97438 * 16 13 12 42 42 H 1.08996 * 109.46992 * 300.00110 * 16 13 12 43 43 H 1.09003 * 109.45591 * 58.65791 * 18 4 2 44 44 H 1.08992 * 109.46157 * 178.61155 * 18 4 2 45 45 H 1.08995 * 109.49542 * 181.31386 * 19 18 4 46 46 H 1.08995 * 109.49583 * 301.41030 * 19 18 4 47 47 H 1.09006 * 109.50749 * 185.70770 * 20 19 18 48 48 H 1.08994 * 109.43486 * 65.42636 * 20 19 18 49 49 H 0.97001 * 120.00094 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 1 1.6030 -1.7270 1.2891 6 7 1.6699 0.0231 2.4435 7 6 1.5465 -0.6102 3.6268 8 8 1.7457 -1.8070 3.6990 9 6 1.1696 0.1517 4.8383 10 7 0.9204 1.4682 4.9125 11 7 0.6281 1.7336 6.1403 12 7 0.6837 0.6472 6.8284 13 6 0.4165 0.5397 8.2648 14 6 0.0614 1.9196 8.8222 15 6 -0.7525 -0.4200 8.4957 16 6 1.6617 0.0073 8.9768 17 7 1.0061 -0.3321 6.0552 18 6 3.5675 -0.8495 1.1690 19 6 3.9569 -1.6657 -0.0657 20 6 3.4645 -0.9502 -1.3223 21 7 2.0226 -0.6980 -1.1954 22 6 1.1537 -1.1107 -2.1700 23 1 0.1348 -1.3616 -1.9141 24 6 1.5824 -1.2067 -3.4867 25 7 2.6962 -0.6138 -3.8611 26 14 0.5783 -2.1772 -4.7275 27 1 -0.4893 -1.3100 -5.2873 28 1 -0.0377 -3.3502 -4.0568 29 1 1.4638 -2.6431 -5.8248 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.5112 0.9783 2.3859 34 1 -0.8256 2.2991 8.3150 35 1 -0.1378 1.8396 9.8908 36 1 0.8942 2.6032 8.6576 37 1 -0.4994 -1.4031 8.0986 38 1 -0.9516 -0.4997 9.5644 39 1 -1.6397 -0.0407 7.9885 40 1 2.4945 0.6909 8.8123 41 1 1.4630 -0.0723 10.0456 42 1 1.9148 -0.9758 8.5798 43 1 4.0061 0.1459 1.0995 44 1 3.9379 -1.3475 2.0650 45 1 5.0412 -1.7695 -0.1060 46 1 3.4984 -2.6528 -0.0087 47 1 3.6504 -1.5769 -2.1946 48 1 3.9929 -0.0031 -1.4310 49 1 2.9955 -0.6805 -4.7813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993336572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:20 Heat of formation + Delta-G solvation = 109.351421 kcal Electronic energy + Delta-G solvation = -29868.413168 eV Core-core repulsion = 25869.401203 eV Total energy + Delta-G solvation = -3999.011966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.59611 -39.76378 -38.08549 -37.57498 -34.46997 -33.65871 -32.85555 -32.40386 -31.60818 -29.31309 -28.18022 -28.13380 -26.50586 -25.32292 -24.83252 -24.63494 -22.17971 -21.10754 -20.68141 -20.43668 -19.50112 -17.95637 -17.58279 -16.96737 -16.44893 -15.77142 -15.06265 -14.96277 -14.79715 -14.49983 -14.33747 -14.10671 -13.75427 -13.63879 -13.48545 -13.34111 -13.08078 -12.94849 -12.80105 -12.55940 -12.42746 -12.42096 -12.08330 -11.73548 -11.69755 -11.52481 -11.23041 -11.18373 -11.09679 -10.91747 -10.72196 -10.58982 -10.52520 -10.33182 -10.26279 -10.06382 -10.03289 -9.68866 -9.39077 -8.75356 -8.43859 -6.66512 -5.77960 -3.21331 0.87390 1.37646 1.43262 2.86548 3.16666 3.39185 3.46272 3.48859 3.65469 3.93657 3.97918 4.05433 4.42244 4.52922 4.83811 4.85517 4.86712 5.02269 5.05882 5.07608 5.12797 5.29851 5.34407 5.40334 5.46084 5.50889 5.51692 5.58928 5.64337 5.78520 5.89068 5.97564 6.07387 6.22680 6.33623 6.44231 6.53156 6.57065 6.69768 6.76700 6.84695 7.00134 7.07611 7.41631 7.55067 7.68490 7.83638 8.03231 8.20941 8.45912 9.21607 9.84433 10.40482 11.30990 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.002356 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.831423 B =11879.327909 C =12187.511032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.168 3.832 3 H 0.032 0.968 4 C 0.131 3.869 5 H 0.091 0.909 6 N -0.692 5.692 7 C 0.612 3.388 8 O -0.511 6.511 9 C 0.131 3.869 10 N -0.256 5.256 11 N -0.057 5.057 12 N -0.127 5.127 13 C 0.177 3.823 14 C -0.153 4.153 15 C -0.161 4.161 16 C -0.160 4.160 17 N -0.247 5.247 18 C -0.119 4.119 19 C -0.139 4.139 20 C 0.168 3.832 21 N -0.581 5.581 22 C -0.252 4.252 23 H 0.071 0.929 24 C 0.004 3.996 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.280 1.280 29 H -0.290 1.290 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.407 0.593 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.088 0.912 48 H 0.020 0.980 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 4.276 26.584 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.060 3.940 3 H 0.049 0.951 4 C 0.026 3.974 5 H 0.109 0.891 6 N -0.343 5.343 7 C 0.391 3.609 8 O -0.383 6.383 9 C -0.153 4.153 10 N -0.131 5.131 11 N -0.050 5.050 12 N -0.042 5.042 13 C 0.096 3.904 14 C -0.211 4.211 15 C -0.219 4.219 16 C -0.219 4.219 17 N -0.100 5.100 18 C -0.157 4.157 19 C -0.179 4.179 20 C 0.043 3.957 21 N -0.304 5.304 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.213 1.213 28 H -0.205 1.205 29 H -0.216 1.216 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.242 0.758 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.107 0.893 48 H 0.038 0.962 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.350 3.883 26.775 27.262 hybrid contribution -0.350 -0.333 -0.904 1.024 sum -3.700 3.550 25.871 26.375 Atomic orbital electron populations 1.21846 0.95560 1.01719 1.00509 1.20559 0.93363 0.93727 0.86352 0.95077 1.21981 0.95502 0.96937 0.82958 0.89108 1.45902 1.68210 1.12983 1.07199 1.16143 0.78424 0.85671 0.80648 1.90848 1.49748 1.13258 1.84466 1.25515 1.05626 0.89860 0.94316 1.76149 1.15029 1.12811 1.09067 1.78863 1.15826 1.12259 0.98072 1.50742 1.40018 1.01903 1.11542 1.21505 0.98594 0.99992 0.70297 1.22108 1.04074 0.92881 1.02045 1.22265 0.96006 0.99548 1.04094 1.22261 0.95248 1.03081 1.01298 1.74995 1.16397 1.17080 1.01549 1.21792 0.94982 1.00402 0.98565 1.22113 0.99359 0.99737 0.96707 1.20762 0.83097 0.97308 0.94535 1.44027 1.03216 1.65158 1.18020 1.19143 0.94732 1.38083 0.86177 0.91164 1.25056 0.97875 0.99631 0.96892 1.70030 1.23874 1.43820 1.16831 0.86341 0.79353 0.80193 0.81038 1.21341 1.20531 1.21609 0.92637 0.94158 0.91570 0.75789 0.90462 0.89099 0.90473 0.90160 0.88969 0.91247 0.91271 0.88963 0.90175 0.92435 0.93033 0.92829 0.92424 0.89336 0.96220 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.82 37.16 0.29 -2.32 16 2 C 0.17 3.40 3.04 -67.60 -0.21 3.19 16 3 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.13 2.41 1.99 -67.81 -0.14 2.27 16 5 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 6 N -0.69 -10.99 4.58 -54.59 -0.25 -11.24 16 7 C 0.61 10.34 7.80 -12.26 -0.10 10.24 16 8 O -0.51 -10.14 16.76 5.33 0.09 -10.05 16 9 C 0.13 2.00 8.14 -156.25 -1.27 0.73 16 10 N -0.26 -3.67 12.26 32.10 0.39 -3.27 16 11 N -0.06 -0.72 12.21 60.35 0.74 0.02 16 12 N -0.13 -1.41 3.72 0.52 0.00 -1.41 16 13 C 0.18 1.16 1.30 -131.82 -0.17 0.98 16 14 C -0.15 -0.68 7.90 37.16 0.29 -0.39 16 15 C -0.16 -0.85 8.66 37.16 0.32 -0.53 16 16 C -0.16 -0.84 8.66 37.16 0.32 -0.52 16 17 N -0.25 -3.46 11.85 32.11 0.38 -3.08 16 18 C -0.12 -2.15 5.46 -26.69 -0.15 -2.29 16 19 C -0.14 -2.73 6.07 -26.83 -0.16 -2.89 16 20 C 0.17 3.96 5.26 -3.93 -0.02 3.94 16 21 N -0.58 -14.10 3.00 -165.04 -0.49 -14.60 16 22 C -0.25 -6.68 8.60 -15.06 -0.13 -6.81 16 23 H 0.07 1.82 6.21 -52.49 -0.33 1.50 16 24 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 25 N -0.90 -25.72 11.21 55.49 0.62 -25.09 16 26 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.05 1.09 7.45 -51.93 -0.39 0.70 16 31 H 0.04 0.64 7.80 -51.93 -0.41 0.24 16 32 H 0.07 1.32 7.62 -51.93 -0.40 0.93 16 33 H 0.41 5.76 8.35 -40.82 -0.34 5.42 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.09 2.33 6.10 -51.93 -0.32 2.01 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -32.05 393.66 -6.85 -38.90 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.04 Total: 1.77 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.20 Total: 5.63 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 1.39 Total: -58.68 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.05 -6.85 -38.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993336572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.253 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds